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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr10 | genome | chr10:492445..493998 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G01770.1 vs.
Match: EWM25400.1 (cathepsin z [Nannochloropsis gaditana]) HSP 1 Score: 504.2 bits (1297), Expect = 3.000e-139 Identity = 225/280 (80.36%), Postives = 255/280 (91.07%), Query Frame = 0
Query: 19 IVYRSGELALRDPASYQNEVIRAARPHTYLSANDLPSEWDWRSVDGLSYTTPIQNQHIPVYCGSCWSFSAMSSLGDRLAIASKGQLPDVMPAPQVVINCGTAGDCNGGDSGAAYAWIHEVGGIPDVSCQAYEAKNRPCTLENTCRNCAPEFRKLRKGRTCYAVDKYPKIFVEEYGNVTGDAAIIAEIYARGPVVCYIDAGPLEDYTGGVNMYEGAHGTNHAIALVGWGETTDGIKFYIGRNSWGSYWGEKGWFRIVRGGAFDAGTCFWAVPSSDFSIDYG 299
++YR GELALRDPASY+NE++ + RP++YL A++LP+ WDWR+VDGLSYTTPIQNQHIPVYCGSCWSFSAMSS+GDRL IAS GQ PD++PAPQV+INCGTAGDCNGGDSGAAYAWI+E GGIPD SCQAYEA+NR CT ENTCRNC F +LRKG+TC+AV +YPKI+VEE+GNVTGDA I+AEI+ARGPVVCYIDAGPLE YTGGVNMYEGA TNHAIALVGWGET DG+K+Y+GRNSWG+YWGE GWFRIVRGG FDAGTCFWAVPSSDFS DYG
Sbjct: 31 VIYRYGELALRDPASYRNEIVISPRPYSYLLADELPASWDWRNVDGLSYTTPIQNQHIPVYCGSCWSFSAMSSIGDRLNIASNGQHPDILPAPQVLINCGTAGDCNGGDSGAAYAWIYEAGGIPDTSCQAYEAQNRACTAENTCRNCNATFSRLRKGQTCFAVTEYPKIYVEEHGNVTGDAQIMAEIFARGPVVCYIDAGPLEGYTGGVNMYEGAGRTNHAIALVGWGETEDGLKYYVGRNSWGTYWGENGWFRIVRGGLFDAGTCFWAVPSSDFS-DYG 309
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G01770.1 ID=NO10G01770.1|Name=NO10G01770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1347bp CAGGCCCAAAGTTTTATCTTCTCCCCTCCTGACGCACACGAGCGACTCGA ACACGATGATGATGAAGTTGCTGCTCCTAGCCACCACAGCTCTAGTTGGC GCGGATCATATTGTGTACCGGTCTGGGGAGTTGGCGCTGCGAGACCCTGC GTCGTACCAGAACGAAGTAATTCGGGCGGCCCGACCTCATACTTACCTGT CGGCTAATGACCTGCCTTCGGAGTGGGATTGGCGCTCAGTCGATGGGCTC TCTTACACCACGCCGATCCAGAACCAACATATCCCGGTGTACTGTGGTTC GTGCTGGTCTTTCAGCGCCATGTCCTCGCTAGGGGATCGGCTTGCTATTG CATCCAAAGGACAGCTGCCAGACGTGATGCCCGCACCACAAGTTGTTATC AATTGTGGGACAGCCGGGGACTGTAACGGTGGAGACAGCGGGGCAGCTTA CGCGTGGATACATGAAGTGGGAGGCATCCCTGATGTGAGCTGCCAGGCTT ACGAGGCGAAGAATCGGCCATGCACGTTGGAAAATACCTGCAGAAATTGT GCACCCGAGTTTAGGAAATTGCGGAAGGGACGCACATGTTATGCGGTTGA CAAGTACCCTAAAATTTTCGTGGAGGAATATGGAAATGTCACGGGGGACG CGGCAATTATAGCAGAAATTTACGCGAGGGGGCCGGTGGTCTGCTATATC GATGCGGGGCCACTTGAGGATTATACTGGGGGGGTTAACATGTATGAAGG