NO10G01770, NO10G01770 (gene) Nannochloropsis oceanica

Overview
NameNO10G01770
Unique NameNO10G01770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1554
Alignment locationchr10:492445..493998 +

Link to JBrowse

Properties
Property NameValue
DescriptionCathepsin z
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:492445..493998 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO:0019538protein metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008234cysteine-type peptidase activity
GO:0016787hydrolase activity
Vocabulary: INTERPRO
TermDefinition
IPR038765Papain_like_cys_pep_sf
IPR013128Peptidase_C1A
IPR033157Cathepsin_X
IPR000668Peptidase_C1A_C
Homology
BLAST of NO10G01770 vs. NCBI_GenBank
Match: EWM25400.1 (cathepsin z [Nannochloropsis gaditana])

HSP 1 Score: 504.2 bits (1297), Expect = 3.000e-139
Identity = 225/280 (80.36%), Postives = 255/280 (91.07%), Query Frame = 0
Query:   19 IVYRSGELALRDPASYQNEVIRAARPHTYLSANDLPSEWDWRSVDGLSYTTPIQNQHIPVYCGSCWSFSAMSSLGDRLAIASKGQLPDVMPAPQVVINCGTAGDCNGGDSGAAYAWIHEVGGIPDVSCQAYEAKNRPCTLENTCRNCAPEFRKLRKGRTCYAVDKYPKIFVEEYGNVTGDAAIIAEIYARGPVVCYIDAGPLEDYTGGVNMYEGAHGTNHAIALVGWGETTDGIKFYIGRNSWGSYWGEKGWFRIVRGGAFDAGTCFWAVPSSDFSIDYG 299
            ++YR GELALRDPASY+NE++ + RP++YL A++LP+ WDWR+VDGLSYTTPIQNQHIPVYCGSCWSFSAMSS+GDRL IAS GQ PD++PAPQV+INCGTAGDCNGGDSGAAYAWI+E GGIPD SCQAYEA+NR CT ENTCRNC   F +LRKG+TC+AV +YPKI+VEE+GNVTGDA I+AEI+ARGPVVCYIDAGPLE YTGGVNMYEGA  TNHAIALVGWGET DG+K+Y+GRNSWG+YWGE GWFRIVRGG FDAGTCFWAVPSSDFS DYG
Sbjct:   31 VIYRYGELALRDPASYRNEIVISPRPYSYLLADELPASWDWRNVDGLSYTTPIQNQHIPVYCGSCWSFSAMSSIGDRLNIASNGQHPDILPAPQVLINCGTAGDCNGGDSGAAYAWIYEAGGIPDTSCQAYEAQNRACTAENTCRNCNATFSRLRKGQTCFAVTEYPKIYVEEHGNVTGDAQIMAEIFARGPVVCYIDAGPLEGYTGGVNMYEGAGRTNHAIALVGWGETEDGLKYYVGRNSWGTYWGENGWFRIVRGGLFDAGTCFWAVPSSDFS-DYG 309          
BLAST of NO10G01770 vs. NCBI_GenBank
Match: CEO99142.1 (hypothetical protein PBRA_001047 [Plasmodiophora brassicae])

