NO10G01850, NO10G01850 (gene) Nannochloropsis oceanica

Overview
NameNO10G01850
Unique NameNO10G01850
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length939
Alignment locationchr10:519646..520584 +

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Properties
Property NameValue
DescriptionMitochondrial pyruvate carrier
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:519646..520584 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006850mitochondrial pyruvate transmembrane transport
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0005743mitochondrial inner membrane
GO:0016020membrane
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR005336MPC
Homology
[Close]
BLAST of NO10G01850 vs. NCBI_GenBank
Match: EWM25375.1 (Uncharacterized protein family UPF0041 [Nannochloropsis gaditana])

HSP 1 Score: 222.6 bits (566), Expect = 7.000e-55
Identity = 110/129 (85.27%), Postives = 116/129 (89.92%), Query Frame = 0 
Query:    1 MGLSVVPALKARVMAVEFVKNNPRIKAMLDHPAGPFTIHFWAPSFKWGISLANIADFNRPAEFISVPQQLAVTATGIIWSRYSFVITPVNYNLFSVNAFMAVTGSYQLWRKFTTQATPTAPPNSASVSS 130
            M L VV ALKAR++AV F+KNNPR+KA+LDHPAGPFTIHFWAPSFKWGISLANIADFNRPAE ISVPQQLAVTATGIIWSRYSFVITPVNYNLFSVNAFMAVTGSYQLWRKF      TA PNS SV+S
Sbjct:   30 MALGVVTALKARLLAVGFIKNNPRVKAVLDHPAGPFTIHFWAPSFKWGISLANIADFNRPAELISVPQQLAVTATGIIWSRYSFVITPVNYNLFSVNAFMAVTGSYQLWRKF------TATPNSMSVAS 152
[Close]
BLAST of NO10G01850 vs. NCBI_GenBank
Match: CCA17801.1 (CSH putative [Albugo laibachii Nc14])

HSP 1 Score: 165.6 bits (418), Expect = 1.000e-37
Identity = 76/113 (67.26%), Postives = 91/113 (80.53%), Query Frame = 0 
Query:    1 MGLSVVPALKARVMAVEFVKNNPRIKAMLDHPAGPFTIHFWAPSFKWGISLANIADFNRPAEFISVPQQLAVTATGIIWSRYSFVITPVNYNLFSVNAFMAVTGSYQLWRKFT 114
            M   +VP L+A+V+A + V NNP +++ L HPAGPFTIHFWAP+FKWGISLANIAD  R  E IS+PQQ+A+TATG+IWSRYS VITP N+NLFSVN FMA TG  QL+RK T
Sbjct:    1 MFFGIVPRLQAKVLATDIVANNPSVRSFLQHPAGPFTIHFWAPAFKWGISLANIADMRRSPETISLPQQIAITATGVIWSRYSLVITPKNWNLFSVNVFMAGTGLSQLYRKAT 113
[Close]
BLAST of NO10G01850 vs. NCBI_GenBank
Match: CCI42368.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 161.4 bits (407), Expect = 1.900e-36
Identity = 75/108 (69.44%), Postives = 87/108 (80.56%), Query Frame = 0 
Query:    6 VPALKARVMAVEFVKNNPRIKAMLDHPAGPFTIHFWAPSFKWGISLANIADFNRPAEFISVPQQLAVTATGIIWSRYSFVITPVNYNLFSVNAFMAVTGSYQLWRKFT 114
            VP L+A+V+A + V  NP  ++ L HPAGPFTIHFWAP+FKWGISLANIAD  R  E IS+PQQ+A+TATGIIWSRYS VITP N+NLFSVN FMA TG  QL+RK T
Sbjct:    6 VPRLQAKVLAADIVAKNPSFRSFLQHPAGPFTIHFWAPAFKWGISLANIADMRRSPETISLPQQIAITATGIIWSRYSLVITPKNWNLFSVNVFMAATGLTQLFRKAT 113
[Close]
BLAST of NO10G01850 vs. NCBI_GenBank
Match: XP_008899459.1 (hypothetical protein PPTG_07053 [Phytophthora parasitica INRA-310] >ETI55091.1 hypothetical protein F443_02218 [Phytophthora parasitica P1569] >ETK94909.1 hypothetical protein L915_02128 [Phytophthora parasitica] >ETL48302.1 hypothetical protein L916_02092 [Phytophthora parasitica] >ETM01397.1 hypothetical protein L917_02028 [Phytophthora parasitica] >ETM54592.1 hypothetical protein L914_02110 [Phytophthora parasitica] >ETN14781.1 hypothetical protein PPTG_07053 [Phytophthora parasitica INRA-310] >ETO83828.1 hypothetical protein F444_02224 [Phytophthora parasitica P1976] >ETP24872.1 hypothetical protein F441_02191 [Phytophthora parasitica CJ01A1] >ETP52889.1 hypothetical protein F442_02176 [Phytophthora parasitica P10297] >KUF81266.1 hypothetical protein AM587_10014612 [Phytophthora nicotianae] >KUF96144.1 Kinesin protein [Phytophthora nicotianae])