CGCCCACGGTACGAATCACGCGATTGCACTGGTGGGGTGGGGGGAGACGA CAGATGGTATCAAATTTTACATCGGGAGGAATAGCTGGGGGAGCTACTGG GGTGAGAAGGGCTGGTTTCGCATTGTACGAGGAGGAGCTTTTGACGCCGG TACGTGTTTCTGGGCAGTACCGTCATCCGACTTCAGCATTGATTATGGGG TGGGCAGGGAAGGTGGAAAAACAGAAGGAGAAAATAATTGGACGGATGGA AACTTGTTCTCCATGGTGCAGTAAGTATCTTGGCGTCTTTTTTGTCGTCA TTTGAATGGAAACGGCTTCGTCAGAGCAGCGCGAGGCCAGATGGGAGAAG CGAAGCGCAGAGTTAGATATACTTACCAATGGTGACAGTCAAGCGAATAG CAAAACGAACAAGACGAAATATGTATTCAGTTGTCCTTCTGTTGTTGCAC AGAGAGTTAGAGAAAAGAGTGTAGGGCTACGCGTCCATTTTCTACCAAGT ATACAAAGATTGGGGGTAAATGCAGGCACACGTGCATGTAGAAACTGGTG TCGGCGCCGCCTTTCCAAATAAATATTCACAGAAGAGTCTTTCCGTA back to topprotein sequence of NO10G01770.1 >NO10G01770.1-protein ID=NO10G01770.1-protein|Name=NO10G01770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=323bp MMMKLLLLATTALVGADHIVYRSGELALRDPASYQNEVIRAARPHTYLSA NDLPSEWDWRSVDGLSYTTPIQNQHIPVYCGSCWSFSAMSSLGDRLAIAS KGQLPDVMPAPQVVINCGTAGDCNGGDSGAAYAWIHEVGGIPDVSCQAYE AKNRPCTLENTCRNCAPEFRKLRKGRTCYAVDKYPKIFVEEYGNVTGDAA IIAEIYARGPVVCYIDAGPLEDYTGGVNMYEGAHGTNHAIALVGWGETTD GIKFYIGRNSWGSYWGEKGWFRIVRGGAFDAGTCFWAVPSSDFSIDYGVG REGGKTEGENNWTDGNLFSMVQ* back to topmRNA from alignment at chr10:492445..493998+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G01770.1 ID=NO10G01770.1|Name=NO10G01770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1554bp|location=Sequence derived from alignment at chr10:492445..493998+ (Nannochloropsis oceanica) CAGGCCCAAAGTTTTATCTTCTCCCCTCCTGACGCACACGAGCGACTCGA
ACACGATGATGATGAAGTTGCTGCTCCTAGCCACCACAGCTCTAGTTGGC
GCGGATCATATTGTGTACCGGTCTGGGGAGTTGGCGCTGCGAGACCCTGC
GTCGTACCAGAACGAAGTAATTCGGGCGGCCCGACCTCATACTTACCTGT
CGGCTAATGACCTGCCTTCGGAGTGGGATTGGCGCTCAGTCGATGGGCTC
TCTTACACCACGCCGATCCAGAACCAACATATCCCGGTACGCATAAAAGG
GATGACAGATGCATTGCATGTATGGCCTGGCGACAGAAGCGTGTGACGAC
TCTGTAAAGCCCCGACGCTAACGATGGTTGTCATCCGTCCAATTTACTTT
TCGCACCACATTCAAATATGTATAGAACCGCGTTTTTTCGATGTCGTTTT
AACTTTTCCACTTATTCCATTTCCTCCATTTTGCTTGACACAGGTGTACT
GTGGTTCGTGCTGGTCTTTCAGCGCCATGTCCTCGCTAGGGGATCGGCTT
GCTATTGCATCCAAAGGACAGCTGCCAGACGTGATGCCCGCACCACAAGT
TGTTATCAATTGTGGGACAGCCGGGGACTGTAACGGTGGAGACAGCGGGG
CAGCTTACGCGTGGATACATGAAGTGGGAGGCATCCCTGATGTGAGCTGC
CAGGCTTACGAGGCGAAGAATCGGCCATGCACGTTGGAAAATACCTGCAG
