NO10G01770.1, NO10G01770.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01770.1
Unique NameNO10G01770.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1347
Alignment locationchr10:492445..493998 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:492445..493998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO10G01770.1 vs.
Match: EWM25400.1 (cathepsin z [Nannochloropsis gaditana])

HSP 1 Score: 504.2 bits (1297), Expect = 3.000e-139
Identity = 225/280 (80.36%), Postives = 255/280 (91.07%), Query Frame = 0
Query:   19 IVYRSGELALRDPASYQNEVIRAARPHTYLSANDLPSEWDWRSVDGLSYTTPIQNQHIPVYCGSCWSFSAMSSLGDRLAIASKGQLPDVMPAPQVVINCGTAGDCNGGDSGAAYAWIHEVGGIPDVSCQAYEAKNRPCTLENTCRNCAPEFRKLRKGRTCYAVDKYPKIFVEEYGNVTGDAAIIAEIYARGPVVCYIDAGPLEDYTGGVNMYEGAHGTNHAIALVGWGETTDGIKFYIGRNSWGSYWGEKGWFRIVRGGAFDAGTCFWAVPSSDFSIDYG 299
            ++YR GELALRDPASY+NE++ + RP++YL A++LP+ WDWR+VDGLSYTTPIQNQHIPVYCGSCWSFSAMSS+GDRL IAS GQ PD++PAPQV+INCGTAGDCNGGDSGAAYAWI+E GGIPD SCQAYEA+NR CT ENTCRNC   F +LRKG+TC+AV +YPKI+VEE+GNVTGDA I+AEI+ARGPVVCYIDAGPLE YTGGVNMYEGA  TNHAIALVGWGET DG+K+Y+GRNSWG+YWGE GWFRIVRGG FDAGTCFWAVPSSDFS DYG
Sbjct:   31 VIYRYGELALRDPASYRNEIVISPRPYSYLLADELPASWDWRNVDGLSYTTPIQNQHIPVYCGSCWSFSAMSSIGDRLNIASNGQHPDILPAPQVLINCGTAGDCNGGDSGAAYAWIYEAGGIPDTSCQAYEAQNRACTAENTCRNCNATFSRLRKGQTCFAVTEYPKIYVEEHGNVTGDAQIMAEIFARGPVVCYIDAGPLEGYTGGVNMYEGAGRTNHAIALVGWGETEDGLKYYVGRNSWGTYWGENGWFRIVRGGLFDAGTCFWAVPSSDFS-DYG 309          
The following BLAST results are available for this feature:
BLAST of NO10G01770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25400.13.000e-13980.36cathepsin z [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01770NO10G01770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01770.1NO10G01770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01770.1.cds1NO10G01770.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01770.1.cds2NO10G01770.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01770.1 ID=NO10G01770.1|Name=NO10G01770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1347bp
CAGGCCCAAAGTTTTATCTTCTCCCCTCCTGACGCACACGAGCGACTCGA
ACACGATGATGATGAAGTTGCTGCTCCTAGCCACCACAGCTCTAGTTGGC
GCGGATCATATTGTGTACCGGTCTGGGGAGTTGGCGCTGCGAGACCCTGC
GTCGTACCAGAACGAAGTAATTCGGGCGGCCCGACCTCATACTTACCTGT
CGGCTAATGACCTGCCTTCGGAGTGGGATTGGCGCTCAGTCGATGGGCTC
TCTTACACCACGCCGATCCAGAACCAACATATCCCGGTGTACTGTGGTTC
GTGCTGGTCTTTCAGCGCCATGTCCTCGCTAGGGGATCGGCTTGCTATTG
CATCCAAAGGACAGCTGCCAGACGTGATGCCCGCACCACAAGTTGTTATC