HSP 1 Score: 158.7 bits (400), Expect = 1.200e-35
Identity = 72/110 (65.45%), Postives = 88/110 (80.00%), Query Frame = 0 
Query:    4 SVVPALKARVMAVEFVKNNPRIKAMLDHPAGPFTIHFWAPSFKWGISLANIADFNRPAEFISVPQQLAVTATGIIWSRYSFVITPVNYNLFSVNAFMAVTGSYQLWRKFT 114
            S+VP ++ +V+  + V N+P++ AML HPAGPFT+HFWAP+FKWGISLAN+AD  R  E ISV QQ AVTATG+IWSRYS VITP N+NLF+VN FMA TG  Q +RKFT
Sbjct:    4 SIVPRIQQKVLEQQIVANSPKLTAMLSHPAGPFTVHFWAPTFKWGISLANVADMKRSPETISVAQQTAVTATGLIWSRYSLVITPKNWNLFAVNVFMAGTGLVQFYRKFT 113
[Close]
BLAST of NO10G01850 vs. NCBI_GenBank
Match: XP_009530215.1 (hypothetical protein PHYSODRAFT_361107 [Phytophthora sojae] >EGZ12786.1 hypothetical protein PHYSODRAFT_361107 [Phytophthora sojae])

HSP 1 Score: 156.0 bits (393), Expect = 8.000e-35
Identity = 70/110 (63.64%), Postives = 88/110 (80.00%), Query Frame = 0 
Query:    4 SVVPALKARVMAVEFVKNNPRIKAMLDHPAGPFTIHFWAPSFKWGISLANIADFNRPAEFISVPQQLAVTATGIIWSRYSFVITPVNYNLFSVNAFMAVTGSYQLWRKFT 114
            S+VP ++ +VM  + V N+P++ A+L+HPAGPFT+HFWAP+FKW IS+AN+AD  R  E ISV QQ AVTATG+IWSRYS VITP N+NLF+VN FMA TG  Q +RKFT
Sbjct:  194 SIVPRIQQKVMEQQIVANSPKLMALLNHPAGPFTVHFWAPTFKWAISIANVADMKRSPETISVAQQTAVTATGLIWSRYSLVITPKNWNLFAVNVFMAGTGLVQFYRKFT 303
[Close]
BLAST of NO10G01850 vs. NCBI_GenBank
Match: XP_008611213.1 (hypothetical protein SDRG_07171 [Saprolegnia diclina VS20] >EQC35463.1 hypothetical protein SDRG_07171 [Saprolegnia diclina VS20])