HSP 1 Score: 268.5 bits (685), Expect = 2.700e-68
Identity = 137/281 (48.75%), Postives = 186/281 (66.19%), Query Frame = 0
Query:    2 MMKLLLLATTALVGADHIVYRSGELALRDPASYQNEVIRAARPHTYLSANDLPSEWDWRSVDGLSYTTPIQNQHIPVYCGSCWSFSAMSSLGDRLAIASKGQLPDVMPAPQVVINCGT--AGDCNGGDSGAAYAWIHEVGGIPDVSCQAYEAKNRPCTLENTCRNCAPEFRKLRKGRTCYAVDK--YPKIFVEEYGNVTGDAAIIAEIYARGPVVCYIDAGPLEDYTGGVNM-YEGAHGTNHAIALVGWG-ETTDGIKFYIGRNSWGSYWGEKGWFRIVRG 277
            ++ +LLL T AL       Y+S EL  + P      V+R+A PH Y+S  DLP  WDWR+V G++Y T   NQHIP YCGSCW+  A+S+L DR+ I  + + PD+  + QVV+NCGT  AG C+GGD+G AY ++HE  G+P+ +CQ Y+A +  CT  N CRNC+P+         C+ VDK  YP+ FV+EYG+V G+  ++AEIYARGP+ C +DA PLEDY GG+ +  E  +  NH IA+ GWG +     K++I RNSWG+YWGE GWFR+VRG
Sbjct:    7 VLLVLLLLTVAL------AYKS-ELR-QMPGRRVPSVVRSALPHEYISPGDLPETWDWRNVSGVNYVTKDLNQHIPQYCGSCWAHGALSALADRIKIRRQARFPDINLSVQVVLNCGTHIAGSCDGGDAGGAYEYVHE-NGVPEETCQQYKAIDDECTPMNQCRNCSPD------PNVCFPVDKDEYPQWFVDEYGSVDGEHRMMAEIYARGPIPCQVDATPLEDYKGGILVASEEFNEPNHIIAVSGWGVDPITKQKYWIVRNSWGTYWGEHGWFRVVRG 272          
BLAST of NO10G01770 vs. NCBI_GenBank
Match: XP_019861728.1 (PREDICTED: cathepsin Z-like [Amphimedon queenslandica])

HSP 1 Score: 257.3 bits (656), Expect = 6.300e-65
Identity = 122/255 (47.84%), Postives = 166/255 (65.10%), Query Frame = 0
Query:   44 PHTYLSANDLPSEWDWRSVDGLSYTTPIQNQHIPVYCGSCWSFSAMSSLGDRLAIASKGQLPDVMPAPQVVINCGTAGD---CNGGDSGAAYAWIHEVGGIPDVSCQAYEAKNRPCTLENTCRNCAPEFRKLRKGRTCYAVDKYPKIFVEEYGNVTGDAAIIAEIYARGPVVCYID-AGPLEDYTGGV-NMYEGAHGTNHAIALVGWGETTDGIKFYIGRNSWGSYWGEKGWFRIVRG--GAFDAGTCFWAVPSS 292
            PHTYL+  DLPS++ W   DG +Y TP +NQHIP YCGSCW+    S+L DR+ +  KG  P +  +PQV+++C TA +   C+GGD  AAY++I+E  G+PD +C  Y AK + C  EN CRNC P  +       C+AV KY K  V E+G V+G+  +++EIYARGP+ C I      E YTGGV N   GA   +H I++ GWG T++G+K++IGRNSWG+YWGE GWFR++RG         C WAVP++
Sbjct:   42 PHTYLNVADLPSQFSWEDKDGQNYLTPPRNQHIPQYCGSCWAMGTTSALSDRIKLMRKGAYPVINLSPQVLVDCVTANNSHGCDGGDPTAAYSYIYE-NGVPDETCTNYLAKTQSCEPENVCRNCDPSGK-------CFAVQKYTKYQVTEHGRVSGEDKMLSEIYARGPIACTIAVTSAFEQYTGGVFNDTTGAKSLDHEISIAGWGVTSEGVKYWIGRNSWGTYWGEAGWFRLIRGVDNLGVESNCDWAVPAA 288          
BLAST of NO10G01770 vs. NCBI_GenBank
Match: XP_024376810.1 (cathepsin Z-like [Physcomitrella patens] >XP_024376811.1 cathepsin Z-like [Physcomitrella patens] >PNR54037.1 hypothetical protein PHYPA_007713 [Physcomitrella patens])

