NO10G01850.1, NO10G01850.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01850.1
Unique NameNO10G01850.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length390
Alignment locationchr10:519646..520584 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:519646..520584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G01850.1 vs.
Match: EWM25375.1 (Uncharacterized protein family UPF0041 [Nannochloropsis gaditana])

HSP 1 Score: 222.6 bits (566), Expect = 7.000e-55
Identity = 110/129 (85.27%), Postives = 116/129 (89.92%), Query Frame = 0 
Query:    1 MGLSVVPALKARVMAVEFVKNNPRIKAMLDHPAGPFTIHFWAPSFKWGISLANIADFNRPAEFISVPQQLAVTATGIIWSRYSFVITPVNYNLFSVNAFMAVTGSYQLWRKFTTQATPTAPPNSASVSS 130
            M L VV ALKAR++AV F+KNNPR+KA+LDHPAGPFTIHFWAPSFKWGISLANIADFNRPAE ISVPQQLAVTATGIIWSRYSFVITPVNYNLFSVNAFMAVTGSYQLWRKF      TA PNS SV+S
Sbjct:   30 MALGVVTALKARLLAVGFIKNNPRVKAVLDHPAGPFTIHFWAPSFKWGISLANIADFNRPAELISVPQQLAVTATGIIWSRYSFVITPVNYNLFSVNAFMAVTGSYQLWRKF------TATPNSMSVAS 152
The following BLAST results are available for this feature:
BLAST of NO10G01850.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25375.17.000e-5585.27Uncharacterized protein family UPF0041 [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01850NO10G01850Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01850.1NO10G01850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01850.1.cds1NO10G01850.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01850.1.cds2NO10G01850.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01850.1.cds3NO10G01850.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01850.1 ID=NO10G01850.1|Name=NO10G01850.1|organism=Nannochloropsis oceanica|type=mRNA|length=390bp
ATGGGACTCAGCGTTGTTCCAGCACTCAAGGCTCGAGTGATGGCCGTGGA
ATTTGTGAAAAACAACCCGCGGATCAAGGCGATGCTAGACCACCCCGCTG
GACCGTTTACGATTCATTTCTGGGCGCCGTCGTTCAAATGGGGCATTTCC
TTGGCAAACATCGCCGACTTCAACCGGCCAGCTGAATTCATCTCCGTGCC
GCAGCAACTTGCGGTGACTGCCACGGGCATTATCTGGTCACGGTACAGCT
TCGTCATCACCCCTGTCAACTACAACCTCTTCAGTGTCAATGCCTTTATG
GCCGTCACGGGCAGCTACCAGCTTTGGCGTAAATTTACCACCCAAGCTAC
GCCCACTGCGCCTCCCAACTCGGCCTCGGTCTCGTCTTGA
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protein sequence of NO10G01850.1

>NO10G01850.1-protein ID=NO10G01850.1-protein|Name=NO10G01850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=130bp
MGLSVVPALKARVMAVEFVKNNPRIKAMLDHPAGPFTIHFWAPSFKWGIS
LANIADFNRPAEFISVPQQLAVTATGIIWSRYSFVITPVNYNLFSVNAFM
AVTGSYQLWRKFTTQATPTAPPNSASVSS*
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mRNA from alignment at chr10:519646..520584+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01850.1 ID=NO10G01850.1|Name=NO10G01850.1|organism=Nannochloropsis oceanica|type=mRNA|length=939bp|location=Sequence derived from alignment at chr10:519646..520584+ (Nannochloropsis oceanica)
ATGGGACTCAGCGTTGTTCCAGCACTCAAGGCTCGAGTGATGGCCGTGGA
ATTTGTGAAAAACAACCCGCGGATCAAGGCGATGCTAGACCACCCCGCTG
GACCGTTTACGAGTAAGTGCTGTGCTAAGGGTTAGGGTTAGGGTCAGAGC
GCTTAACCTGCATTTATGCCGGTTCGGGTGTCCGCTCTTACCCTTTATCT
TTCCTTACATAACAATGTCTGCTCGCTGATTACATGCTTGCCCCGCCCTG
CTCCCATATGCCCGTGTGTTCCTCTATAATATTTGCTCTGCACCCTCCAT
CATATTGGCTCTGCAACCTCCACGTCAGGGCGTCATCGTATTGGTAAATG
ACTGCATATGTCACATTTTTCAAAAGTTCCATACATCCTGCATCGCTACA
CATGTTGCCACGAATTGGAAAAATCCGACAAAAAACCTTACTCGTTGTCT
TCTCATCTGTTCATCCCATATGTCAACTCGCCCATCCATGTTCAGTTCAT
TTCTGGGCGCCGTCGTTCAAATGGGGCATTTCCTTGGCAAACATCGCCGA
CTTCAACCGGCCAGCTGAATTCATCTCCGTGCCGCAGCAACTTGGTAAGT
ACAATCAAGCACGTGACGCTTTACCTCCTTCTCTCCCCTGCCTCTCTGTT
CCTCTTTCGCTGCTTCACAAAGCGCAATAGTGTTCGACCGTGTTTTTAAG
ATGGCATACGCAACCTTTAAAGCATGCGATTGACGCTTCTTCCACCCATT
TAAACCACAGCGGTGACTGCCACGGGCATTATCTGGTCACGGTACAGCTT
CGTCATCACCCCTGTCAACTACAACCTCTTCAGTGTCAATGCCTTTATGG
CCGTCACGGGCAGCTACCAGCTTTGGCGTAAATTTACCACCCAAGCTACG
CCCACTGCGCCTCCCAACTCGGCCTCGGTCTCGTCTTGA
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Coding sequence (CDS) from alignment at chr10:519646..520584+

>NO10G01850.1 ID=NO10G01850.1|Name=NO10G01850.1|organism=Nannochloropsis oceanica|type=CDS|length=390bp|location=Sequence derived from alignment at chr10:519646..520584+ (Nannochloropsis oceanica)
ATGGGACTCAGCGTTGTTCCAGCACTCAAGGCTCGAGTGATGGCCGTGGA
ATTTGTGAAAAACAACCCGCGGATCAAGGCGATGCTAGACCACCCCGCTG
GACCGTTTACGATTCATTTCTGGGCGCCGTCGTTCAAATGGGGCATTTCC
TTGGCAAACATCGCCGACTTCAACCGGCCAGCTGAATTCATCTCCGTGCC
GCAGCAACTTGCGGTGACTGCCACGGGCATTATCTGGTCACGGTACAGCT
TCGTCATCACCCCTGTCAACTACAACCTCTTCAGTGTCAATGCCTTTATG
GCCGTCACGGGCAGCTACCAGCTTTGGCGTAAATTTACCACCCAAGCTAC
GCCCACTGCGCCTCCCAACTCGGCCTCGGTCTCGTCTTGA
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Synonyms
Publications