NO10G01920, NO10G01920 (gene) Nannochloropsis oceanica

Overview
NameNO10G01920
Unique NameNO10G01920
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1064
Alignment locationchr10:533650..534713 -

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Properties
Property NameValue
DescriptionS-phase kinase-associated protein 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:533650..534713 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006511ubiquitin-dependent protein catabolic process
GO:0019538protein metabolic process
GO:0009987cellular process
GO:0009056catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR036296SKP1-like_dim_sf
IPR011333BTB/POZ_fold
IPR016072Skp1_comp_dimer
IPR016073Skp1_comp_POZ
IPR001232SKP1-like
Homology
[Close]
BLAST of NO10G01920 vs. NCBI_GenBank
Match: EWM25403.1 (glycoprotein fp21 [Nannochloropsis gaditana])

HSP 1 Score: 330.5 bits (846), Expect = 3.200e-87
Identity = 161/170 (94.71%), Postives = 168/170 (98.82%), Query Frame = 0 
Query:    1 MSDEAKGTESGKVVHLVSQEGDQYEVEVAVCKMSELVKTMLPDDDDNTDTQEIPLPNVKNSVLAKVIEFCKHHKDDPMNDIEKPLKSANMHEVVQDWYANFVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEEEAQVREENKWCE 171
            M D+AKG ESGKVVHLVSQEGDQYEVEV+VCKMSELVKTMLPDDDD+++TQEIPLPNVKN+VLAKVIEFCKHHK+DPMNDIEKPLKSANMHEVVQDWYANFVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEEEAQVREENKWCE
Sbjct:   49 MGDKAKGAESGKVVHLVSQEGDQYEVEVSVCKMSELVKTMLPDDDDSSETQEIPLPNVKNNVLAKVIEFCKHHKEDPMNDIEKPLKSANMHEVVQDWYANFVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEEEAQVREENKWCE 218
[Close]
BLAST of NO10G01920 vs. NCBI_GenBank
Match: XP_009033202.1 (hypothetical protein AURANDRAFT_58667 [Aureococcus anophagefferens] >EGB12114.1 hypothetical protein AURANDRAFT_58667 [Aureococcus anophagefferens])

HSP 1 Score: 262.3 bits (669), Expect = 1.100e-66
Identity = 128/156 (82.05%), Postives = 146/156 (93.59%), Query Frame = 0 
Query:   17 VSQEGDQYEVEVAVCKMSELVKTMLPDD-DDNTDTQEIPLPNVKNSVLAKVIEFCKHHKDDPMNDIEKPLKSANMHEVVQDWYANFVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEEEAQVREENKWCEE 172
            +SQEGDQ+EVEV V KMSELVKTM+P++ D+  + QEIPLPNVK+ VLAKVIEFC+ + ++PM++IEKPLKSANMHEVVQ+WYAN+V+VDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIR+TFNI NDFTPEEEAQVREENKWCEE
Sbjct:    1 MSQEGDQFEVEVKVAKMSELVKTMIPEEADEEEEAQEIPLPNVKSHVLAKVIEFCRRYAEEPMSEIEKPLKSANMHEVVQEWYANYVDVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRKTFNIVNDFTPEEEAQVREENKWCEE 156
[Close]
BLAST of NO10G01920 vs. NCBI_GenBank
Match: CBJ48672.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 260.0 bits (663), Expect = 5.200e-66
Identity = 128/168 (76.19%), Postives = 148/168 (88.10%), Query Frame = 0 
Query:    5 AKGTESGKVVHLVSQEGDQYEVEVAVCKMSELVKTMLPDD-DDNTDTQEIPLPNVKNSVLAKVIEFCKHHKDDPMNDIEKPLKSANMHEVVQDWYANFVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEEEAQVREENKWCEE 172
            A  TE  + VHLVSQEG+ ++++V+V KMS LVKTM+ +D +++ D QEIPLPNVK SVL+KVIEFC H+K+DPMN+IEKPLKSANMH+VVQ+WYA FV V QE LFELILAANYMDIKPLLDLTCATVASMIKGKT EEIR+TFNI NDFTPEEEAQVREENKWCE+
Sbjct:   15 ADETEDTRSVHLVSQEGESFDIKVSVAKMSNLVKTMIDEDAEEDGDAQEIPLPNVKASVLSKVIEFCAHYKEDPMNEIEKPLKSANMHDVVQEWYAKFVEVQQETLFELILAANYMDIKPLLDLTCATVASMIKGKTAEEIRKTFNIVNDFTPEEEAQVREENKWCED 182
[Close]
BLAST of NO10G01920 vs. NCBI_GenBank
Match: XP_024576282.1 (glycoprotein fp21 [Plasmopara halstedii] >CEG39913.1 glycoprotein fp21 [Plasmopara halstedii])