HSP 1 Score: 253.1 bits (645), Expect = 1.200e-63
Identity = 118/255 (46.27%), Postives = 163/255 (63.92%), Query Frame = 0
Query:   39 IRAARPHTYLSANDLPSEWDWRSVDGLSYTTPIQNQHIPVYCGSCWSFSAMSSLGDRLAIASKGQLPDVMPAPQVVINCGT--AGDCNGGDSGAAYAWIHEVGGIPDVSCQAYEAKNRPCTLENTCRNCAPEFRKLRKGRTCYAVDKYPKIFVEEYGNVTGDAAIIAEIYARGPVVCYIDAGPLEDYTGGVNMYEGAHGTNHAIALVGWGETTDGIKFYIGRNSWGSYWGEKGWFRIVRG--GAFDAGTCFWAVP 290
            + + +PH YL  +DLP  WDWR+V+G SY T   NQHIPVYCGSCW+ +A+SSL DR  +  K Q PD+  + QV++NC T  AG C+GGD    + ++HE  G+P+ +CQ Y A++  CT  N CRNC P    +    +C A+  YP  FV EYG V+G+  ++AEIY RGP+ C ID+  L  YTGG+ +       +H +++ GWGE  +G+K++I RNSWG+YWGE GWFR++RG         C W VP
Sbjct:   85 VLSKQPHEYLKLSDLPKAWDWRNVNGTSYATRDLNQHIPVYCGSCWAHAALSSLADRHKMLRKAQWPDIQYSVQVILNCATDIAGSCHGGDPLGVFKFMHE-HGLPEETCQLYRARDDECTPINVCRNCVPPVGNI---ESCTAISDYPIHFVGEYGKVSGELNMMAEIYERGPIACSIDSTLLHSYTGGILVNTDPAHHDHVVSVSGWGE-ENGLKYWIIRNSWGTYWGESGWFRLIRGVDSLNIEENCAWGVP 334          
BLAST of NO10G01770 vs. NCBI_GenBank
Match: PTQ31979.1 (hypothetical protein MARPO_0104s0015 [Marchantia polymorpha])

HSP 1 Score: 246.5 bits (628), Expect = 1.100e-61
Identity = 121/260 (46.54%), Postives = 166/260 (63.85%), Query Frame = 0
Query:   33 SYQNEVIRAARPHTYLSANDLPSEWDWRSVDGLSYTTPIQNQHIPVYCGSCWSFSAMSSLGDRLAIASKGQLPDVMPAPQVVINCG-TAGDCNGGDSGAAYAWIHEVGGIPDVSCQAYEAKNRPCTLENTCRNCAPEFRKLRKGRTCYAVDKYPKIFVEEYGNVTGDAAIIAEIYARGPVVCYIDAGPLEDYTGGVNMYEGAHGTNHAIALVGWGETTDGIKFYIGRNSWGSYWGEKGWFRIVRG-GAFD-AGTCFWAVP 290
            S   E++ + RPH YL    LP  +DWR+V+G SY T   NQHIPVYCGSCW+ +A+SSL DR  I  + Q PD+  + QVV+NC   AG C+GG+    + +IHE  GIP+ +CQ Y+A +  CTL N CR+C P    +     C  V  Y K +V EYG+V G+  ++AEIY RGP+ C ++A  L  Y GG+ +   +  T+H +++ GWG   +G+K++I RNSWG+YWGEKGWFR+VRG  + D    C WAVP
Sbjct:   77 SNSKELVFSKRPHEYLDMTSLPEYFDWRNVNGTSYVTKDLNQHIPVYCGSCWAHAALSSLADRHKILRRAQWPDIHYSIQVVLNCAPNAGTCHGGNHLETFKYIHE-NGIPEETCQLYKAVDEECTLLNICRDCTP---PVGNADYCKPVLGYTKHWVSEYGHVEGELNMMAEIYERGPIACSLNASVLHSYRGGIVIEPESTDTDHVVSVSGWG-VENGVKYWIVRNSWGTYWGEKGWFRVVRGVNSLDIEKKCSWAVP 331          
BLAST of NO10G01770 vs. NCBI_GenBank
Match: XP_014529616.1 (peptidase C1A domain-containing protein [Blastocystis sp. subtype 4] >KNB46173.1 peptidase C1A domain-containing protein [Blastocystis sp. subtype 4])