HSP 1 Score: 154.5 bits (389), Expect = 2.300e-34
Identity = 70/108 (64.81%), Postives = 86/108 (79.63%), Query Frame = 0 
Query:    4 SVVPALKARVMAVEFVKNNPRIKAMLDHPAGPFTIHFWAPSFKWGISLANIADFNRPAEFISVPQQLAVTATGIIWSRYSFVITPVNYNLFSVNAFMAVTGSYQLWRK 112
            SVVP LK  V+A +F+  NP++ + L+HPAGPFTIHFWAP+FKW ISLAN+AD  +  + +S PQQ+AVT TG+IWSRYS VITP N+NLFSVN FMA TG  QL+RK
Sbjct:    6 SVVPRLKQAVLAQDFIAKNPKVVSFLEHPAGPFTIHFWAPAFKWCISLANVADMKKNPDLLSTPQQVAVTLTGVIWSRYSLVITPKNWNLFSVNLFMAGTGLTQLYRK 113
[Close]
BLAST of NO10G01850 vs. NCBI_GenBank
Match: XP_012200372.1 (hypothetical protein SPRG_05693 [Saprolegnia parasitica CBS 223.65] >KDO28732.1 hypothetical protein SPRG_05693 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 154.5 bits (389), Expect = 2.300e-34
Identity = 71/108 (65.74%), Postives = 85/108 (78.70%), Query Frame = 0 
Query:    4 SVVPALKARVMAVEFVKNNPRIKAMLDHPAGPFTIHFWAPSFKWGISLANIADFNRPAEFISVPQQLAVTATGIIWSRYSFVITPVNYNLFSVNAFMAVTGSYQLWRK 112
            SVVP LK  V+A +FV  NP++ + L+HPAGPFTIHFWAP+FKW ISLAN+AD  +  + +S PQQ AVT TG+IWSRYS VITP N+NLFSVN FMA TG  QL+RK
Sbjct:    6 SVVPRLKQAVLAQDFVAKNPKVVSFLEHPAGPFTIHFWAPAFKWCISLANVADMKKNPDLLSTPQQFAVTLTGVIWSRYSLVITPKNWNLFSVNLFMAGTGLTQLYRK 113
[Close]
BLAST of NO10G01850 vs. NCBI_GenBank
Match: OQR82411.1 (hypothetical protein ACHHYP_16082 [Achlya hypogyna])

HSP 1 Score: 153.7 bits (387), Expect = 4.000e-34
Identity = 69/108 (63.89%), Postives = 85/108 (78.70%), Query Frame = 0 
Query:    4 SVVPALKARVMAVEFVKNNPRIKAMLDHPAGPFTIHFWAPSFKWGISLANIADFNRPAEFISVPQQLAVTATGIIWSRYSFVITPVNYNLFSVNAFMAVTGSYQLWRK 112
            SVVP +K  V+A +F+  NP++ + L+HPAGPFTIHFWAP+FKW ISLAN+AD  +  + +S PQQ AVT TG+IWSRYS VITP N+NLFSVN FMA TG  QL+RK
Sbjct:    6 SVVPRIKQVVLAQDFIAKNPKVVSFLEHPAGPFTIHFWAPAFKWAISLANVADMKKNPDLLSTPQQFAVTLTGVIWSRYSLVITPKNWNLFSVNLFMAGTGLTQLYRK 113
[Close]
BLAST of NO10G01850 vs. NCBI_GenBank
Match: XP_024580720.1 (mitochondrial pyruvate carrier 2-like [Plasmopara halstedii] >CEG44351.1 mitochondrial pyruvate carrier 2-like [Plasmopara halstedii])

HSP 1 Score: 152.5 bits (384), Expect = 8.800e-34
Identity = 68/110 (61.82%), Postives = 87/110 (79.09%), Query Frame = 0 
Query:    4 SVVPALKARVMAVEFVKNNPRIKAMLDHPAGPFTIHFWAPSFKWGISLANIADFNRPAEFISVPQQLAVTATGIIWSRYSFVITPVNYNLFSVNAFMAVTGSYQLWRKFT 114
            S+VP ++ +++  + V N+P++ ++L HPAGPFT+HFWAP+FKW IS+ANIAD  R  E ISV QQ AVTATG+IWSRYS VITP N+NLF+VN FMA TG  Q +RKFT
Sbjct:  300 SIVPRIQQKILEHQIVTNSPKLTSILSHPAGPFTVHFWAPTFKWAISIANIADMRRSPEHISVAQQAAVTATGLIWSRYSLVITPKNWNLFAVNVFMAGTGLTQFYRKFT 409
[Close]
BLAST of NO10G01850 vs. NCBI_GenBank
Match: OWZ08904.1 (hypothetical protein PHMEG_00018483 [Phytophthora megakarya])

