NO10G01970, NO10G01970 (gene) Nannochloropsis oceanica

Overview
NameNO10G01970
Unique NameNO10G01970
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2974
Alignment locationchr10:546953..549926 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:546953..549926 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO10G01970 vs. NCBI_GenBank
Match: EWM25350.1 (hypothetical protein Naga_100005g61 [Nannochloropsis gaditana])

HSP 1 Score: 676.8 bits (1745), Expect = 8.500e-191
Identity = 387/842 (45.96%), Postives = 495/842 (58.79%), Query Frame = 0 
Query:    1 MSFFAVAEGITVPGLQGAEVAGGGGQEPGTEDAEEDWWKCLIRFDPDTVGLGSHRCAFYILDARPSQGYSVLHTWRSEPNSELLEMHCCNKTRECWTLEKAVGENGEVVLVRYRPGSDGAGRVAVAIPATEATFSVSQNGTVTLCLPSGVVEFWRCGFSDSQVSELHRVGMLTLSSILGTNTQELLFNHLVLVGPLLLVGTSTDLWMVQLRGLVPIWGTTGTEXXXXXXXXXXXXXXXXSGMPTTES----SQPRHHHDGPLGRLGNREDMLDCAVPEQDGCFLTSFANQSSPSQAHA----KQYGDMSSTAMVLARLSFHRPRYFLSEVQVLAVGSTWVELLLVSGQAACLYRVANLRAGTQEDVFSRSS------DSSGDVAVVLRLADMGFNTKVLATAKGTSPENPWLFVLTLSGIEVWCLPPPGYRPGELSPCRLLVQRLEYRQRLDRLPPIGMLVTRKTLVLLANPPGHTPSSLPEMLFHTVPRPSLARIPELKSGV--SYCARRSVEPGGAFGIGYGLVALQALPLATVYQQLRKEVKRALPLGDAAQDEGAEGDQEDFLATRFVKGELLDSSVYGIQPARVIHESGTELLTLLFALLHDAASAAQDTEDNGALYWRKEEENEDR----SEKVLEIFRRMHARRLYRCLAQDCASFLGILWLEP-LRGVPADMSRACDWFVKSSTPILDVCTKFFVLWHSDKSSQXXXXXXXXXXXXXXXXXTLSVSSVSTAFGAKFVAFIQRRCSRIEYEPEEDREVGKKGKAVEKGEDEEEIWQVTWPEIVTLGCDLGGEDFLDWVVLHSWLPSLKSCQELLKRLATNTRGDRRDELLSELAR 822
            M FFA AEGI  P   G   A    ++   E A E+WWKCL   D DTVGLGS+ C+F ILD RPSQGY+ L++WRSE   ELL+M  C KT+E WTLEK +GE+  ++LVRY        RV   I + EA  SVS NGTVTL LP G+VEFWR         E+ R+G+L+L  ILG + + +LF H VL GP+L +GTS+D+W VQLR       T                     G+   +S      P  +   PLG   +R+DMLDCA+PEQD C+  +  +Q            K   + +  AMVLAR+ FHRP Y +SE++V++VGSTWVELLLVSGQ ACLYRV+ LR GT ED    SS      D     AVV RLAD+   TKVLATAKG + E PWLF LTLSGIEVWCLPP G+RP + S  RLLVQRLEYRQRL+RLPP+ M+ T   ++ LANP G TP SL EMLFHTVPRPSLAR PEL SGV  S      + P GAF IGYGL++L  L LA +Y+QLR E+  AL + +           EDF ATRFV+GE+LDSSVYGIQ  RV+++SGTELL +L+A L  AA       +  ++ WR EE   DR     + ++E  RR H  +LYR   +DCA+ LG+L L+P   GV +D  +ACDWF  S+TP+L VC K   L  + K +                   L             V F+++RCSR++   EE R   K+   + +G    +IW     +++TL CD+G E FL W VLHSWLP L  C+++L+ +      + R++LL  L +
Sbjct:    1 MPFFAAAEGIVAPD-PGQIKAVYEDEDSPKEPAREEWWKCLALLDSDTVGLGSNLCSFCILDVRPSQGYTTLYSWRSEVGLELLDMQFCRKTKEWWTLEKKLGESQNLMLVRYSDRPRTGERVVALISSNEAVLSVSINGTVTLSLPGGIVEFWRYISLHKHTQEIRRLGILSLEPILGVSMEHVLFTHAVLTGPVLTLGTSSDVWFVQLRR-----KTLQAACKESKRGLKEDITYDTQGLLDCQSGGVGGLPACYEGCPLGSFIDRDDMLDCALPEQDECYAGTLRDQERARPKWVPECPKDCPEYTEAAMVLARVKFHRPGYLISEIKVISVGSTWVELLLVSGQGACLYRVSKLRMGTHEDAVLLSSSEALRGDGREGAAVVFRLADLQLKTKVLATAKGAAAEAPWLFALTLSGIEVWCLPPSGHRPADFSSSRLLVQRLEYRQRLERLPPVSMVATGNAVIFLANPHGQTPPSLAEMLFHTVPRPSLARTPELSSGVLDSDSYNGPITPDGAFSIGYGLLSLHTLSLAEIYEQLRTEIMHALLMEEGXXXXXXXXXXEDFAATRFVEGEMLDSSVYGIQSPRVVYQSGTELLAILYAHLRVAADVG--GMECSSIVWRSEEYKMDREGLNDDSIVERARRRHVEKLYRQQQKDCATILGMLCLDPRAEGVSSDTLQACDWFSDSNTPLLTVCIKLLKL-RTKKDAFATKEQQQTRPMARAESAALRRDPAGL-----LVHFLRKRCSRMDNWIEEKRLEEKRPCQIIEGRSSLDIWS----DVLTLCCDIGEEKFLSWAVLHSWLPRLPECRDVLRHIIDTRCFESREKLLMALVK 824
The following BLAST results are available for this feature:
BLAST of NO10G01970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25350.18.500e-19145.96hypothetical protein Naga_100005g61 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL054nonsL054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR012ngnoR012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001062NSK001062Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G01970.1NO10G01970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586150gene_4016Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100005g61gene5092Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G01970.1NO10G01970.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G01970 ID=NO10G01970|Name=NO10G01970|organism=Nannochloropsis oceanica|type=gene|length=2974bp
ATGTCTTTTTTCGCGGTTGCAGAAGGCATCACGGTGCCGGGCCTGCAGGG
GGCGGAGGTGGCAGGGGGGGGAGGTCAGGAGCCTGGAACAGAGGACGCTG
AAGAAGACTGGTGGAAATGCCTGATCCGCTTTGATCCCGACACAGgtaag
acggagttgtacatttgttgccgcgagggggaaggacgaatagtgactct
ctttctatgccatcgtgtattcacgtttatgctcagTTGGCCTGGGCTCC
CACCGGTGCGCTTTTTACATCCTTGACGCGAGGCCCAGCCAAGGGTACTC
GGTCCTACATACTTGGCGGTCCGAGCCGAACTCGGAGCTCCTGGAGATGC
ACTGTTGCAATAAAACAAGAGAGTGCTGGACTCTGGAGAAAGCTGTCGGA
GAAAACGGGGAGGTCGTGCTCGTCAGATACCGACCAGGCTCTGATGGTGC
AGGGCGAGTGGCTGTAGCCATTCCTGCGACCGAAGCGACCTTCAGgtaag
tttatttttttcttgcgttggttgattcgttcttatgcaatcgcaccgct
ttttgaaaataggacaagggaaatttatcgctgttttctactatatttgt
cacccgacacaataatatagCGTGAGCCAGAACGGGACGGTGACACTCTG
CTTACCCAGCGGGGTCGTTGAGTTTTGGAGATGTGGCTTTTCTGACAGCC
AGGTGTCAGAGCTGCACCGGGTGGGGATGTTGACGTTAAGTTCGATACTT
GGCACCAATACACAAGAACTGTTGTTTAATCATTTGGTGCTAGTCGGACC
CCTGTTGTTGGTTGGAACTTCCACTGACTTGTGGATGGTCCAACTGAGAG
GCCTTGTGCCCATCTGGGGCACGACGGGCACCGAAGAAACAGATGAGGAA
GAGAATGAAAATGAAGAAGACGAGAACAGGGCAAGCGGCATGCCAACCAC
CGAGAGTAGTCAGCCACGGCACCACCACGACGGGCCTTTGGGTAGGCTGG
GAAATCGAGAGGATATGTTGGACTGCGCTGTGCCGGAGCAGGATGGGTGT
TTTCTCACCAGCTTCGCAAATCAGTCATCTCCTAGCCAAGCTCACGCCAA
ACAATATGGGGACATGTCAAGCACCGCTATGGTTCTAGCCCGTCTGAGCT
TTCACCGGCCCCGATACTTCTTATCGGAAGTCCAGGTGTTAGCCGTAGGT
TCGACCTGGGTGGAGTTGCTTCTGGTCTCAGGCCAAGCCGCATGTTTATA
CCGGGTTGCCAACTTGCGAGCAGGGACGCAGGAGGACGTCTTTAGCAGGA
GTAGTGATAGCAGTGGCGATGTGGCTGTCGTCCTTCGCCTGGCTGATATG
GGGTTCAACACTAAGGTGCTAGCTACCGCGAAGGGGACTTCTCCAGAAAA
CCCCTGGCTCTTCGTCCTGACCCTGTCAGGGATAGAAGTGTGGTGCCTCC