HSP 1 Score: 245.4 bits (625), Expect = 1.300e-61
Identity = 119/169 (70.41%), Postives = 141/169 (83.43%), Query Frame = 0 
Query:    3 DEAKGTESGKVVHLVSQEGDQYEVEVAVCKMSELVKTMLPDDDDNTDTQEIPLPNVKNSVLAKVIEFCKHHKDDPMNDIEKPLKSANMHEVVQDWYANFVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEEEAQVREENKWCEE 172
            D  K  E  + V+LVS +GD +EV  +V  MSELVKT++ DD D+ + QEIPLPNVK+ VL+KVIEFC HH ++PM +IEKPLKSA+MH+VV DW ANFV+++QE+LFELILAANYMDIK LLDL CA VASMIKGKTP+EIR TFNI NDFTPEEEAQ+REENKWCEE
Sbjct:    9 DTPKQEEDSRKVNLVSMDGDSFEVSRSVAAMSELVKTLISDDADDDEVQEIPLPNVKSPVLSKVIEFCSHHNNNPMREIEKPLKSADMHDVVSDWDANFVDIEQEILFELILAANYMDIKSLLDLACAKVASMIKGKTPQEIRDTFNIVNDFTPEEEAQIREENKWCEE 177
[Close]
BLAST of NO10G01920 vs. NCBI_GenBank
Match: ETI45264.1 (hypothetical protein F443_10095 [Phytophthora parasitica P1569] >ETK85222.1 hypothetical protein L915_09886 [Phytophthora parasitica] >ETL38646.1 hypothetical protein L916_09795 [Phytophthora parasitica] >ETL91770.1 hypothetical protein L917_09713 [Phytophthora parasitica] >ETM45060.1 hypothetical protein L914_09762 [Phytophthora parasitica] >ETO73903.1 hypothetical protein F444_10192 [Phytophthora parasitica P1976] >ETP15080.1 hypothetical protein F441_10035 [Phytophthora parasitica CJ01A1] >ETP43140.1 hypothetical protein F442_10006 [Phytophthora parasitica P10297])

HSP 1 Score: 244.2 bits (622), Expect = 3.000e-61
Identity = 118/166 (71.08%), Postives = 139/166 (83.73%), Query Frame = 0 
Query:    6 KGTESGKVVHLVSQEGDQYEVEVAVCKMSELVKTMLPDDDDNTDTQEIPLPNVKNSVLAKVIEFCKHHKDDPMNDIEKPLKSANMHEVVQDWYANFVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEEEAQVREENKWCEE 172
            K  E  + V+LVS +GD +EV   V  MSELVKT++ DD D+ + QEIPLPNVK+ VL+KVIEFC HH ++PM +IEKPLKSA+MH+VV DW ANFV+++QE+LFELILAANYMDIK LLDL CA VASMIKGKTP+EIR TFNI NDFTPEEEAQ+REENKWCEE
Sbjct:   13 KQEEDSRKVNLVSMDGDSFEVSRGVAAMSELVKTLISDDADDDEVQEIPLPNVKSPVLSKVIEFCSHHHNNPMREIEKPLKSADMHDVVSDWDANFVDIEQEILFELILAANYMDIKSLLDLACAKVASMIKGKTPQEIRETFNIVNDFTPEEEAQIREENKWCEE 178
[Close]
BLAST of NO10G01920 vs. NCBI_GenBank
Match: XP_002907933.1 (S-phase kinase-associated protein 1A [Phytophthora infestans T30-4] >EEY61016.1 S-phase kinase-associated protein 1A [Phytophthora infestans T30-4])

