NO10G02080, NO10G02080 (gene) Nannochloropsis oceanica

Overview
NameNO10G02080
Unique NameNO10G02080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length747
Alignment locationchr10:572569..573315 +

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Properties
Property NameValue
DescriptionHistone
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:572569..573315 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR007125Histone_core_D
IPR000558Histone_H2B
Homology
[Close]
BLAST of NO10G02080 vs. NCBI_GenBank
Match: AFB75403.1 (histone [Nannochloropsis sp. CCMP1779])

HSP 1 Score: 220.3 bits (560), Expect = 4.000e-54
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 
Query:   32 MAKTPSKKSAKAPKKAGKGTKKKTRVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREVQTAVRLTLPGELAKHAVSEGTKAVTKYTSSS 149
            MAKTPSKKSAKAPKKAGKGTKKKTRVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREVQTAVRLTLPGELAKHAVSEGTKAVTKYTSSS
Sbjct:    1 MAKTPSKKSAKAPKKAGKGTKKKTRVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREVQTAVRLTLPGELAKHAVSEGTKAVTKYTSSS 117
[Close]
BLAST of NO10G02080 vs. NCBI_GenBank
Match: EWM21651.1 (histone h2b [Nannochloropsis gaditana] >EWM25465.1 histone h2b [Nannochloropsis gaditana])

HSP 1 Score: 219.9 bits (559), Expect = 5.200e-54
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0 
Query:   32 MAKTPSKKSAKAPKKAGKGTKKKTRVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREVQTAVRLTLPGELAKHAVSEGTKAVTKYTSSS 149
            MAKTPSKKSAKAPKKAGKGTKKKTRVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEAGKLARYTKKSTLSSRE+QTAVRLTLPGELAKHAVSEGTKAVTKYTSSS
Sbjct:    1 MAKTPSKKSAKAPKKAGKGTKKKTRVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREIQTAVRLTLPGELAKHAVSEGTKAVTKYTSSS 117
[Close]
BLAST of NO10G02080 vs. NCBI_GenBank
Match: XP_002179210.1 (histone H2B isoform 1b [Phaeodactylum tricornutum CCAP 1055/1] >XP_002179551.1 histone H2B isoform 1a [Phaeodactylum tricornutum CCAP 1055/1] >EEC49033.1 histone H2B isoform 1b [Phaeodactylum tricornutum CCAP 1055/1] >EEC49374.1 histone H2B isoform 1a [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 184.9 bits (468), Expect = 1.800e-43
Identity = 95/116 (81.90%), Postives = 106/116 (91.38%), Query Frame = 0 
Query:   32 MAKTPSKKSAKAPKKAGKGTKKKTRVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREVQTAVRLTLPGELAKHAVSEGTKAVTKYTSS 148
            MAKTPSK+SAKAPKKA  GTK K R E+Y SYIYKVLKQVHPDTGISK+G+SI+NSFI DIF+R+ATEAGKLA Y KK+TLSSRE+QTAVRL LPGELAKHAVSEGTKAVTK++SS
Sbjct:    1 MAKTPSKQSAKAPKKAATGTKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 116
[Close]
BLAST of NO10G02080 vs. NCBI_GenBank
Match: XP_009827119.1 (histone H2B [Aphanomyces astaci] >XP_009831796.1 histone H2B [Aphanomyces astaci] >ETV79077.1 histone H2B [Aphanomyces astaci] >ETV83689.1 histone H2B [Aphanomyces astaci])

