NO10G01920.1, NO10G01920.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01920.1
Unique NameNO10G01920.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length519
Alignment locationchr10:533650..534713 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:533650..534713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G01920.1 vs.
Match: EWM25403.1 (glycoprotein fp21 [Nannochloropsis gaditana])

HSP 1 Score: 330.5 bits (846), Expect = 3.200e-87
Identity = 161/170 (94.71%), Postives = 168/170 (98.82%), Query Frame = 0 
Query:    1 MSDEAKGTESGKVVHLVSQEGDQYEVEVAVCKMSELVKTMLPDDDDNTDTQEIPLPNVKNSVLAKVIEFCKHHKDDPMNDIEKPLKSANMHEVVQDWYANFVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEEEAQVREENKWCE 171
            M D+AKG ESGKVVHLVSQEGDQYEVEV+VCKMSELVKTMLPDDDD+++TQEIPLPNVKN+VLAKVIEFCKHHK+DPMNDIEKPLKSANMHEVVQDWYANFVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEEEAQVREENKWCE
Sbjct:   49 MGDKAKGAESGKVVHLVSQEGDQYEVEVSVCKMSELVKTMLPDDDDSSETQEIPLPNVKNNVLAKVIEFCKHHKEDPMNDIEKPLKSANMHEVVQDWYANFVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEEEAQVREENKWCE 218
The following BLAST results are available for this feature:
BLAST of NO10G01920.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25403.13.200e-8794.71glycoprotein fp21 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01920NO10G01920Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01920.1NO10G01920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01920.1.cds1NO10G01920.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01920.1.cds2NO10G01920.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01920.1.cds3NO10G01920.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01920.1 ID=NO10G01920.1|Name=NO10G01920.1|organism=Nannochloropsis oceanica|type=mRNA|length=519bp
ATGAGTGACGAAGCCAAGGGAACGGAGTCCGGCAAGGTGGTGCACCTGGT
CAGCCAGGAAGGCGACCAGTACGAGGTAGAAGTGGCAGTCTGCAAGATGA
GCGAGCTTGTCAAAACCATGCTTCCCGATGACGATGACAACACCGACACG
CAGGAGATCCCGTTGCCCAACGTCAAGAACAGCGTGCTGGCCAAAGTGAT
CGAGTTCTGTAAGCATCATAAGGATGATCCAATGAATGACATCGAAAAGC
CTCTGAAGAGCGCGAACATGCACGAGGTGGTGCAGGACTGGTATGCGAAC
TTCGTGAACGTGGACCAAGAGCTGCTATTCGAGCTCATCCTCGCCGCCAA
CTACATGGACATAAAACCCTTGCTAGACCTGACCTGCGCCACAGTGGCCA
GCATGATCAAGGGAAAGACGCCCGAGGAGATCCGTCGCACCTTCAACATC
ACAAACGACTTCACTCCCGAGGAGGAGGCGCAGGTGCGTGAGGAGAACAA
GTGGTGCGAGGAGGTCTAA
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protein sequence of NO10G01920.1

