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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr10 | genome | chr10:593055..595368 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G02150.2 vs.
Match: EWM25440.1 (ddb1- and cul4-associated factor [Nannochloropsis gaditana]) HSP 1 Score: 647.5 bits (1669), Expect = 3.600e-182 Identity = 312/369 (84.55%), Postives = 334/369 (90.51%), Query Frame = 0
Query: 141 FLGALDGHTDGVYCSALSKRNLVQFLTGACDGEVRVWDMNVRKCVWRAYAHSGFVRGLSVAPDGGTFFSCGDKTVKQWKLCVVGDTSEEPSAMNTWLHTESLTSIDHHWRDTRFATAADSRVLVWDHARSSPIQSFSWGCDAISCVRYNPAEHSLLASTGSDRAVTLFDTREGAAMRKAVLVMRSNALAWNPQEPLNFTVASEDHNLYTFDMRKLVQAKLIHKDHVGAVMDLAFSPTGQEFVTGSYDRTVRIFNHREGRSREVYHTKRMQRIFCVNFSGDGRFVLTGSDDTNLRIWKAQASKALGAKVSRAEKKLEYTEALKKRYQHMPEVRRIAKHRHVPKAIK---------KAQELVRVQQDSQRR 501
F+GALDGH DGV+CSALSKRNLVQFLTGACDGEVRVWD+NVRKCVWRAYAH+GFVRGLSVAP GGTFFSCGDKTVKQW LCV D+ +EP+A+NTWLH+E+LTSIDHHWR+ FATAAD+RVLVWDHARS+P+QSFSWGCDAISCVRYNPAE SLLASTGSDRAVTLFDTREGAAMRKAVLVMRSNALAWNPQEPLNFTVASEDHNLYTFD+RKL QAKLIHKDHVGAVMDLAFSPTGQEFVTGSYDRTVRIF HREGRSREVYHTKRMQR+FCVNFSGDGRFVLTGSDDTNLRIWKA+AS+ LG KV RAEKKLEY EALKKRYQHMPEVRRIAKHRH K K ++V + Q + RR
Sbjct: 58 FIGALDGHADGVFCSALSKRNLVQFLTGACDGEVRVWDLNVRKCVWRAYAHAGFVRGLSVAPGGGTFFSCGDKTVKQWTLCVADDSRQEPAALNTWLHSETLTSIDHHWRNAHFATAADTRVLVWDHARSNPVQSFSWGCDAISCVRYNPAERSLLASTGSDRAVTLFDTREGAAMRKAVLVMRSNALAWNPQEPLNFTVASEDHNLYTFDLRKLDQAKLIHKDHVGAVMDLAFSPTGQEFVTGSYDRTVRIFGHREGRSREVYHTKRMQRVFCVNFSGDGRFVLTGSDDTNLRIWKAEASQQLGVKVPRAEKKLEYEEALKKRYQHMPEVRRIAKHRHRANDAKLKIAGSMQEKIAKIVNLCQSANRR 426
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G02150.2 ID=NO10G02150.2|Name=NO10G02150.2|organism=Nannochloropsis oceanica|type=mRNA|length=2229bp
ATAATGACCAAAAAAACGTGTCTCGGCGACCATCGCCATCCTTCCCCAAT
TCCCGACATGAGAATATTGAAGCTTTCAATCACCATGGGCTTCATGTCCT
TTGTATCCAGGTCCGCGATGGCGTCGTCCAAGGTCCACAACTGCTCCTAC
