NO10G02080.1, NO10G02080.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G02080.1
Unique NameNO10G02080.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length747
Alignment locationchr10:572569..573315 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:572569..573315 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G02080.1 vs.
Match: AFB75403.1 (histone [Nannochloropsis sp. CCMP1779])

HSP 1 Score: 220.3 bits (560), Expect = 4.000e-54
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 
Query:   32 MAKTPSKKSAKAPKKAGKGTKKKTRVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREVQTAVRLTLPGELAKHAVSEGTKAVTKYTSSS 149
            MAKTPSKKSAKAPKKAGKGTKKKTRVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREVQTAVRLTLPGELAKHAVSEGTKAVTKYTSSS
Sbjct:    1 MAKTPSKKSAKAPKKAGKGTKKKTRVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREVQTAVRLTLPGELAKHAVSEGTKAVTKYTSSS 117
The following BLAST results are available for this feature:
BLAST of NO10G02080.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
AFB75403.14.000e-54100.00histone [Nannochloropsis sp. CCMP1779][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02080NO10G02080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G02080.1NO10G02080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G02080.1.cds1NO10G02080.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G02080.1 ID=NO10G02080.1|Name=NO10G02080.1|organism=Nannochloropsis oceanica|type=mRNA|length=747bp
CAAATAACCACTTCGAGGGTTCTTGCGTTCACTCCGCGCAGTCACTTGTG
TCTGTCTTCTCCTTCTCACCCACCTTTCGTTTGTGATGCATGCATGTGGC
GTTCAGGCCAAATGTTTGTCATCACCACACCGTAATTGTACCCCTTAACC
ATACACCACAACTGACTCAACACCCCACGCTCACGCGCTCCACAACTGCC
CATTCTCTGCGGACAAGGCGGGAAAATGAGACTCACGCCCCTACGACATC
GACACGACCACCACGTCTCACTCTCCCACTTCCTCATCCACTCCGCACAG
ACCAACCCTATCTCAATCATGGCCAAGACACCCTCCAAGAAGTCCGCCAA
GGCCCCTAAGAAGGCCGGCAAGGGCACCAAGAAGAAGACCCGCGTGGAGA
GCTACGGCTCCTACATCTACAAGGTCCTCAAGCAGGTGCACCCCGACACT
GGTATCTCCAAGCGTGGCGTGTCGATCTTAAATTCCTTCATTGGCGACAT
CTTCGACCGCCTCGCCACTGAGGCCGGCAAGCTGGCCCGCTACACGAAGA
AGTCTACCCTGTCTTCCCGCGAGGTGCAGACAGCTGTCCGCCTCACCCTC
CCCGGTGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCCGTCAC
CAAGTACACCTCCAGCTCCTAAACAGTTCTGGAAGTGACTCGTGGCGAAG
CTCACCAAAGCAACAAGACGAGAAAGATATCCAACCAGCAGAGGCCT
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protein sequence of NO10G02080.1

>NO10G02080.1-protein ID=NO10G02080.1-protein|Name=NO10G02080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=149bp
MRLTPLRHRHDHHVSLSHFLIHSAQTNPISIMAKTPSKKSAKAPKKAGKG
TKKKTRVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEA
GKLARYTKKSTLSSREVQTAVRLTLPGELAKHAVSEGTKAVTKYTSSS*
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mRNA from alignment at chr10:572569..573315+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G02080.1 ID=NO10G02080.1|Name=NO10G02080.1|organism=Nannochloropsis oceanica|type=mRNA|length=747bp|location=Sequence derived from alignment at chr10:572569..573315+ (Nannochloropsis oceanica)
CAAATAACCACTTCGAGGGTTCTTGCGTTCACTCCGCGCAGTCACTTGTG
TCTGTCTTCTCCTTCTCACCCACCTTTCGTTTGTGATGCATGCATGTGGC
GTTCAGGCCAAATGTTTGTCATCACCACACCGTAATTGTACCCCTTAACC
ATACACCACAACTGACTCAACACCCCACGCTCACGCGCTCCACAACTGCC
CATTCTCTGCGGACAAGGCGGGAAAATGAGACTCACGCCCCTACGACATC
GACACGACCACCACGTCTCACTCTCCCACTTCCTCATCCACTCCGCACAG
ACCAACCCTATCTCAATCATGGCCAAGACACCCTCCAAGAAGTCCGCCAA
GGCCCCTAAGAAGGCCGGCAAGGGCACCAAGAAGAAGACCCGCGTGGAGA
GCTACGGCTCCTACATCTACAAGGTCCTCAAGCAGGTGCACCCCGACACT
GGTATCTCCAAGCGTGGCGTGTCGATCTTAAATTCCTTCATTGGCGACAT
CTTCGACCGCCTCGCCACTGAGGCCGGCAAGCTGGCCCGCTACACGAAGA
AGTCTACCCTGTCTTCCCGCGAGGTGCAGACAGCTGTCCGCCTCACCCTC
CCCGGTGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCCGTCAC
CAAGTACACCTCCAGCTCCTAAACAGTTCTGGAAGTGACTCGTGGCGAAG
CTCACCAAAGCAACAAGACGAGAAAGATATCCAACCAGCAGAGGCCT
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Coding sequence (CDS) from alignment at chr10:572569..573315+

>NO10G02080.1 ID=NO10G02080.1|Name=NO10G02080.1|organism=Nannochloropsis oceanica|type=CDS|length=447bp|location=Sequence derived from alignment at chr10:572569..573315+ (Nannochloropsis oceanica)
ATGAGACTCACGCCCCTACGACATCGACACGACCACCACGTCTCACTCTC
CCACTTCCTCATCCACTCCGCACAGACCAACCCTATCTCAATCATGGCCA
AGACACCCTCCAAGAAGTCCGCCAAGGCCCCTAAGAAGGCCGGCAAGGGC
ACCAAGAAGAAGACCCGCGTGGAGAGCTACGGCTCCTACATCTACAAGGT
CCTCAAGCAGGTGCACCCCGACACTGGTATCTCCAAGCGTGGCGTGTCGA
TCTTAAATTCCTTCATTGGCGACATCTTCGACCGCCTCGCCACTGAGGCC
GGCAAGCTGGCCCGCTACACGAAGAAGTCTACCCTGTCTTCCCGCGAGGT
GCAGACAGCTGTCCGCCTCACCCTCCCCGGTGAGCTGGCCAAGCACGCCG
TCTCCGAGGGCACCAAGGCCGTCACCAAGTACACCTCCAGCTCCTAA
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Synonyms
Publications