AATTGTGGGACAGCCGGGGACTGTAACGGTGGAGACAGCGGGGCAGCTTA
CGCGTGGATACATGAAGTGGGAGGCATCCCTGATGTGAGCTGCCAGGCTT
ACGAGGCGAAGAATCGGCCATGCACGTTGGAAAATACCTGCAGAAATTGT
GCACCCGAGTTTAGGAAATTGCGGAAGGGACGCACATGTTATGCGGTTGA
CAAGTACCCTAAAATTTTCGTGGAGGAATATGGAAATGTCACGGGGGACG
CGGCAATTATAGCAGAAATTTACGCGAGGGGGCCGGTGGTCTGCTATATC
GATGCGGGGCCACTTGAGGATTATACTGGGGGGGTTAACATGTATGAAGG
CGCCCACGGTACGAATCACGCGATTGCACTGGTGGGGTGGGGGGAGACGA
CAGATGGTATCAAATTTTACATCGGGAGGAATAGCTGGGGGAGCTACTGG
GGTGAGAAGGGCTGGTTTCGCATTGTACGAGGAGGAGCTTTTGACGCCGG
TACGTGTTTCTGGGCAGTACCGTCATCCGACTTCAGCATTGATTATGGGG
TGGGCAGGGAAGGTGGAAAAACAGAAGGAGAAAATAATTGGACGGATGGA
AACTTGTTCTCCATGGTGCAGTAAGTATCTTGGCGTCTTTTTTGTCGTCA
TTTGAATGGAAACGGCTTCGTCAGAGCAGCGCGAGGCCAGATGGGAGAAG
CGAAGCGCAGAGTTAGATATACTTACCAATGGTGACAGTCAAGCGAATAG
CAAAACGAACAAGACGAAATATGTATTCAGTTGTCCTTCTGTTGTTGCAC
AGAGAGTTAGAGAAAAGAGTGTAGGGCTACGCGTCCATTTTCTACCAAGT
ATACAAAGATTGGGGGTAAATGCAGGCACACGTGCATGTAGAAACTGGTG
TCGGCGCCGCCTTTCCAAATAAATATTCACAGAAGAGTCTTTCCGTA
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protein sequence of NO10G01770.1

>NO10G01770.1-protein ID=NO10G01770.1-protein|Name=NO10G01770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=323bp
MMMKLLLLATTALVGADHIVYRSGELALRDPASYQNEVIRAARPHTYLSA
NDLPSEWDWRSVDGLSYTTPIQNQHIPVYCGSCWSFSAMSSLGDRLAIAS
KGQLPDVMPAPQVVINCGTAGDCNGGDSGAAYAWIHEVGGIPDVSCQAYE
AKNRPCTLENTCRNCAPEFRKLRKGRTCYAVDKYPKIFVEEYGNVTGDAA
IIAEIYARGPVVCYIDAGPLEDYTGGVNMYEGAHGTNHAIALVGWGETTD
GIKFYIGRNSWGSYWGEKGWFRIVRGGAFDAGTCFWAVPSSDFSIDYGVG
REGGKTEGENNWTDGNLFSMVQ*
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mRNA from alignment at chr10:492445..493998+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01770.1 ID=NO10G01770.1|Name=NO10G01770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1554bp|location=Sequence derived from alignment at chr10:492445..493998+ (Nannochloropsis oceanica)
CAGGCCCAAAGTTTTATCTTCTCCCCTCCTGACGCACACGAGCGACTCGA ACACGATGATGATGAAGTTGCTGCTCCTAGCCACCACAGCTCTAGTTGGC GCGGATCATATTGTGTACCGGTCTGGGGAGTTGGCGCTGCGAGACCCTGC GTCGTACCAGAACGAAGTAATTCGGGCGGCCCGACCTCATACTTACCTGT CGGCTAATGACCTGCCTTCGGAGTGGGATTGGCGCTCAGTCGATGGGCTC TCTTACACCACGCCGATCCAGAACCAACATATCCCGGTACGCATAAAAGG GATGACAGATGCATTGCATGTATGGCCTGGCGACAGAAGCGTGTGACGAC TCTGTAAAGCCCCGACGCTAACGATGGTTGTCATCCGTCCAATTTACTTT TCGCACCACATTCAAATATGTATAGAACCGCGTTTTTTCGATGTCGTTTT AACTTTTCCACTTATTCCATTTCCTCCATTTTGCTTGACACAGGTGTACT GTGGTTCGTGCTGGTCTTTCAGCGCCATGTCCTCGCTAGGGGATCGGCTT