ACGCTAATGTGTAATACAAGCAGGTTATTCACGCCCTTGCTAGCGCGTAA
AACGTGCTGTAATCGGAAGATTTGATGCCCGATGCGTGTCCAAAGCTCCC
GGTGAAGTTCAGACTCTGACGTCGCCGAGTCGGACGCCGTGTGTGCACCT
TTCTCCCCCACCATTCCCACACTCCTCTAGAACGGGCTCAATCTTTATGT
GGCCTTCAATTGGTTCAAACAAACTTCCCTCCTAGACAAGGTCTTAATTG
CGAGGAAGGGCAAGGTGGTGAGGCCCGGCACACTTTCGCGGTGGTTTTGT
GACCATTGAGGCTGAGGATATGGATACTAACTTTCCCCCATCCACCGTAC
TCAACAACACAGCATCATGAAGATTAAGACACTGAGTCGGTCCGAAGAGG
CCTTCACCAGGGAGTGCAAAGGCGACGTTGTCAAGGTCTTCCGTAACCTG
GAGCCGGCCCTCCACCCCTTTGACAAGGCCCGCGAATATACCCGGGCGCT
CACGGCTACCAAGCTGGACAAGATGTTTGCCAAACCCCTTGTCGGTGCGT
GTGTGGTTGTGGGGTGGGGTTCTGGGTATTATATGACTCTCTGGAAGAGG
TATGGGAACGCTTGTATGCGTGGGGCTCGTGTCCCTCAGATAGGCTGTAA
GATCAAGGGTCATGCCACAGCTAATGGTGCCCTTAGGCAAGGCAGGTGCC
CGGTACGATCAGTCTCCATCAAAGCCTACGATAATGATAAGATTGCGGCT
TACAATTTCCCTTCGCCCAATCTTCATTCCTTATTTTTTTTAGGCGCCCT
GGACGGGCATACGGACGGTGTCTACTGCTCGGCTCTAAGCAAAAGGAACT
TGGTCCAGTTCCTCACTGGAGCTTGTGACGGCGAGGTGCGGGTGTGGGAT
ATGAACGTGCGCAAATGTGTCTGGCGGGCATACGCACATTCGGGTTTTGT
ACGGGGTCTATCAGTAGCGCCTGACGGTGGCACATTTTTTTCCTGTGGGG
ACAAAACCGTTAAGCAATGGAAGCTGTGCGTGGTTGGGGACACGAGCGAG
GAACCTTCAGCAATGAATACCTGGTTGCACACAGAAAGCCTCACTTCCAT
CGACCACCACTGGCGGGACACCCGCTTCGCCACCGCCGCCGACTCTCGGG
TCTTAGTCTGGGACCATGCCCGTTCCAGTCCCATCCAATCCTTCTCCTGG
GGCTGCGATGCCATTTCATGCGTGCGGTATAACCCTGCAGAGCATTCCTT
GCTGGCTAGTACCGGATCTGATCGAGCCGTGACCCTCTTTGATACCCGCG
AAGGGGCCGCGATGCGCAAAGCAGTGCTGGTTATGCGGTCCAACGCCTTG
GCTTGGAACCCCCAGGAGCCATTGAACTTCACGGTGGCCAGCGAGGATCA
CAATTTATATACTTTTGACATGCGGAAGCTGGTGCAGGCCAAGCTCATCC
ACAAGGACCACGTGGGGGCAGTCATGGATTTAGCTTTCTCCCCCACTGGG
CAGGAGTTTGTCACGGGCTCCTATGATCGCACTGTGCGTATTTTCAACCA
CCGGGAGGGACGCAGTCGCGAGGTGTATCACACCAAGCGAATGCAGCGTA
TCTTCTGCGTGAATTTCTCGGGGGATGGGCGGTTTGTCCTGACGGGGTCG
GATGACACTAACTTGCGGATTTGGAAGGCGCAGGCCTCGAAGGCGCTGGG
AGCCAAGGTGTCCCGGGCAGAGAAGAAATTGGAGTACACTGAGGCGTTGA
AGAAGCGTTACCAACACATGCCGGAGGTGCGACGTATTGCTAAACACCGC
CATGTACCCAAAGCCATCAAGAAGGCACAGGAGCTGGTCCGTGTGCAGCA