CTCCCCCAGGGTATCGCCCTGGCGAACTTTCTCCGTGCCGCCTGCTGGTG
CAGCGACTAGAGTACCGACAGCGCCTGGATCGACTGCCACCTATCGGCAT
GCTGGTCACGCGGAAAACCCTCGTCCTGCTGGCTAATCCTCCAGGCCACA
CACCATCTTCCTTGCCCGAGATGCTTTTTCACACTGTGCCCCGTCCTTCG
CTGGCACGCATACCCGAGCTGAAATCGGGTGTGAGTTATTGCGCGAGACG
ATCCGTCGAGCCAGGTGGGgtacgtattgatttagaaatgagggagggaa
acgttcgaggatcctgagaggcggacaactttaaaggattcttcccgaac
accataaatcgtcatcaaaatccgatatttcgactttcacgttcacttgt
tacacagGCTTTTGGCATCGGATATGGCCTTGTGGCATTGCAGGCCCTGC
CCTTAGCCACCGTTTACCAGCAGCTTCGTAAAGAGGTGAAACGAGCTTTG
CCGCTGGGCGATGCGGCACAGGACGAGGGCGCAGAAGGGGATCAGGAGGA
CTTTCTTGCCACTCGCTTTGTGAAAGGAGAGTTGTTAGACTCGTCTGTCT
ATGGGATACAGCCCGCGCGTGTCATTCATGAGAGCGGTACTGAGCTCCTG
ACACTCCTGTTTGCGCTGCTGCACGACGCAGCCAGCGCCGCCCAAGATAC
GGAAGACAATGGCGCGCTATATTGGAGGAAGGAAGAGGAAAATGAAGATC
GGAGTGAAAAGGTGCTGGAGATATTCCGGAGGATGCATGCCAGGAGATTG
TACCGCTGCCTAGCCCAAGATTGTGCTTCCTTTTTAGGAATTCTCTGGCT
CGAGCCACTgtacgttgtgttttgctttgcctcttttcattctcttttga
cactttcccatcgtcctgggccaaatacacgactttctttcctttctttc
tgatagatcgagcaactcttctgtttcccccatttcctctgtcccatact
cccccagGCGAGGCGTTCCTGCTGACATGTCAAGGGCCTGCGACTGGTTT
GTCAAAAGCAGCACGCCAATCTTGGATGTGTGTACGAAGTTCTTTGTTCT
GTGGCACAGCGATAAAAGCAGTCAGTCGGAGAAGAAGGAGGAGGAGAAGG
AAGGGGAAGATAAGAAAAATGAGCATACACTCTCAGTTTCGTCCGTCTCA
ACAGCCTTTGGCGCGAAGTTTGTGGCATTCATCCAAAGACGATGCTCACG
CATCGAATATGAGCCAGAGGAGGACAGGGAGGTCGGGAAAAAGGGGAAAG
CAGTAGAGAAGGGAGAGGACGAGGAGGAAATTTGGCAAGTGACATGGCCC
GAGATCGTGACGCTGGGCTGTGACTTGGGTGGGGAGGACTTTCTAGATTG
GGTCGTGCTACATTCATGGCTGCCCAGCCTAAAGTCATGTCAAGAGTTGC
TCAAGCGCCTTGCCACAAACACACGCGGCGACCGAAGAGATGAATTGCTA
TCAGAGCTTGCGAGGTGGACATAA
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protein sequence of NO10G01970.1

>NO10G01970.1-protein ID=NO10G01970.1-protein|Name=NO10G01970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=824bp
MSFFAVAEGITVPGLQGAEVAGGGGQEPGTEDAEEDWWKCLIRFDPDTVG
LGSHRCAFYILDARPSQGYSVLHTWRSEPNSELLEMHCCNKTRECWTLEK
AVGENGEVVLVRYRPGSDGAGRVAVAIPATEATFSVSQNGTVTLCLPSGV
VEFWRCGFSDSQVSELHRVGMLTLSSILGTNTQELLFNHLVLVGPLLLVG
TSTDLWMVQLRGLVPIWGTTGTEETDEEENENEEDENRASGMPTTESSQP
RHHHDGPLGRLGNREDMLDCAVPEQDGCFLTSFANQSSPSQAHAKQYGDM
SSTAMVLARLSFHRPRYFLSEVQVLAVGSTWVELLLVSGQAACLYRVANL
RAGTQEDVFSRSSDSSGDVAVVLRLADMGFNTKVLATAKGTSPENPWLFV
LTLSGIEVWCLPPPGYRPGELSPCRLLVQRLEYRQRLDRLPPIGMLVTRK
TLVLLANPPGHTPSSLPEMLFHTVPRPSLARIPELKSGVSYCARRSVEPG
GAFGIGYGLVALQALPLATVYQQLRKEVKRALPLGDAAQDEGAEGDQEDF
LATRFVKGELLDSSVYGIQPARVIHESGTELLTLLFALLHDAASAAQDTE
DNGALYWRKEEENEDRSEKVLEIFRRMHARRLYRCLAQDCASFLGILWLE
PLRGVPADMSRACDWFVKSSTPILDVCTKFFVLWHSDKSSQSEKKEEEKE
GEDKKNEHTLSVSSVSTAFGAKFVAFIQRRCSRIEYEPEEDREVGKKGKA
VEKGEDEEEIWQVTWPEIVTLGCDLGGEDFLDWVVLHSWLPSLKSCQELL
KRLATNTRGDRRDELLSELARWT*
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Synonyms
Publications