HSP 1 Score: 246.1 bits (627), Expect = 1.500e-61
Identity = 125/262 (47.71%), Postives = 163/262 (62.21%), Query Frame = 0
Query:   35 QNEVIRAARPHTYLSANDLPSEWDWRSVDGLSYTTPIQNQHIPVYCGSCWSFSAMSSLGDRLAIASKGQLPDVMPAPQVVINCGTAGDCNGGDSGAAYAWIHEVGGIPDVSCQAYEAKNRPCTLENTCRNCAPEFRKLRKGRTCYAVDKYPKIFVEEYGNVTGDAAIIAEIYARGPVVCYIDA-GPLEDYTGGVNMYEGAHG-TNHAIALVGWGETTDGIKFYIGRNSWGSYWGEKGWFRI-VRGGAFDAGTCFWAVPSSDF 294
            + EVI++  PHTYLSA ++P  +D R+V+G++Y T  +NQHIPV+CGSCW+  + ++L DR+ I  KG  P V  A QVV+NCG AG C GG     Y + HE  GIPD +CQ YEA +  CT ENTCRNC       R G  C+AV  Y    V EYG V+G+  I AEI+ARGPV C +       DY GG+ + + +     H + + GWGET +G K++IGRNSWG YWGE GWFRI +   +    +C W VP  DF
Sbjct:  285 KKEVIKSPLPHTYLSAEEIPKNYDIRNVNGVNYATWNRNQHIPVWCGSCWAQGSTAALSDRINIMRKGAWPAVNLAVQVVLNCGNAGSCGGGFDSGVYEFAHET-GIPDQTCQPYEAVDHECTPENTCRNCD------RDG--CWAVKDYKAYKVSEYGRVSGEEKIKAEIFARGPVSCTMTVRQSFVDYHGGIYVEDQSPVLAGHIVEIAGWGETEEGQKYWIGRNSWGEYWGELGWFRIDMEKNSGIGSSCGWGVPIIDF 537          
BLAST of NO10G01770 vs. NCBI_GenBank
Match: XP_002507788.1 (cysteine endopeptidase [Micromonas commoda] >ACO69046.1 cysteine endopeptidase [Micromonas commoda])