HSP 1 Score: 183.7 bits (465), Expect = 4.100e-43
Identity = 98/119 (82.35%), Postives = 111/119 (93.28%), Query Frame = 0 
Query:   32 MAKTPSKKSAKAPKKAG-KGTKKKT-RVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREVQTAVRLTLPGELAKHAVSEGTKAVTKYTSSS 149
            MAKTPSKKSAKAPKKAG KG  +KT R+ESY +YIYKVLKQVHP+TGISKRG+SI+NSFI DIF+R+A+EAGKL+RY KKSTLSSRE+QTAVRL LPGELAKHAVSEGTKAVTK+TSS+
Sbjct:    1 MAKTPSKKSAKAPKKAGEKGKSRKTKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSSA 119
[Close]
BLAST of NO10G02080 vs. NCBI_GenBank
Match: XP_008868867.1 (histone H2B [Aphanomyces invadans] >ETW02262.1 histone H2B [Aphanomyces invadans])

HSP 1 Score: 183.7 bits (465), Expect = 4.100e-43
Identity = 98/119 (82.35%), Postives = 111/119 (93.28%), Query Frame = 0 
Query:   32 MAKTPSKKSAKAPKKAG-KGTKKKT-RVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREVQTAVRLTLPGELAKHAVSEGTKAVTKYTSSS 149
            MAKTPSKKSAKAPKKAG KG  +KT R+ESY +YIYKVLKQVHP+TGISKRG+SI+NSFI DIF+R+A+EAGKL+RY KKSTLSSRE+QTAVRL LPGELAKHAVSEGTKAVTK+TSS+
Sbjct:    1 MAKTPSKKSAKAPKKAGEKGKNRKTKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSSA 119
[Close]
BLAST of NO10G02080 vs. NCBI_GenBank
Match: XP_009832624.1 (histone H2B [Aphanomyces astaci] >ETV77514.1 histone H2B [Aphanomyces astaci])

HSP 1 Score: 183.3 bits (464), Expect = 5.400e-43
Identity = 97/120 (80.83%), Postives = 110/120 (91.67%), Query Frame = 0 
Query:   32 MAKTPSKKSAKAPKKAGKG---TKKKTRVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREVQTAVRLTLPGELAKHAVSEGTKAVTKYTSSS 149
            MAKTPSKKSAKAPKKAG+G    K+  RVESY +YIYKVLKQVHP+TGISKRG+SI+NSFI DIF+R+A+EAGKL+RY KKSTLSSRE+QTAVRL LPGELAKHAVSEGTKAVTK+TSS+
Sbjct:    1 MAKTPSKKSAKAPKKAGEGXXXXKRVKRVESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSSA 120
[Close]
BLAST of NO10G02080 vs. NCBI_GenBank
Match: XP_009032690.1 (hypothetical protein AURANDRAFT_58562 [Aureococcus anophagefferens] >XP_009034196.1 hypothetical protein AURANDRAFT_22627 [Aureococcus anophagefferens] >XP_009034586.1 hypothetical protein AURANDRAFT_22124 [Aureococcus anophagefferens] >XP_009041313.1 hypothetical protein AURANDRAFT_59555 [Aureococcus anophagefferens] >EGB04036.1 hypothetical protein AURANDRAFT_59555 [Aureococcus anophagefferens] >EGB10586.1 hypothetical protein AURANDRAFT_22627 [Aureococcus anophagefferens] >EGB11027.1 hypothetical protein AURANDRAFT_22124 [Aureococcus anophagefferens] >EGB13089.1 hypothetical protein AURANDRAFT_58562 [Aureococcus anophagefferens])

HSP 1 Score: 182.2 bits (461), Expect = 1.200e-42
Identity = 93/116 (80.17%), Postives = 107/116 (92.24%), Query Frame = 0 
Query:   32 MAKTPSKKSAKAPKKAGKGTKKKTRVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREVQTAVRLTLPGELAKHAVSEGTKAVTKYTSS 148
            MAKTPSKKSAKAPKKA  G KKKTRVESY +YIY+VLKQVHPDTGISK+G+SI+NSFI DIF+R+A EA KL R++KK+TLSSRE+QTAVRL LPGEL+KHAVSEGTKAVTK++SS
Sbjct:    1 MAKTPSKKSAKAPKKAAGGKKKKTRVESYSTYIYRVLKQVHPDTGISKKGMSIMNSFINDIFERIALEASKLCRFSKKATLSSREIQTAVRLMLPGELSKHAVSEGTKAVTKFSSS 116
[Close]
BLAST of NO10G02080 vs. NCBI_GenBank
Match: XP_008871810.1 (histone H2B [Aphanomyces invadans] >ETV99254.1 histone H2B [Aphanomyces invadans])

