NO10G02090, NO10G02090 (gene) Nannochloropsis oceanica

Overview
NameNO10G02090
Unique NameNO10G02090
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4838
Alignment locationchr10:573316..578153 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:573316..578153 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR025258Zf-RING_9
Homology
The following BLAST results are available for this feature:
BLAST of NO10G02090 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G02090.1NO10G02090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|554220gene_4004Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G02090.1NO10G02090.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G02090 ID=NO10G02090|Name=NO10G02090|organism=Nannochloropsis oceanica|type=gene|length=4838bp
AGCTTTATCAGTCCCAAGCGACGGAATGAGGCGGGCGAGGTTTCATGCGG
CAAGCCGGAGGACAAACGCAACGACCTCCTGCTTCGGGATCATCACAATG
GGCCTCGACGACACCGCCCTCCTCCAGCTGCTTATCATCAACAATCGGGC
ATAGATATGAACTTACCACCTTCCGCACTTTTGAGGGATGGCGGAAGTGA
GGCGCTATGGGCGCTAGGTTCGTCCCTTGGAAACCATTTTGCCAATACCA
CACGGCGGGGTCAGGAGATAGCCGATGTCGTCGAACAAAGCCTGCGATCA
AGCTCTCCCATGCGAAGTCTCGTCTCTCAAGTAGGCACCGAATGGGTGAC
CAGCAATAGGAGCCGCCGCAACGAGAGTAAGGAAGAGGGAGACCCTGTAG
TGGAAGCTGCGGCGGCGGTTCTGGTGGACGATCTCAAGACGGTGAGCACT
CGAGATGCTACTGCTGTATGGGTGACGACAGAGGTGGCGGCGGTCCGCAC
AAAATTGGACGCCTTCCTTTTTGCGTGTTTAAGATGCACCGGTAGTGGTC
TGGAAGAAATGGGCGAGCTGCTTGCCCGCTGTCTGTCTGAAGTGGAAGAA
GAGGAGCTCGGTCGTGGTAAGCTTGTGTATGCGTCTGGATCGTGGGAAGC
CATCCTACGGGCTTGGTTGCGGCTGGAGTTGCTGCGGGCCACCGACACGA
GCATTGATAGCCAGCAAGAAAGACAGAATCGTTTTCAAGTTCTTTGTGCG
ATGGTCGTCAAAGGGGAATTAGTAGCCACGTGCCACGgtacgcttgtttt
ggttgaagaagtgcatggggaggaaggaaatgtccgcattcttcttggca
ttccctactcaaccctcaccaactttctttccacaaactacgcagACATT
CAAAATTTACGAAAAGTGCTTTGTAGAGTCCAGAATTGCCTCGACAGGCT
CGCTGCACTGGCATCAACTGATAGGACAGTATCTGTCATATGCTTGCCTC
TCGACCTCCCCCTCCCCCAAAGCCTGCCTATCTGCCTTTTCTCCTCTGAC
AGCTCTTACGATAGACAGCTTGCTGCTGCTAGTGAGTTCGCAGCAAAACA
AATAGCATCAGAAGTATCAACAGCAGGAGCAGCAGCAACAGCAACAGCAA
CAATAGTTGGCATGACCAGTACGATTGAAGTTCGTGGCGCGGGGCTAGAG
CAAGgtaagtcacactaggttttgatattcaaatttccagcaatttcatt
tgagtttactactactactacccatttatttattcatcaattcatgtctt
aaataaatgtaatgctgtgtaaatttttctatgcattcctcaccaacaca
ccctcccacccgtcttccgacacaatataaacacagTCAATGGCCTCTAC
CACCCCTCTTCAACGACATTAAAATCACATATATCATTTCATCACACCCA
ATCATCAGAGCTCCAGCTTTTCTTCTCGCCGTGTGTGCCTCCCCTTCTCC
GTGCTTCTGCTGCTACTGCTTCTGCTGCTCCTACTGCTCCTACTACTGCT
GCTCTTACTACTGCTGCTGATGGCGGCGCCTGGTATATAGGAGACGTCCA
AAAGCGAGTCATTTATTATGTAGCACCTGTTCTTGCCTACACGGTATCTT