AAATTGTGCACCCGAGTTTAGGAAATTGCGGAAGGGACGCACATGTTATG
CGGTTGACAAGTACCCTAAAATTTTCGTGGAGGAATATGGAAATGTCACG
GGGGACGCGGCAATTATAGCAGAAATTTACGCGAGGGGGCCGGTGGTCTG
CTATATCGATGCGGGGCCACTTGAGGATTATACTGGGGGGGTTAACATGT
ATGAAGGCGCCCACGGTACGAATCACGCGATTGCACTGGTGGGGTGGGGG
GAGACGACAGATGGTATCAAATTTTACATCGGGAGGAATAGCTGGGGGAG
CTACTGGGGTGAGAAGGGCTGGTTTCGCATTGTACGAGGAGGAGCTTTTG
ACGCCGGTACGTGTTTCTGGGCAGTACCGTCATCCGACTTCAGCATTGAT
TATGGGGTGGGCAGGGAAGGTGGAAAAACAGAAGGAGAAAATAATTGGAC
GGATGGAAACTTGTTCTCCATGGTGCAGTAAGTATCTTGGCGTCTTTTTT
GTCGTCATTTGAATGGAAACGGCTTCGTCAGAGCAGCGCGAGGCCAGATG
GGAGAAGCGAAGCGCAGAGTTAGATATACTTACCAATGGTGACAGTCAAG
CGAATAGCAAAACGAACAAGACGAAATATGTATTCAGTTGTCCTTCTGTT
GTTGCACAGAGAGTTAGAGAAAAGAGTGTAGGGCTACGCGTCCATTTTCT
ACCAAGTATACAAAGATTGGGGGTAAATGCAGGCACACGTGCATGTAGAA
ACTGGTGTCGGCGCCGCCTTTCCAAATAAATATTCACAGAAGAGTCTTTC
CGTA back to topCoding sequence (CDS) from alignment at chr10:492445..493998+ >NO10G01770.1 ID=NO10G01770.1|Name=NO10G01770.1|organism=Nannochloropsis oceanica|type=CDS|length=969bp|location=Sequence derived from alignment at chr10:492445..493998+ (Nannochloropsis oceanica) ATGATGATGAAGTTGCTGCTCCTAGCCACCACAGCTCTAGTTGGCGCGGA TCATATTGTGTACCGGTCTGGGGAGTTGGCGCTGCGAGACCCTGCGTCGT ACCAGAACGAAGTAATTCGGGCGGCCCGACCTCATACTTACCTGTCGGCT AATGACCTGCCTTCGGAGTGGGATTGGCGCTCAGTCGATGGGCTCTCTTA CACCACGCCGATCCAGAACCAACATATCCCGGTGTACTGTGGTTCGTGCT GGTCTTTCAGCGCCATGTCCTCGCTAGGGGATCGGCTTGCTATTGCATCC AAAGGACAGCTGCCAGACGTGATGCCCGCACCACAAGTTGTTATCAATTG TGGGACAGCCGGGGACTGTAACGGTGGAGACAGCGGGGCAGCTTACGCGT GGATACATGAAGTGGGAGGCATCCCTGATGTGAGCTGCCAGGCTTACGAG GCGAAGAATCGGCCATGCACGTTGGAAAATACCTGCAGAAATTGTGCACC CGAGTTTAGGAAATTGCGGAAGGGACGCACATGTTATGCGGTTGACAAGT ACCCTAAAATTTTCGTGGAGGAATATGGAAATGTCACGGGGGACGCGGCA ATTATAGCAGAAATTTACGCGAGGGGGCCGGTGGTCTGCTATATCGATGC GGGGCCACTTGAGGATTATACTGGGGGGGTTAACATGTATGAAGGCGCCC ACGGTACGAATCACGCGATTGCACTGGTGGGGTGGGGGGAGACGACAGAT GGTATCAAATTTTACATCGGGAGGAATAGCTGGGGGAGCTACTGGGGTGA GAAGGGCTGGTTTCGCATTGTACGAGGAGGAGCTTTTGACGCCGGTACGT GTTTCTGGGCAGTACCGTCATCCGACTTCAGCATTGATTATGGGGTGGGC AGGGAAGGTGGAAAAACAGAAGGAGAAAATAATTGGACGGATGGAAACTT GTTCTCCATGGTGCAGTAA back to top
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