HSP 1 Score: 152.1 bits (383), Expect = 1.200e-33
Identity = 72/126 (57.14%), Postives = 91/126 (72.22%), Query Frame = 0 
Query:    4 SVVPALKARVMAVEFVKNNPRIKAMLDHPAGPFTIHFWAPSFKWGISLANIADFNRPAEFISVPQQLAVTATGIIWSRYSFVITPVNYNLFSVNAFMAVTGSYQLWRKFTTQATPTAPPNSASVSS 130
            S+VP ++ +V+  + V N+P++ AML HPAGPFT+HFWAP+ KW ISLAN+AD  R  E ISV QQ AVTATG+IWSRYS +ITP N+NLF+VN FMA TG  Q +RKFT   +       A+ SS
Sbjct:    4 SIVPRIQQKVLEHQIVANSPKLTAMLGHPAGPFTVHFWAPTIKWAISLANLADMRRSPETISVAQQTAVTATGLIWSRYSLIITPKNWNLFAVNVFMAGTGLVQFYRKFTYDPSQKTEAIEAAKSS 129
The following BLAST results are available for this feature:
BLAST of NO10G01850 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25375.17.000e-5585.27Uncharacterized protein family UPF0041 [Nannochlor... [more]
CCA17801.11.000e-3767.26CSH putative [Albugo laibachii Nc14][more]
CCI42368.11.900e-3669.44unnamed protein product [Albugo candida][more]
XP_008899459.11.200e-3565.45hypothetical protein PPTG_07053 [Phytophthora para... [more]
XP_009530215.18.000e-3563.64hypothetical protein PHYSODRAFT_361107 [Phytophtho... [more]
XP_008611213.12.300e-3464.81hypothetical protein SDRG_07171 [Saprolegnia dicli... [more]
XP_012200372.12.300e-3465.74hypothetical protein SPRG_05693 [Saprolegnia paras... [more]
OQR82411.14.000e-3463.89hypothetical protein ACHHYP_16082 [Achlya hypogyna... [more]
XP_024580720.18.800e-3461.82mitochondrial pyruvate carrier 2-like [Plasmopara ... [more]
OWZ08904.11.200e-3357.14hypothetical protein PHMEG_00018483 [Phytophthora ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL054nonsL054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR012ngnoR012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G01850.1NO10G01850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586199gene_4028Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100005g49gene5081Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G01850.1NO10G01850.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G01850 ID=NO10G01850|Name=NO10G01850|organism=Nannochloropsis oceanica|type=gene|length=939bp
ATGGGACTCAGCGTTGTTCCAGCACTCAAGGCTCGAGTGATGGCCGTGGA
ATTTGTGAAAAACAACCCGCGGATCAAGGCGATGCTAGACCACCCCGCTG
GACCGTTTACGAgtaagtgctgtgctaagggttagggttagggtcagagc
gcttaacctgcatttatgccggttcgggtgtccgctcttaccctttatct
ttccttacataacaatgtctgctcgctgattacatgcttgccccgccctg
ctcccatatgcccgtgtgttcctctataatatttgctctgcaccctccat
catattggctctgcaacctccacgtcagggcgtcatcgtattggtaaatg
actgcatatgtcacatttttcaaaagttccatacatcctgcatcgctaca
catgttgccacgaattggaaaaatccgacaaaaaaccttactcgttgtct
tctcatctgttcatcccatatgtcaactcgcccatccatgttcagTTCAT
TTCTGGGCGCCGTCGTTCAAATGGGGCATTTCCTTGGCAAACATCGCCGA
CTTCAACCGGCCAGCTGAATTCATCTCCGTGCCGCAGCAACTTGgtaagt
acaatcaagcacgtgacgctttacctccttctctcccctgcctctctgtt
cctctttcgctgcttcacaaagcgcaatagtgttcgaccgtgtttttaag
atggcatacgcaacctttaaagcatgcgattgacgcttcttccacccatt
taaaccacagCGGTGACTGCCACGGGCATTATCTGGTCACGGTACAGCTT
CGTCATCACCCCTGTCAACTACAACCTCTTCAGTGTCAATGCCTTTATGG
CCGTCACGGGCAGCTACCAGCTTTGGCGTAAATTTACCACCCAAGCTACG
CCCACTGCGCCTCCCAACTCGGCCTCGGTCTCGTCTTGA
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protein sequence of NO10G01850.1

>NO10G01850.1-protein ID=NO10G01850.1-protein|Name=NO10G01850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=130bp
MGLSVVPALKARVMAVEFVKNNPRIKAMLDHPAGPFTIHFWAPSFKWGIS
LANIADFNRPAEFISVPQQLAVTATGIIWSRYSFVITPVNYNLFSVNAFM
AVTGSYQLWRKFTTQATPTAPPNSASVSS*
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Synonyms
Publications