GCTGCTGCTGCTGTTGCGTGGAGGGGGTTGCACAGGAGCAGGAGGGGGAA
GGAGTAGCATTCGCAGAGAAAGGAGGGATAGAGAGTGGGGGAGGGACAGC
ATCCGCGAAAGCACGATATTGTCCGCCTCGAAATGGGTGGCGACCTATTT
TTTCCGGTGGATGCTTTCCCGGCCCTTGGGTTTTGATCCCACCACTGCAG
CAGGGGGAAGAGCAGGAGCCAGAGCAGCAGGACTTCGATGAAGCCATTAG
TAGTTGCGTTGACTGCGTGGACAAGGGGGAGAGGAGTCAGAAGCAGCGAG
GAGCATCGTTTTCAGTTGCGGCCGTCGGAGCTTCAGACTTACAGTCACGT
GTACATGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGAAGCAGATGAGCAT
AAAGGAGTCTCGCCATCGTCGTCGTCGTCCTCCCTCAATCCCTTCCTATC
CTTCCTCGAAGCGGAAGGAGGCAAACATTGTAGTGGTGGCCGCAGAGATA
GAAGAGATAAAGGAAAAACAGGAGCAGAACAGAGACCAAGACGCGAAAGT
CCAAGGAGGGCAGGAGCAGCAGCAAGATTACCCCGTTCCTCCAGCATCAT
CACGTGCTCCTTCATTGTGGTCATTAGTGCGGGCACCACAAGGATCTCTC
CTCTCCTCTAGCCTCTCTCCTTTAATGGCAATGGCAGGAGGAAAAGGACA
AGGGAGAGAAGGAGGAGGGGATGTTGCAAACGTAATGGAAGGGGAAGACC
GCAGCAGCGGGAGCAGCAGCAGTAGCAGCACCACCACCATTTTGGAACGG
TACTTTCTGCTACAGTACCAGAATGCATGCGATCGTTTGGTGGAGGAAGA
AAAGAAGCAGAGGGAATGGTGGCGACAACAAAAGCAGCAGCAGCTTGCCG
AGAGGGAGATTGTCGCTATTGAGAACGAGAACGAGGGATGGGAGGAGGAC
GACGCCACCTTTTCTTTCGAAGAAGCGGTGCGGTGGGCGGAGCTGAACCA
GGAGGAACAGCAGCGGCATGAGAAGCAATATGAGCCAGAGACTGTAAAGA
CTACCCTTGACGACGGTGAAGCGCCTCTAACCTTATCCGCGACGGCGTCA
GTGCTTATTTATCCTCCTTCTTCTCCTTCTCCTTCTCTCCATTCTTCTCC
TCCTCTTCCATCTCTTCCTCCCCCTCCCCATTTCTCTTCTACATTTCCCT
CTCCTCCTCCTCCTTCTTCTCCTCCTCCTCCTCCTTCTTCTTCTTCTTCT
TGTTCTTGTTCTTCATCCCTTCTTTCTCCTTCTCCCGCTGCTCCTCTTTT
ATCACCATCAACAGCTGCGCATGCGAGGCCTGTATATATTGACTGGTGGG
GGGAGGAGGAATTGGAGGGGGATAGGACGGTGGAGCCTACCCCTCACGTT
CTGGGTAGCATACGTGTCGAGGTGTTAGGGATGGAAAGGATTGAAAGGAA
GGAGGAGAAGGGAGGAAAGGGTTTTGGAAGGAAGAAGAAGAAGAAGAAGA
AGAAGAAGAAGAAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAG
GAGGAGGAGGAAGAGGAGGAGGAGGAGTTTTTGGTGCGTTTTACAAGGGT
GGAGACTGAAGAAAAGGGTTGGGCGGAAGAGTGGTGTGGTGGGGAAGGGG
GACAAAGGAATTTGACCATGGCAAAAACACCACGTCTTGTGCGTCATCGT
GTTCGGGTGGTGCGTAAGACAAGAGCAGGGTTAGAGGACCTGTATGCTCG
TCTTAAACACGTGCTCCTGCGGACGACTAATGCTGATACTTTTGTCACTG
CTGCTGCTGCTACTGCTTTTAATGTCAGCTTGCCAACGCTGCCCGATTTA
GGCGGTATGTCTTTACCCGCGAGCGCTAGGAGAGAGAGGAGGATACGAGG
AAAGGAAGAGCAAGGGGAGGCCTTTTTAAGTTTTGGTGAAGTGTTTGGCT
CTTTCTCACGGCAGCAACAGCTGCAAAAGCAGCGGCAGCAGCGGCAGCAG
CGGCAGCGAGAGGCATTATTGGAAGAGTACTTGAATGCTCTGATGAAAGT
CGAGGAGGGACCCGCAAAAGCAGCAGGAGTAGCAGCAGACATCGCATGCG
TCCTTCGGGCCGCCTTTCAACCGGAGGAAGAGGCAGGGGCACGGAGGGAG
GACCTGCTCATCCGACTCCGCACAGAGCCCGTGCCTGACATGACCTCAGT
GCGTCGAGACGAGCTATGGGCTCGTCAAGGAGGGCGCTGTCGTGGGTGTG
GGCAGAGGCTGCTAAAAGGCTTACTCGAGAAAAAGAACTTCATGACTTGT
CGCTATTTACAGGCGCTTTTTTGCACTAAATTTTGCGCTGACAACAAGAG
CAGTAGCAGTAACAGTGGCAGTAGCAACACGAGCAGTACGGAAGTGGGAA