HSP 1 Score: 242.7 bits (618), Expect = 1.600e-60
Identity = 132/302 (43.71%), Postives = 176/302 (58.28%), Query Frame = 0
Query:   29 RDPASYQNEVIRAARPHTYLSANDLPSEWDWRSVDGLSYTTPIQNQHIPVYCGSCWSFSAMSSLGDRLAIA----SKGQLPDVMPAPQVVINCGT--AGDCNGGDSGAAYAWIHEVGGIPDVSCQAYEA---------------KNRPCTLENTCRNCAPEFRKLRKGRTCYAVDKYPKIFVEEYGNVTGDAAIIAEIYARGPVVCYIDAGPLEDYTGGV--NMYEGAHGTNHAIALVGWGETTDGIKFYIGRNSWGSYWGEKGWFRIVRG----GAFDAGTCFWAVPSSDFSIDYGVGREG 304
            R P   + E + +ARPH Y+ A  LP  + W  V+G++Y T + NQH+P YCGSCW+  AMSSL DR+ IA    +KG  PDV  A Q ++NCGT  AG C+GG +  AY ++ E G +P  +C  YEA                   C  ENTCR C+  F  +  G  C A+D +P   + EYG V+G+  I+AE+YARGPV   IDA  L++YTGG+     +  +  NH +A+VGWGET  G K++I RNSWG YWGE G+FRIVRG    G  D   C WA P+S  + + G   +G
Sbjct:   64 RMPGHDKREHVVSARPHEYIDATKLPKSFTWSDVEGVNYLTKMLNQHVPQYCGSCWAHGAMSSLADRIKIAKGPHAKG--PDVNLAIQFILNCGTEVAGSCHGGSATGAYQFVKEAGFVPFETCLVYEACSAESSEGSCAAGDVSRYECKPENTCRTCS-TFSDM--GGFCSALDSFPNASIAEYGEVSGEKEIMAEVYARGPVAAGIDANLLDEYTGGILDQPADYEYEINHIVAIVGWGETKKGEKYWIVRNSWGEYWGEMGFFRIVRGKKALGIED--ECSWATPASWTTHNQGCYEDG 358          
BLAST of NO10G01770 vs. NCBI_GenBank
Match: OAO13425.1 (cysteine protease 1, partial [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 241.1 bits (614), Expect = 4.700e-60
Identity = 124/269 (46.10%), Postives = 169/269 (62.83%), Query Frame = 0
Query:   27 ALRDPASYQNEVIRAARPHTYLSANDLPSEWDWRSVDGLSYTTPIQNQHIPVYCGSCWSFSAMSSLGDRLAIASKGQLPDVMPAPQVVINCG-TAGDCNGGDSGAAYAWIHEVGGIPDVSCQAYEAKNRPCTLENTCRNCAPEFRKLRKGRTCYAVDKYPKIFVEEYGNVTGDAAIIAEIYARGPVVCYIDAGP--LEDYTGGV-NMYEGAHGTNHAIALVGWGETTDGIKFYIGRNSWGSYWGEKGWFRIVRG--GAFDAGTCFWAVP 290
            A+R+  +    VI+  +P+TYL+A  LP  +D R++DG +Y T  +NQHIP YCGSCW+F+A S++ DRL + +KG  P    +PQ+++NC  TA  C+GG   +AY  +HE G + D  C  Y A +  CT  N CR+C  ++        C+AV  Y K FVEEYG+V+G+  ++ EIYARGP+ C IDA      +Y GG+     GA   NHAI++VGWGE  DG K++I RNSWGSYWGEKG+ R+VRG         C WAVP
Sbjct:  241 AVRNDWNKVKPVIKTPQPYTYLNAAKLPESYDIRNIDGHNYATWNKNQHIPQYCGSCWAFAAASAVSDRLRLMTKGAWPTAELSPQMIVNCATTANGCHGGGMSSAYKLMHERGAV-DEGCMRYTADDNECTDINICRDCGHDY-------PCHAVKNYTKYFVEEYGSVSGEERMMKEIYARGPITCAIDATDDFYYNYRGGIYRDTSGAQSLNHAISVVGWGE-EDGQKYWIMRNSWGSYWGEKGFARVVRGENNLGIESECTWAVP 500          
BLAST of NO10G01770 vs. NCBI_GenBank
Match: XP_012895722.1 (uncharacterized protein [Blastocystis hominis] >CBK21674.2 unnamed protein product [Blastocystis hominis])

HSP 1 Score: 237.7 bits (605), Expect = 5.200e-59
Identity = 119/261 (45.59%), Postives = 153/261 (58.62%), Query Frame = 0
Query:   38 VIRAARPHTYLSANDLPSEWDWRSVDGLSYTTPIQNQHIPVYCGSCWSFSAMSSLGDRLAIASKGQLPDVMPAPQVVINCGTAGDCNGGDSGAAYAWIHEVGGIPDVSCQAYEAKNRPCTLENTCRNCAPEFRKLRKGRTCYAVDKYPKIFVEEYGNVTGDAAIIAEIYARGPVVCYIDAG-PLEDYTGGVNMYEGAHGT--NHAIALVGWGETTDGIKFYIGRNSWGSYWGEKGWFRIV--RGGAFDAGTCFWAVPSSDF 294
            V+    PH YL + D+P  +D R++DG +Y T  +NQHIP YCGSCW+  + S++ DR+ I  KG+ P V  + Q VINCG  G CNGG     Y + HE  GIPD +CQ YEA+N+ C   N C +C P+       R CYAV  Y +  V +YG V+G   + AEI+ARGP+ CY+       DYTGGV   E  H     H I + GWG T DG +++IGRNSWG YWGE GWFRI   +       +C W VP  DF
Sbjct:  310 VVTEPLPHFYLKSEDIPKSYDIRNIDGRNYATWDKNQHIPQYCGSCWAQGSTSAIADRINIMRKGKWPTVELSVQEVINCGNTGSCNGGWDSGVYRYAHE-EGIPDQTCQVYEARNKECNDMNRCMDCPPD-------RDCYAVKDYKRYKVGDYGYVSGKDKMKAEIFARGPISCYVSVSQEFLDYTGGV-FVEHDHSMLGGHIIEVAGWGVTEDGQEYWIGRNSWGEYWGENGWFRIQTDKDNLEIESSCTWGVPIIDF 561          
BLAST of NO10G01770 vs. NCBI_GenBank
Match: XP_014527894.1 (peptidase C1A family protein [Blastocystis sp. subtype 4] >KNB44454.1 peptidase C1A family protein [Blastocystis sp. subtype 4])