AGACAGCCAGCGCCGCAAGTCTCAGAACCGCCGAAAGCACGCCAAGCCCG
ACAGCGACGAGTTCAAGTTTGTACCGGAACGCAAACAACGGGTCGTAGCC
GAGATGGCGTGAGAATGTTGCATGCAATGTCATTTGTGCAGGCTTGTAAA
AATTACGTACGGGGGGTTTGAAGAGGAAGCACATCGATAGCAGCGGCGAA
AAGTAACAAAGTCAGTTGTCATAGTTGTG back to topprotein sequence of NO10G02150.2 >NO10G02150.2-protein ID=NO10G02150.2-protein|Name=NO10G02150.2|organism=Nannochloropsis oceanica|type=polypeptide|length=532bp
MKIKTLSRSEEAFTRECKGDVVKVFRNLEPALHPFDKAREYTRALTATKL
DKMFAKPLVGACVVVGWGSGYYMTLWKRYGNACMRGARVPQIGCKIKGHA
TANGALRQGRCPVRSVSIKAYDNDKIAAYNFPSPNLHSLFFLGALDGHTD
GVYCSALSKRNLVQFLTGACDGEVRVWDMNVRKCVWRAYAHSGFVRGLSV
APDGGTFFSCGDKTVKQWKLCVVGDTSEEPSAMNTWLHTESLTSIDHHWR
DTRFATAADSRVLVWDHARSSPIQSFSWGCDAISCVRYNPAEHSLLASTG
SDRAVTLFDTREGAAMRKAVLVMRSNALAWNPQEPLNFTVASEDHNLYTF
DMRKLVQAKLIHKDHVGAVMDLAFSPTGQEFVTGSYDRTVRIFNHREGRS
REVYHTKRMQRIFCVNFSGDGRFVLTGSDDTNLRIWKAQASKALGAKVSR
AEKKLEYTEALKKRYQHMPEVRRIAKHRHVPKAIKKAQELVRVQQDSQRR
KSQNRRKHAKPDSDEFKFVPERKQRVVAEMA* back to topmRNA from alignment at chr10:593055..595368+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G02150.2 ID=NO10G02150.2|Name=NO10G02150.2|organism=Nannochloropsis oceanica|type=mRNA|length=2314bp|location=Sequence derived from alignment at chr10:593055..595368+ (Nannochloropsis oceanica)
ATAATGACCAAAAAAACGTGTCTCGGCGACCATCGCCATCCTTCCCCAAT
TCCCGACATGAGAATATTGAAGCTTTCAATCACCATGGGCTTCATGTCCT
TTGTATCCAGGTCCGCGATGGCGTCGTCCAAGGTCCACAACTGCTCCTAC
ACGCTAATGTGTAATACAAGCAGGTTATTCACGCCCTTGCTAGCGCGTAA
AACGTGCTGTAATCGGAAGATTTGATGCCCGATGCGTGTCCAAAGCTCCC
GGTGAAGTTCAGACTCTGACGTCGCCGAGTCGGACGCCGTGTGTGCACCT
TTCTCCCCCACCATTCCCACACTCCTCTAGAACGGGCTCAATCTTTATGT
GGCCTTCAATTGGTTCAAACAAACTTCCCTCCTAGACAAGGTCTTAATTG
CGAGGAAGGGCAAGGTGGTGAGGCCCGGCACACTTTCGCGGTGGTTTTGT
GACCATTGAGGCTGAGGATATGGATACTAACTTTCCCCCATCCACCGTAC
TCAACAACACAGCATCATGAAGATTAAGACACTGAGTCGGTCCGAAGAGG
CCTTCACCAGGGAGTGCAAAGGCGACGTTGTCAAGGTCTTCCGTAACCTG