CATTTGTTTTGCCGGGTCAAGTGTTGACGAAATGGGACTTTCGACTGAGA
CGCGTAGCATTCCCAGCATTAGTCTTCCTTCGAAGCATCCGACGATTGCC
CATCTTTTCTCTGGCGGCTGTGTGGTCCATGACCACCTTTCCCACGAGCA
GGACCAGCGTGATACAACGGCAAATCAAGTACCTCCAGAACCTACGTCGA
CAGCTATCTCACCTGTGCGCCGGTCTCCTCGTGTTGCTTCCCACTTCCTC
GTTGTCGTCATCCTCGCCCTCAGTAGCCTGCGTCTGCCCGATGGCACGTC
GCTTAATTGCACCTGTGCTGCAGAGCCGTCCGCATTTTGTGCTTCGTACT
ACTGGTAACGAGGAAAACGAAGACGAAGAGAGCGTCTCTTTGGTCGACCT
ACAGGAGCTGCAGTCAGGAGTGCTGTCTGACGTGTTGAGCACGTTGCTGG
AGGCATTACATTCGCACGTGGTTGAGGGGGGCGGCAGGAAGGAGTGTCGA
CATTGCATGGGGAGAGGGCAAGGCCCAGCGTCAGGCTACGCTCTTTGGGG
AGTCATAGATGGCGGTGAGGATGTAACAGTTAAGAAGAGAAGAGGAAAGG
AGTAAAGCTGACAGACTTCATCAAGAGAACGCGTGCTCGCTTTGTTAAGC
ATGACTGCCGCGGCAAAGAGGTAACACTTTCGACTTTTTGAGAAAAAGGC
TCCTAAGGCTCAAGAGCCGGCTGTAATAAAGGAAAATGAAAGAGAGCAAG
CGTGGAGCGACTTTTGAGTCCGGGAGTGAGGCCTTATA
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protein sequence of NO10G02090.1

>NO10G02090.1-protein ID=NO10G02090.1-protein|Name=NO10G02090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1403bp
MNLPPSALLRDGGSEALWALGSSLGNHFANTTRRGQEIADVVEQSLRSSS
PMRSLVSQVGTEWVTSNRSRRNESKEEGDPVVEAAAAVLVDDLKTVSTRD
ATAVWVTTEVAAVRTKLDAFLFACLRCTGSGLEEMGELLARCLSEVEEEE
LGRGKLVYASGSWEAILRAWLRLELLRATDTSIDSQQERQNRFQVLCAMV
VKGELVATCHDIQNLRKVLCRVQNCLDRLAALASTDRTVSVICLPLDLPL
PQSLPICLFSSDSSYDRQLAAASEFAAKQIASEVSTAGAAATATATIVGM
TSTIEVRGAGLEQVNGLYHPSSTTLKSHISFHHTQSSELQLFFSPCVPPL
LRASAATASAAPTAPTTAALTTAADGGAWYIGDVQKRVIYYVAPVLAYTV
SCCCCCCVEGVAQEQEGEGVAFAEKGGIESGGGTASAKARYCPPRNGWRP
IFSGGCFPGPWVLIPPLQQGEEQEPEQQDFDEAISSCVDCVDKGERSQKQ
RGASFSVAAVGASDLQSRVHEQEQEQEQEQKQMSIKESRHRRRRPPSIPS
YPSSKRKEANIVVVAAEIEEIKEKQEQNRDQDAKVQGGQEQQQDYPVPPA
SSRAPSLWSLVRAPQGSLLSSSLSPLMAMAGGKGQGREGGGDVANVMEGE
DRSSGSSSSSSTTTILERYFLLQYQNACDRLVEEEKKQREWWRQQKQQQL
AEREIVAIENENEGWEEDDATFSFEEAVRWAELNQEEQQRHEKQYEPETV
KTTLDDGEAPLTLSATASVLIYPPSSPSPSLHSSPPLPSLPPPPHFSSTF
PSPPPPSSPPPPPSSSSSCSCSSSLLSPSPAAPLLSPSTAAHARPVYIDW
WGEEELEGDRTVEPTPHVLGSIRVEVLGMERIERKEEKGGKGFGRKKKKK
KKKKKKKEEEEEEEEEEEEEEEEEEEEFLVRFTRVETEEKGWAEEWCGGE
GGQRNLTMAKTPRLVRHRVRVVRKTRAGLEDLYARLKHVLLRTTNADTFV
TAAAATAFNVSLPTLPDLGGMSLPASARRERRIRGKEEQGEAFLSFGEVF
GSFSRQQQLQKQRQQRQQRQREALLEEYLNALMKVEEGPAKAAGVAADIA
CVLRAAFQPEEEAGARREDLLIRLRTEPVPDMTSVRRDELWARQGGRCRG
CGQRLLKGLLEKKNFMTCRYLQALFCTKFCADNKSSSSNSGSSNTSSTEV
GTFVLPGQVLTKWDFRLRRVAFPALVFLRSIRRLPIFSLAAVWSMTTFPT
SRTSVIQRQIKYLQNLRRQLSHLCAGLLVLLPTSSLSSSSPSVACVCPMA
RRLIAPVLQSRPHFVLRTTGNEENEDEESVSLVDLQELQSGVLSDVLSTL
LEALHSHVVEGGGRKECRHCMGRGQGPASGYALWGVIDGGEDVTVKKRRG
KE*
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Synonyms
Publications