HSP 1 Score: 236.9 bits (603), Expect = 8.900e-59
Identity = 114/265 (43.02%), Postives = 166/265 (62.64%), Query Frame = 0
Query:   30 DPASYQNEVIRAARPHTYLSANDLPSEWDWRSVDGLSYTTPIQNQHIPVYCGSCWSFSAMSSLGDRLAIASKGQLPDVMPAPQVVINCGTAGD-CNGGDSGAAYAWIHEVGGIPDVSCQAYEAKNRPCTLENTCRNCAPEFRKLRKGRTCYAVDKYPKIFVEEYGNVTGDAAIIAEIYARGPVVCYID-AGPLEDYTGGV-NMYEGAHGTNHAIALVGWGETTDGIKFYIGRNSWGSYWGEKGWFRIVRG--GAFDAGTCFWAVP 290
            +P +   ++++   P  YL A++LP  +D R+++G SY T  +NQHIP YCGSCW+F++ SS+ DR+ + +KG  P+   APQV++NC    D C GG    A+ ++H+  G+P+  CQ Y AKN  CT  N CR+C  ++        C+AV  Y K +V+EYG+V G+  ++AEIYARGP+ C I     L +Y GGV     G    +H+I++ GWGE  DG K++I RNSWG++WGE+GWFR++RG         C WAVP
Sbjct:   20 NPKARVPDLVKTPVPSQYLKASELPKSYDPRNLNGKSYVTVTKNQHIPQYCGSCWAFASASSVSDRIRLMTKGAWPERDLAPQVILNCDAFSDGCQGGHPLTAFKYMHD-NGLPEEGCQRYVAKNEECTDINICRDCGHDY-------PCHAVQNYTKYYVDEYGSVQGEKNMMAEIYARGPITCTIAIPDDLLEYKGGVYRDTTGLKTLDHSISVAGWGEEEDGTKYWIARNSWGTFWGEQGWFRVIRGEDNLGIESDCQWAVP 276          
The following BLAST results are available for this feature:
BLAST of NO10G01770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25400.13.000e-13980.36cathepsin z [Nannochloropsis gaditana][more]
CEO99142.12.700e-6848.75hypothetical protein PBRA_001047 [Plasmodiophora b... [more]
XP_019861728.16.300e-6547.84PREDICTED: cathepsin Z-like [Amphimedon queensland... [more]
XP_024376810.11.200e-6346.27cathepsin Z-like [Physcomitrella patens] >XP_02437... [more]
PTQ31979.11.100e-6146.54hypothetical protein MARPO_0104s0015 [Marchantia p... [more]
XP_014529616.11.500e-6147.71peptidase C1A domain-containing protein [Blastocys... [more]
XP_002507788.11.600e-6043.71cysteine endopeptidase [Micromonas commoda] >ACO69... [more]
OAO13425.14.700e-6046.10cysteine protease 1, partial [Blastocystis sp. ATC... [more]
XP_012895722.15.200e-5945.59uncharacterized protein [Blastocystis hominis] >CB... [more]
XP_014527894.18.900e-5943.02peptidase C1A family protein [Blastocystis sp. sub... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G01770.1NO10G01770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586254gene_4037Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G01770.1NO10G01770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G01770 ID=NO10G01770|Name=NO10G01770|organism=Nannochloropsis oceanica|type=gene|length=1554bp