HSP 1 Score: 244.2 bits (622), Expect = 3.000e-61
Identity = 118/169 (69.82%), Postives = 140/169 (82.84%), Query Frame = 0 
Query:    3 DEAKGTESGKVVHLVSQEGDQYEVEVAVCKMSELVKTMLPDDDDNTDTQEIPLPNVKNSVLAKVIEFCKHHKDDPMNDIEKPLKSANMHEVVQDWYANFVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEEEAQVREENKWCEE 172
            D  +  E  + V+LVS +GD +EV   V  MSELVKT++ DD D+ + QEIPLPNVK+ VL+KVIEFC HH ++PM +IEKPLKSA+MH+VV DW ANFV+++QE+LFELILAANYMDIK LLDL CA VASMIKGKTP+EIR TFNI NDFTPEEEAQ+REENKWCEE
Sbjct:   10 DTPRQEEDSRKVNLVSMDGDSFEVSRGVAAMSELVKTLISDDADDDEVQEIPLPNVKSPVLSKVIEFCSHHHNNPMREIEKPLKSADMHDVVSDWDANFVDIEQEILFELILAANYMDIKSLLDLACAKVASMIKGKTPQEIRETFNIVNDFTPEEEAQIREENKWCEE 178
[Close]
BLAST of NO10G01920 vs. NCBI_GenBank
Match: XP_002294707.1 (hypothetical protein THAPSDRAFT_38460, partial [Thalassiosira pseudonana CCMP1335] >EED88067.1 hypothetical protein THAPSDRAFT_38460, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 243.8 bits (621), Expect = 3.900e-61
Identity = 121/155 (78.06%), Postives = 137/155 (88.39%), Query Frame = 0 
Query:   18 SQEGDQYEVEVAVCKMSELVKTMLPDD-DDNTDTQEIPLPNVKNSVLAKVIEFCKHHKDDPMNDIEKPLKSANMHEVVQDWYANFVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEEEAQVREENKWCEE 172
            S+EGD + V++ V +MSELVK ML DD DD+ +  EIPLPNVK++VL KVIEFCKHH+ +PM +IEKPLKSA M EVVQ WYA+FVNV+Q LLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIR+TFNI NDF+PEEEAQVREENKWCEE
Sbjct:    1 SKEGDTFPVDIEVARMSELVKGMLEDDADDDEEATEIPLPNVKSTVLKKVIEFCKHHRSEPMTEIEKPLKSAAMAEVVQKWYADFVNVEQVLLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRKTFNIANDFSPEEEAQVREENKWCEE 155
[Close]
BLAST of NO10G01920 vs. NCBI_GenBank
Match: XP_009526241.1 (hypothetical protein PHYSODRAFT_354552 [Phytophthora sojae] >EGZ17183.1 hypothetical protein PHYSODRAFT_354552 [Phytophthora sojae])

HSP 1 Score: 243.4 bits (620), Expect = 5.100e-61
Identity = 117/163 (71.78%), Postives = 138/163 (84.66%), Query Frame = 0 
Query:    9 ESGKVVHLVSQEGDQYEVEVAVCKMSELVKTMLPDDDDNTDTQEIPLPNVKNSVLAKVIEFCKHHKDDPMNDIEKPLKSANMHEVVQDWYANFVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEEEAQVREENKWCEE 172
            E  + V+LVS +GD +EV  +V  MSELVKT++ DD D+ + QEIPLPNVK+ VL+KVIEFC HH + PM +IEKPLKSA+MH+VV DW ANFV+++QE+LFELILAANYMDIK LLDL CA VASMIKGKTP+EIR TFNI NDFTPEEEAQ+REENKWCEE
Sbjct:   16 EDSRKVNLVSMDGDSFEVSRSVAAMSELVKTLISDDADDDEVQEIPLPNVKSPVLSKVIEFCSHHHNSPMREIEKPLKSADMHDVVSDWDANFVDIEQEILFELILAANYMDIKSLLDLACAKVASMIKGKTPQEIRETFNIVNDFTPEEEAQIREENKWCEE 178
[Close]
BLAST of NO10G01920 vs. NCBI_GenBank
Match: GAX92289.1 (Skp1-like protein [Pythium insidiosum])

HSP 1 Score: 243.0 bits (619), Expect = 6.600e-61
Identity = 116/163 (71.17%), Postives = 140/163 (85.89%), Query Frame = 0 
Query:    9 ESGKVVHLVSQEGDQYEVEVAVCKMSELVKTMLPDDDDNTDTQEIPLPNVKNSVLAKVIEFCKHHKDDPMNDIEKPLKSANMHEVVQDWYANFVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEEEAQVREENKWCEE 172
            E  + V+LVS +GD +EV  ++  MSELVKT++ D+ D+ + QEIPLPNVK+SVL+KVIEFC HH ++PM +IEKPLKSA+MH+VV DW ANFV+V+Q+LLFELILAANYMDIK LLDL CA VASMIKGKTP+EIR TFNI NDFTPEEE+Q+REENKWCEE
Sbjct:   15 EDTRKVNLVSMDGDSFEVSRSIASMSELVKTLISDEQDDDEVQEIPLPNVKSSVLSKVIEFCSHHHNNPMREIEKPLKSADMHDVVSDWDANFVDVEQDLLFELILAANYMDIKSLLDLACAKVASMIKGKTPQEIRETFNIVNDFTPEEESQIREENKWCEE 177
[Close]
BLAST of NO10G01920 vs. NCBI_GenBank
Match: OQR91138.1 (S-phase kinase-associated protein 1A [Thraustotheca clavata])