GAGCCGGCCCTCCACCCCTTTGACAAGGCCCGCGAATATACCCGGGCGCT
CACGGCTACCAAGCTGGACAAGATGTTTGCCAAACCCCTTGTCGGTGCGT
GTGTGGTTGTGGGGTGGGGTTCTGGGTATTATATGACTCTCTGGAAGAGG
TATGGGAACGCTTGTATGCGTGGGGCTCGTGTCCCTCAGATAGGCTGTAA
GATCAAGGGTCATGCCACAGCTAATGGTGCCCTTAGGCAAGGCAGGTGCC
CGGTACGATCAGTCTCCATCAAAGCCTACGATAATGATAAGATTGCGGCT
TACAATTTCCCTTCGCCCAATCTTCATTCCTTATTTTTTTTAGGCGCCCT
GGACGGGCATACGGACGGTGTCTACTGCTCGGCTCTAAGCAAAAGGAACT
TGGTCCAGTTCCTCACTGGAGCTTGTGACGGCGAGGTGCGGGTGTGGGAT
ATGAACGTGCGCAAATGTGTCTGGCGGGCATACGCACATTCGGGTTTTGT
ACGGGGTCTATCAGTAGCGCCTGACGGTGGCACATTTTTTTCCTGTGGGG
ACAAAACCGTTAAGCAATGGAAGCTGTGCGTGGTTGGGGACACGAGCGAG
GTACGTGATCCGCATTGCGCCCTCCATCTTAGTAAGTCACCAGATCACAT
AGATAATTTATTCCTCCCTCCCACATCCCTAATAGGAACCTTCAGCAATG
AATACCTGGTTGCACACAGAAAGCCTCACTTCCATCGACCACCACTGGCG
GGACACCCGCTTCGCCACCGCCGCCGACTCTCGGGTCTTAGTCTGGGACC
ATGCCCGTTCCAGTCCCATCCAATCCTTCTCCTGGGGCTGCGATGCCATT
TCATGCGTGCGGTATAACCCTGCAGAGCATTCCTTGCTGGCTAGTACCGG
ATCTGATCGAGCCGTGACCCTCTTTGATACCCGCGAAGGGGCCGCGATGC
GCAAAGCAGTGCTGGTTATGCGGTCCAACGCCTTGGCTTGGAACCCCCAG
GAGCCATTGAACTTCACGGTGGCCAGCGAGGATCACAATTTATATACTTT
TGACATGCGGAAGCTGGTGCAGGCCAAGCTCATCCACAAGGACCACGTGG
GGGCAGTCATGGATTTAGCTTTCTCCCCCACTGGGCAGGAGTTTGTCACG
GGCTCCTATGATCGCACTGTGCGTATTTTCAACCACCGGGAGGGACGCAG
TCGCGAGGTGTATCACACCAAGCGAATGCAGCGTATCTTCTGCGTGAATT
TCTCGGGGGATGGGCGGTTTGTCCTGACGGGGTCGGATGACACTAACTTG
CGGATTTGGAAGGCGCAGGCCTCGAAGGCGCTGGGAGCCAAGGTGTCCCG
GGCAGAGAAGAAATTGGAGTACACTGAGGCGTTGAAGAAGCGTTACCAAC
ACATGCCGGAGGTGCGACGTATTGCTAAACACCGCCATGTACCCAAAGCC
ATCAAGAAGGCACAGGAGCTGGTCCGTGTGCAGCAAGACAGCCAGCGCCG
CAAGTCTCAGAACCGCCGAAAGCACGCCAAGCCCGACAGCGACGAGTTCA
AGTTTGTACCGGAACGCAAACAACGGGTCGTAGCCGAGATGGCGTGAGAA
TGTTGCATGCAATGTCATTTGTGCAGGCTTGTAAAAATTACGTACGGGGG
GTTTGAAGAGGAAGCACATCGATAGCAGCGGCGAAAAGTAACAAAGTCAG