HSP 1 Score: 182.2 bits (461), Expect = 1.200e-42
Identity = 97/119 (81.51%), Postives = 110/119 (92.44%), Query Frame = 0 
Query:   32 MAKTPSKKSAKAPKKAG-KGTKKKT-RVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREVQTAVRLTLPGELAKHAVSEGTKAVTKYTSSS 149
            MAKTPSKKSAKAPKK G KG  +KT R+ESY +YIYKVLKQVHP+TGISKRG+SI+NSFI DIF+R+A+EAGKL+RY KKSTLSSRE+QTAVRL LPGELAKHAVSEGTKAVTK+TSS+
Sbjct:    1 MAKTPSKKSAKAPKKTGEKGKNRKTKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSSA 119
[Close]
BLAST of NO10G02080 vs. NCBI_GenBank
Match: XP_009034194.1 (hypothetical protein AURANDRAFT_59896 [Aureococcus anophagefferens] >XP_009034584.1 hypothetical protein AURANDRAFT_59916 [Aureococcus anophagefferens] >XP_009041151.1 hypothetical protein AURANDRAFT_32955 [Aureococcus anophagefferens] >XP_009041607.1 hypothetical protein AURANDRAFT_60350 [Aureococcus anophagefferens] >XP_009042080.1 hypothetical protein AURANDRAFT_60369 [Aureococcus anophagefferens] >EGB03227.1 hypothetical protein AURANDRAFT_60369 [Aureococcus anophagefferens] >EGB03678.1 hypothetical protein AURANDRAFT_60350 [Aureococcus anophagefferens] >EGB04165.1 hypothetical protein AURANDRAFT_32955 [Aureococcus anophagefferens] >EGB10584.1 hypothetical protein AURANDRAFT_59896 [Aureococcus anophagefferens] >EGB11025.1 hypothetical protein AURANDRAFT_59916 [Aureococcus anophagefferens])