GCTATTGCATCCAAAGGACAGCTGCCAGACGTGATGCCCGCACCACAAGT TGTTATCAATTGTGGGACAGCCGGGGACTGTAACGGTGGAGACAGCGGGG CAGCTTACGCGTGGATACATGAAGTGGGAGGCATCCCTGATGTGAGCTGC CAGGCTTACGAGGCGAAGAATCGGCCATGCACGTTGGAAAATACCTGCAG AAATTGTGCACCCGAGTTTAGGAAATTGCGGAAGGGACGCACATGTTATG CGGTTGACAAGTACCCTAAAATTTTCGTGGAGGAATATGGAAATGTCACG GGGGACGCGGCAATTATAGCAGAAATTTACGCGAGGGGGCCGGTGGTCTG CTATATCGATGCGGGGCCACTTGAGGATTATACTGGGGGGGTTAACATGT ATGAAGGCGCCCACGGTACGAATCACGCGATTGCACTGGTGGGGTGGGGG GAGACGACAGATGGTATCAAATTTTACATCGGGAGGAATAGCTGGGGGAG CTACTGGGGTGAGAAGGGCTGGTTTCGCATTGTACGAGGAGGAGCTTTTG ACGCCGGTACGTGTTTCTGGGCAGTACCGTCATCCGACTTCAGCATTGAT TATGGGGTGGGCAGGGAAGGTGGAAAAACAGAAGGAGAAAATAATTGGAC GGATGGAAACTTGTTCTCCATGGTGCAGTAAGTATCTTGGCGTCTTTTTT GTCGTCATTTGAATGGAAACGGCTTCGTCAGAGCAGCGCGAGGCCAGATG GGAGAAGCGAAGCGCAGAGTTAGATATACTTACCAATGGTGACAGTCAAG CGAATAGCAAAACGAACAAGACGAAATATGTATTCAGTTGTCCTTCTGTT GTTGCACAGAGAGTTAGAGAAAAGAGTGTAGGGCTACGCGTCCATTTTCT ACCAAGTATACAAAGATTGGGGGTAAATGCAGGCACACGTGCATGTAGAA ACTGGTGTCGGCGCCGCCTTTCCAAATAAATATTCACAGAAGAGTCTTTC CGTA
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Coding sequence (CDS) from alignment at chr10:492445..493998+

>NO10G01770.1 ID=NO10G01770.1|Name=NO10G01770.1|organism=Nannochloropsis oceanica|type=CDS|length=969bp|location=Sequence derived from alignment at chr10:492445..493998+ (Nannochloropsis oceanica)
ATGATGATGAAGTTGCTGCTCCTAGCCACCACAGCTCTAGTTGGCGCGGA
TCATATTGTGTACCGGTCTGGGGAGTTGGCGCTGCGAGACCCTGCGTCGT
ACCAGAACGAAGTAATTCGGGCGGCCCGACCTCATACTTACCTGTCGGCT
AATGACCTGCCTTCGGAGTGGGATTGGCGCTCAGTCGATGGGCTCTCTTA
CACCACGCCGATCCAGAACCAACATATCCCGGTGTACTGTGGTTCGTGCT
GGTCTTTCAGCGCCATGTCCTCGCTAGGGGATCGGCTTGCTATTGCATCC
AAAGGACAGCTGCCAGACGTGATGCCCGCACCACAAGTTGTTATCAATTG
TGGGACAGCCGGGGACTGTAACGGTGGAGACAGCGGGGCAGCTTACGCGT
GGATACATGAAGTGGGAGGCATCCCTGATGTGAGCTGCCAGGCTTACGAG
GCGAAGAATCGGCCATGCACGTTGGAAAATACCTGCAGAAATTGTGCACC
CGAGTTTAGGAAATTGCGGAAGGGACGCACATGTTATGCGGTTGACAAGT
ACCCTAAAATTTTCGTGGAGGAATATGGAAATGTCACGGGGGACGCGGCA
ATTATAGCAGAAATTTACGCGAGGGGGCCGGTGGTCTGCTATATCGATGC
GGGGCCACTTGAGGATTATACTGGGGGGGTTAACATGTATGAAGGCGCCC
ACGGTACGAATCACGCGATTGCACTGGTGGGGTGGGGGGAGACGACAGAT
GGTATCAAATTTTACATCGGGAGGAATAGCTGGGGGAGCTACTGGGGTGA
GAAGGGCTGGTTTCGCATTGTACGAGGAGGAGCTTTTGACGCCGGTACGT
GTTTCTGGGCAGTACCGTCATCCGACTTCAGCATTGATTATGGGGTGGGC
AGGGAAGGTGGAAAAACAGAAGGAGAAAATAATTGGACGGATGGAAACTT
GTTCTCCATGGTGCAGTAA
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Synonyms
Publications