CAGGCCCAAAGTTTTATCTTCTCCCCTCCTGACGCACACGAGCGACTCGA
ACACGATGATGATGAAGTTGCTGCTCCTAGCCACCACAGCTCTAGTTGGC
GCGGATCATATTGTGTACCGGTCTGGGGAGTTGGCGCTGCGAGACCCTGC
GTCGTACCAGAACGAAGTAATTCGGGCGGCCCGACCTCATACTTACCTGT
CGGCTAATGACCTGCCTTCGGAGTGGGATTGGCGCTCAGTCGATGGGCTC
TCTTACACCACGCCGATCCAGAACCAACATATCCCGgtacgcataaaagg
gatgacagatgcattgcatgtatggcctggcgacagaagcgtgtgacgac
tctgtaaagccccgacgctaacgatggttgtcatccgtccaatttacttt
tcgcaccacattcaaatatgtatagaaccgcgttttttcgatgtcgtttt
aacttttccacttattccatttcctccattttgcttgacacagGTGTACT
GTGGTTCGTGCTGGTCTTTCAGCGCCATGTCCTCGCTAGGGGATCGGCTT
GCTATTGCATCCAAAGGACAGCTGCCAGACGTGATGCCCGCACCACAAGT
TGTTATCAATTGTGGGACAGCCGGGGACTGTAACGGTGGAGACAGCGGGG
CAGCTTACGCGTGGATACATGAAGTGGGAGGCATCCCTGATGTGAGCTGC
CAGGCTTACGAGGCGAAGAATCGGCCATGCACGTTGGAAAATACCTGCAG
AAATTGTGCACCCGAGTTTAGGAAATTGCGGAAGGGACGCACATGTTATG
CGGTTGACAAGTACCCTAAAATTTTCGTGGAGGAATATGGAAATGTCACG
GGGGACGCGGCAATTATAGCAGAAATTTACGCGAGGGGGCCGGTGGTCTG
CTATATCGATGCGGGGCCACTTGAGGATTATACTGGGGGGGTTAACATGT
ATGAAGGCGCCCACGGTACGAATCACGCGATTGCACTGGTGGGGTGGGGG
GAGACGACAGATGGTATCAAATTTTACATCGGGAGGAATAGCTGGGGGAG
CTACTGGGGTGAGAAGGGCTGGTTTCGCATTGTACGAGGAGGAGCTTTTG
ACGCCGGTACGTGTTTCTGGGCAGTACCGTCATCCGACTTCAGCATTGAT
TATGGGGTGGGCAGGGAAGGTGGAAAAACAGAAGGAGAAAATAATTGGAC
GGATGGAAACTTGTTCTCCATGGTGCAGTAAGTATCTTGGCGTCTTTTTT
GTCGTCATTTGAATGGAAACGGCTTCGTCAGAGCAGCGCGAGGCCAGATG
GGAGAAGCGAAGCGCAGAGTTAGATATACTTACCAATGGTGACAGTCAAG
CGAATAGCAAAACGAACAAGACGAAATATGTATTCAGTTGTCCTTCTGTT
GTTGCACAGAGAGTTAGAGAAAAGAGTGTAGGGCTACGCGTCCATTTTCT
ACCAAGTATACAAAGATTGGGGGTAAATGCAGGCACACGTGCATGTAGAA
ACTGGTGTCGGCGCCGCCTTTCCAAATAAATATTCACAGAAGAGTCTTTC
CGTA
back to top

protein sequence of NO10G01770.1

>NO10G01770.1-protein ID=NO10G01770.1-protein|Name=NO10G01770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=323bp
MMMKLLLLATTALVGADHIVYRSGELALRDPASYQNEVIRAARPHTYLSA
NDLPSEWDWRSVDGLSYTTPIQNQHIPVYCGSCWSFSAMSSLGDRLAIAS
KGQLPDVMPAPQVVINCGTAGDCNGGDSGAAYAWIHEVGGIPDVSCQAYE
AKNRPCTLENTCRNCAPEFRKLRKGRTCYAVDKYPKIFVEEYGNVTGDAA
IIAEIYARGPVVCYIDAGPLEDYTGGVNMYEGAHGTNHAIALVGWGETTD
GIKFYIGRNSWGSYWGEKGWFRIVRGGAFDAGTCFWAVPSSDFSIDYGVG
REGGKTEGENNWTDGNLFSMVQ*
back to top
Synonyms
Publications