HSP 1 Score: 180.6 bits (457), Expect = 3.500e-42
Identity = 92/115 (80.00%), Postives = 106/115 (92.17%), Query Frame = 0 
Query:   32 MAKTPSKKSAKAPKKAGKGTKKKTRVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREVQTAVRLTLPGELAKHAVSEGTKAVTKYTS 147
            MAKTPSKKSAKAPKKA  G KKKTRVESY +YIY+VLKQVHPDTGISK+G+SI+NSFI DIF+R+A EA KL R++KK+TLSSRE+QTAVRL LPGEL+KHAVSEGTKAVTK++S
Sbjct:    1 MAKTPSKKSAKAPKKAAGGKKKKTRVESYSTYIYRVLKQVHPDTGISKKGMSIMNSFINDIFERIALEASKLCRFSKKATLSSREIQTAVRLMLPGELSKHAVSEGTKAVTKFSS 115
[Close]
BLAST of NO10G02080 vs. NCBI_GenBank
Match: CBJ32076.1 (conserved unknown protein [Ectocarpus siliculosus] >CBJ33202.1 conserved unknown protein [Ectocarpus siliculosus] >CBJ48886.1 conserved unknown protein [Ectocarpus siliculosus] >CBN74672.1 conserved unknown protein [Ectocarpus siliculosus] >CBN77409.1 conserved unknown protein [Ectocarpus siliculosus] >CBN77452.1 conserved unknown protein [Ectocarpus siliculosus] >CBN77458.1 conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 180.3 bits (456), Expect = 4.500e-42
Identity = 94/116 (81.03%), Postives = 103/116 (88.79%), Query Frame = 0 
Query:   32 MAKTPSKKSAKAPKKAGKGTKKKTRVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREVQTAVRLTLPGELAKHAVSEGTKAVTKYTSS 148
            MAKTPSKKSAKAPKKAG   +   R ESY SYIYKVLKQVHPDTGISKRG+SI+NSFI D+F+R+A E+GKL RY KK+TLSSREVQTAVRL LPGELAKHAVSEGTKAVTK+TSS
Sbjct:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
The following BLAST results are available for this feature:
BLAST of NO10G02080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
AFB75403.14.000e-54100.00histone [Nannochloropsis sp. CCMP1779][more]
EWM21651.15.200e-5499.15histone h2b [Nannochloropsis gaditana] >EWM25465.1... [more]
XP_002179210.11.800e-4381.90histone H2B isoform 1b [Phaeodactylum tricornutum ... [more]
XP_009827119.14.100e-4382.35histone H2B [Aphanomyces astaci] >XP_009831796.1 h... [more]
XP_008868867.14.100e-4382.35histone H2B [Aphanomyces invadans] >ETW02262.1 his... [more]
XP_009832624.15.400e-4380.83histone H2B [Aphanomyces astaci] >ETV77514.1 histo... [more]
XP_009032690.11.200e-4280.17hypothetical protein AURANDRAFT_58562 [Aureococcus... [more]
XP_008871810.11.200e-4281.51histone H2B [Aphanomyces invadans] >ETV99254.1 his... [more]
XP_009034194.13.500e-4280.00hypothetical protein AURANDRAFT_59896 [Aureococcus... [more]
CBJ32076.14.500e-4281.03conserved unknown protein [Ectocarpus siliculosus]... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001076NSK001076Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G02080.1NO10G02080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586122gene_4005Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100005g46gene5078Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G02080.1NO10G02080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G02080 ID=NO10G02080|Name=NO10G02080|organism=Nannochloropsis oceanica|type=gene|length=747bp
CAAATAACCACTTCGAGGGTTCTTGCGTTCACTCCGCGCAGTCACTTGTG
TCTGTCTTCTCCTTCTCACCCACCTTTCGTTTGTGATGCATGCATGTGGC
GTTCAGGCCAAATGTTTGTCATCACCACACCGTAATTGTACCCCTTAACC
ATACACCACAACTGACTCAACACCCCACGCTCACGCGCTCCACAACTGCC
CATTCTCTGCGGACAAGGCGGGAAAATGAGACTCACGCCCCTACGACATC
GACACGACCACCACGTCTCACTCTCCCACTTCCTCATCCACTCCGCACAG
ACCAACCCTATCTCAATCATGGCCAAGACACCCTCCAAGAAGTCCGCCAA
GGCCCCTAAGAAGGCCGGCAAGGGCACCAAGAAGAAGACCCGCGTGGAGA
GCTACGGCTCCTACATCTACAAGGTCCTCAAGCAGGTGCACCCCGACACT
GGTATCTCCAAGCGTGGCGTGTCGATCTTAAATTCCTTCATTGGCGACAT
CTTCGACCGCCTCGCCACTGAGGCCGGCAAGCTGGCCCGCTACACGAAGA
AGTCTACCCTGTCTTCCCGCGAGGTGCAGACAGCTGTCCGCCTCACCCTC
CCCGGTGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCCGTCAC
CAAGTACACCTCCAGCTCCTAAACAGTTCTGGAAGTGACTCGTGGCGAAG
CTCACCAAAGCAACAAGACGAGAAAGATATCCAACCAGCAGAGGCCT
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protein sequence of NO10G02080.1

>NO10G02080.1-protein ID=NO10G02080.1-protein|Name=NO10G02080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=149bp
MRLTPLRHRHDHHVSLSHFLIHSAQTNPISIMAKTPSKKSAKAPKKAGKG
TKKKTRVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEA
GKLARYTKKSTLSSREVQTAVRLTLPGELAKHAVSEGTKAVTKYTSSS*
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Synonyms
Publications