>NO10G01920.1-protein ID=NO10G01920.1-protein|Name=NO10G01920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=173bp
MSDEAKGTESGKVVHLVSQEGDQYEVEVAVCKMSELVKTMLPDDDDNTDT
QEIPLPNVKNSVLAKVIEFCKHHKDDPMNDIEKPLKSANMHEVVQDWYAN
FVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNI
TNDFTPEEEAQVREENKWCEEV*
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mRNA from alignment at chr10:533650..534713-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01920.1 ID=NO10G01920.1|Name=NO10G01920.1|organism=Nannochloropsis oceanica|type=mRNA|length=1064bp|location=Sequence derived from alignment at chr10:533650..534713- (Nannochloropsis oceanica)
ATGAGTGACGAAGCCAAGGGAACGGAGTCCGGCAAGGTGGTGCACCTGGT
CAGCCAGGAAGGCGACCAGTACGAGGTAGAAGTGGCAGTCTGCAAGATGA
GCGAGCTTGTCAAAACCATGCTTCCCGATGGTATGGGCGAGGGGGGCAAG
GGGCGGGAGGGGCATGCACGCGGAAGGAGTACATACACGGAGAAAGTGGA
GTACGAAAAGCGGAGGGCAAGGACATGGCCCACCGGAAAGAAAGAGCTTC
TCCCTCCCGTACTTCCCTGGGGGTGCAAATTAAATAACGGCCAAACGCTT
CTAACCATCACCATTCCTCCCTTTTTTTCTTCGCACCGCATTAAACACCC
CCGCTCCCTCTTCACTTCCCTCCCCAAATAGACGATGACAACACCGACAC
GCAGGAGATCCCGTTGCCCAACGTCAAGAACAGCGTGCTGGCCAAAGTGA
TCGAGTTCTGTAAGCATCATAAGGATGATCCAATGAATGACATCGAAAAG
GTGAGGTTCCTTATGGGTTTTGGGGAAAGGAGAAGGACATGTCTTGATAT
GCCCGTCAATCGGTACCCAGAACCTGTGTCTGTGTGTGGTTGCTCGCTCT
TTTATTATTTTTTGTTGTGTGCCCGTCCTAACAATTAAGTCTGTATAAAT
CTTACTCCCCTCTCCCTCTTCCTTATCGCCAAACACATCTTTATGCACTC
CTCATATCCTTACCCTCCATCCCCCCCCCTTATTTATCTGCTATCCCCTG
CTCTTACTCACTCATCCCTCTTTTGCCCTCCCCTCGTTCTACAGCCTCTG
AAGAGCGCGAACATGCACGAGGTGGTGCAGGACTGGTATGCGAACTTCGT
GAACGTGGACCAAGAGCTGCTATTCGAGCTCATCCTCGCCGCCAACTACA
TGGACATAAAACCCTTGCTAGACCTGACCTGCGCCACAGTGGCCAGCATG
ATCAAGGGAAAGACGCCCGAGGAGATCCGTCGCACCTTCAACATCACAAA
CGACTTCACTCCCGAGGAGGAGGCGCAGGTGCGTGAGGAGAACAAGTGGT
GCGAGGAGGTCTAA
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Coding sequence (CDS) from alignment at chr10:533650..534713-

>NO10G01920.1 ID=NO10G01920.1|Name=NO10G01920.1|organism=Nannochloropsis oceanica|type=CDS|length=519bp|location=Sequence derived from alignment at chr10:533650..534713- (Nannochloropsis oceanica)
ATGAGTGACGAAGCCAAGGGAACGGAGTCCGGCAAGGTGGTGCACCTGGT
CAGCCAGGAAGGCGACCAGTACGAGGTAGAAGTGGCAGTCTGCAAGATGA
GCGAGCTTGTCAAAACCATGCTTCCCGATGACGATGACAACACCGACACG
CAGGAGATCCCGTTGCCCAACGTCAAGAACAGCGTGCTGGCCAAAGTGAT
CGAGTTCTGTAAGCATCATAAGGATGATCCAATGAATGACATCGAAAAGC
CTCTGAAGAGCGCGAACATGCACGAGGTGGTGCAGGACTGGTATGCGAAC
TTCGTGAACGTGGACCAAGAGCTGCTATTCGAGCTCATCCTCGCCGCCAA
CTACATGGACATAAAACCCTTGCTAGACCTGACCTGCGCCACAGTGGCCA
GCATGATCAAGGGAAAGACGCCCGAGGAGATCCGTCGCACCTTCAACATC
ACAAACGACTTCACTCCCGAGGAGGAGGCGCAGGTGCGTGAGGAGAACAA
GTGGTGCGAGGAGGTCTAA
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Synonyms
Publications