TTGTCATAGTTGTG back to topCoding sequence (CDS) from alignment at chr10:593055..595368+ >NO10G02150.2 ID=NO10G02150.2|Name=NO10G02150.2|organism=Nannochloropsis oceanica|type=CDS|length=1596bp|location=Sequence derived from alignment at chr10:593055..595368+ (Nannochloropsis oceanica)
ATGAAGATTAAGACACTGAGTCGGTCCGAAGAGGCCTTCACCAGGGAGTG
CAAAGGCGACGTTGTCAAGGTCTTCCGTAACCTGGAGCCGGCCCTCCACC
CCTTTGACAAGGCCCGCGAATATACCCGGGCGCTCACGGCTACCAAGCTG
GACAAGATGTTTGCCAAACCCCTTGTCGGTGCGTGTGTGGTTGTGGGGTG
GGGTTCTGGGTATTATATGACTCTCTGGAAGAGGTATGGGAACGCTTGTA
TGCGTGGGGCTCGTGTCCCTCAGATAGGCTGTAAGATCAAGGGTCATGCC
ACAGCTAATGGTGCCCTTAGGCAAGGCAGGTGCCCGGTACGATCAGTCTC
CATCAAAGCCTACGATAATGATAAGATTGCGGCTTACAATTTCCCTTCGC
CCAATCTTCATTCCTTATTTTTTTTAGGCGCCCTGGACGGGCATACGGAC
GGTGTCTACTGCTCGGCTCTAAGCAAAAGGAACTTGGTCCAGTTCCTCAC
TGGAGCTTGTGACGGCGAGGTGCGGGTGTGGGATATGAACGTGCGCAAAT
GTGTCTGGCGGGCATACGCACATTCGGGTTTTGTACGGGGTCTATCAGTA
GCGCCTGACGGTGGCACATTTTTTTCCTGTGGGGACAAAACCGTTAAGCA
ATGGAAGCTGTGCGTGGTTGGGGACACGAGCGAGGAACCTTCAGCAATGA
ATACCTGGTTGCACACAGAAAGCCTCACTTCCATCGACCACCACTGGCGG
GACACCCGCTTCGCCACCGCCGCCGACTCTCGGGTCTTAGTCTGGGACCA
TGCCCGTTCCAGTCCCATCCAATCCTTCTCCTGGGGCTGCGATGCCATTT
CATGCGTGCGGTATAACCCTGCAGAGCATTCCTTGCTGGCTAGTACCGGA
TCTGATCGAGCCGTGACCCTCTTTGATACCCGCGAAGGGGCCGCGATGCG
CAAAGCAGTGCTGGTTATGCGGTCCAACGCCTTGGCTTGGAACCCCCAGG
AGCCATTGAACTTCACGGTGGCCAGCGAGGATCACAATTTATATACTTTT
GACATGCGGAAGCTGGTGCAGGCCAAGCTCATCCACAAGGACCACGTGGG
GGCAGTCATGGATTTAGCTTTCTCCCCCACTGGGCAGGAGTTTGTCACGG
GCTCCTATGATCGCACTGTGCGTATTTTCAACCACCGGGAGGGACGCAGT
CGCGAGGTGTATCACACCAAGCGAATGCAGCGTATCTTCTGCGTGAATTT
CTCGGGGGATGGGCGGTTTGTCCTGACGGGGTCGGATGACACTAACTTGC
GGATTTGGAAGGCGCAGGCCTCGAAGGCGCTGGGAGCCAAGGTGTCCCGG
GCAGAGAAGAAATTGGAGTACACTGAGGCGTTGAAGAAGCGTTACCAACA
CATGCCGGAGGTGCGACGTATTGCTAAACACCGCCATGTACCCAAAGCCA
TCAAGAAGGCACAGGAGCTGGTCCGTGTGCAGCAAGACAGCCAGCGCCGC
AAGTCTCAGAACCGCCGAAAGCACGCCAAGCCCGACAGCGACGAGTTCAA
GTTTGTACCGGAACGCAAACAACGGGTCGTAGCCGAGATGGCGTGA back to top
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