HSP 1 Score: 242.7 bits (618), Expect = 8.600e-61
Identity = 115/163 (70.55%), Postives = 143/163 (87.73%), Query Frame = 0 
Query:    9 ESGKVVHLVSQEGDQYEVEVAVCKMSELVKTMLPDDDDNTDTQEIPLPNVKNSVLAKVIEFCKHHKDDPMNDIEKPLKSANMHEVVQDWYANFVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEEEAQVREENKWCEE 172
            +  + V+LVSQ+GD +EV  +V   SELVKTM+ D+ D+ D QEIPLPNVK++VL+KVIEFC+HH ++PM DIEKPL+S++MH+VV +W ANFV+++Q+LLFELILAANYMDIK LLDL+CA VASMIKGKTPEEIR TFNITNDFTPEEE+Q+REENKWCE+
Sbjct:    4 DDSRKVNLVSQDGDSFEVPRSVACTSELVKTMVADEQDDDDVQEIPLPNVKSTVLSKVIEFCRHHHNNPMQDIEKPLRSSDMHDVVSEWDANFVDIEQDLLFELILAANYMDIKSLLDLSCAKVASMIKGKTPEEIRETFNITNDFTPEEESQIREENKWCED 166
The following BLAST results are available for this feature:
BLAST of NO10G01920 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25403.13.200e-8794.71glycoprotein fp21 [Nannochloropsis gaditana][more]
XP_009033202.11.100e-6682.05hypothetical protein AURANDRAFT_58667 [Aureococcus... [more]
CBJ48672.15.200e-6676.19conserved unknown protein [Ectocarpus siliculosus][more]
XP_024576282.11.300e-6170.41glycoprotein fp21 [Plasmopara halstedii] >CEG39913... [more]
ETI45264.13.000e-6171.08hypothetical protein F443_10095 [Phytophthora para... [more]
XP_002907933.13.000e-6169.82S-phase kinase-associated protein 1A [Phytophthora... [more]
XP_002294707.13.900e-6178.06hypothetical protein THAPSDRAFT_38460, partial [Th... [more]
XP_009526241.15.100e-6171.78hypothetical protein PHYSODRAFT_354552 [Phytophtho... [more]
GAX92289.16.600e-6171.17Skp1-like protein [Pythium insidiosum][more]
OQR91138.18.600e-6170.55S-phase kinase-associated protein 1A [Thraustothec... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL054nonsL054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR012ngnoR012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001068NSK001068Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G01920.1NO10G01920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586171gene_4021Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100005g56gene5087Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G01920.1NO10G01920.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G01920 ID=NO10G01920|Name=NO10G01920|organism=Nannochloropsis oceanica|type=gene|length=1064bp
ATGAGTGACGAAGCCAAGGGAACGGAGTCCGGCAAGGTGGTGCACCTGGT
CAGCCAGGAAGGCGACCAGTACGAGGTAGAAGTGGCAGTCTGCAAGATGA
GCGAGCTTGTCAAAACCATGCTTCCCGATGgtatgggcgaggggggcaag
gggcgggaggggcatgcacgcggaaggagtacatacacggagaaagtgga
gtacgaaaagcggagggcaaggacatggcccaccggaaagaaagagcttc
tccctcccgtacttccctgggggtgcaaattaaataacggccaaacgctt
ctaaccatcaccattcctccctttttttcttcgcaccgcattaaacaccc
ccgctccctcttcacttccctccccaaatagACGATGACAACACCGACAC
GCAGGAGATCCCGTTGCCCAACGTCAAGAACAGCGTGCTGGCCAAAGTGA
TCGAGTTCTGTAAGCATCATAAGGATGATCCAATGAATGACATCGAAAAG
gtgaggttccttatgggttttggggaaaggagaaggacatgtcttgatat
gcccgtcaatcggtacccagaacctgtgtctgtgtgtggttgctcgctct
tttattattttttgttgtgtgcccgtcctaacaattaagtctgtataaat
cttactcccctctccctcttccttatcgccaaacacatctttatgcactc
ctcatatccttaccctccatcccccccccttatttatctgctatcccctg
ctcttactcactcatccctcttttgccctcccctcgttctacagCCTCTG
AAGAGCGCGAACATGCACGAGGTGGTGCAGGACTGGTATGCGAACTTCGT
GAACGTGGACCAAGAGCTGCTATTCGAGCTCATCCTCGCCGCCAACTACA
TGGACATAAAACCCTTGCTAGACCTGACCTGCGCCACAGTGGCCAGCATG
ATCAAGGGAAAGACGCCCGAGGAGATCCGTCGCACCTTCAACATCACAAA
CGACTTCACTCCCGAGGAGGAGGCGCAGGTGCGTGAGGAGAACAAGTGGT
GCGAGGAGGTCTAA
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protein sequence of NO10G01920.1

>NO10G01920.1-protein ID=NO10G01920.1-protein|Name=NO10G01920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=173bp
MSDEAKGTESGKVVHLVSQEGDQYEVEVAVCKMSELVKTMLPDDDDNTDT
QEIPLPNVKNSVLAKVIEFCKHHKDDPMNDIEKPLKSANMHEVVQDWYAN
FVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNI
TNDFTPEEEAQVREENKWCEEV*
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Synonyms
Publications