NO10G01200, NO10G01200 (gene) Nannochloropsis oceanica

Overview
NameNO10G01200
Unique NameNO10G01200
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2820
Alignment locationchr10:356137..358956 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:356137..358956 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008709Neurochondrin
Homology
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BLAST of NO10G01200 vs. NCBI_GenBank
Match: EWM25458.1 (hypothetical protein Naga_100005g131 [Nannochloropsis gaditana])

HSP 1 Score: 313.5 bits (802), Expect = 2.200e-81
Identity = 189/469 (40.30%), Postives = 265/469 (56.50%), Query Frame = 0 
Query:  484 MAAEELESLANVGEEVMEKDLSLKDRLGRVKEMIPLCVDGLDSVLRFLCGAGDGPECLRLQQQADEEYHNHQQERTKTWVMLPGEKLLEIRASLHDAIGALLKLLHDGAREWKQQQQQRQNCSAGEEAKKGEL--EMEGVYREVARFLSAVLAEDEACMTGEEALSVLPFVMYLAGETEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXTAEEEAEEGIAVLFRLVDECQIHLWFAKHLLRPLLPISEKGEKQHIDLLLLFHDILFKGGDSVLSDDHACLLAHHPQVLSLVRHLVLGN---SSLFSPYPSFSNIRVRLYQVWFVLSLLWGRADSNSSSRSSSGRAVGGRKGQVEKGEGF-AQEVLQRVLPVGSKEYWAWMEGVGGVLIEGMKLV--------QQGAPTKMEEEDRQELEGLWGQSVDLLSIASEDVRRNVLQASAFKYGKREVEMLEGELMLVGAASAVL 939
            MAAEEL+SL ++ E+++  D +L+ R  R   ++PLCV+GL++VLRFLCGAG+GPEC+ ++          +      W MLPGE LL++RASLHDA+GA L+LL DGA EW+   Q R   + G +    EL  E+E V+REV  F+SA+L+EDE C++ EE L VLPF   + GE                                 +++AE  I  + RLVDECQIH WF K L RP    SE+G  QH+DLL +FH+I+ +GG  V+ DD ACLL  HP + SLV  LVL N   SS    + S S++R+ L++VWFVLS+LW RA   S S         G++G  E  E    Q +L  ++P GS+   +W+ G+G VL+EG K +              K+ E +R E+   W QS+ + S     V++ VLQ     Y   +++ LE E +L+ AA+AVL
Sbjct:    1 MAAEELQSLGHLEEDILGSDFALQRRRERALRILPLCVEGLEAVLRFLCGAGNGPECV-IEGNESSARSESRARCDGEWWMLPGENLLDMRASLHDALGAFLRLLQDGAGEWR---QTRVRTAGGPDRVWEELGEELEAVFREVVAFMSAMLSEDEGCLSAEETLDVLPFFKAVVGE-------------DPRWMRPWVSRAMLLGIENGDDDAEASIRAIDRLVDECQIHHWFVKQLKRPTRDASEQG--QHVDLLFIFHEIIVRGGQRVICDDVACLLLFHPSISSLVPDLVLDNYHPSSSCLAFTSSSSVRLGLHRVWFVLSILWERAQFRSGSE--------GKRGIAEDVEYLELQGLLDGLVPPGSETRLSWLTGIGRVLVEGGKALISAPRCHAHAAEGPKLTEAERDEISDAWKQSMRIFSYLPRSVQQEVLQRLRLYYNAEDLQALEDEWVLLDAAAAVL 442
The following BLAST results are available for this feature:
BLAST of NO10G01200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25458.12.200e-8140.30hypothetical protein Naga_100005g131 [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL053nonsL053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR017ngnoR017Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000990NSK000990Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G01200.1NO10G01200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586535gene_4097Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100005g131gene5153Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G01200.1NO10G01200.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G01200 ID=NO10G01200|Name=NO10G01200|organism=Nannochloropsis oceanica|type=gene|length=2820bp
ATGCCCCGGGCAACACCGCCGGCTCGACCACAACCAGCAACTGGAGACGT
CATAGGGAATGCCCTCCAGCTCATGCATGGTAGCCAGGATGAGGCTAAAT
TTGCCGGGCTTCTCCTGCTCGTGAAGCATCTCAGCACTACCACCACCTCC
CCAACCAACGCCACTTCAGACAACAATGACATCCGTCAACTCGTCTTGGA
GGCAGTGACCCCGCAATTTCTGGCGCGTTTGCTTGCCTCACGTGCTTCCT
CTCCCAACAGTCAGCATTTTCGAGGAGTGGCTCTTGCCGTATTATCGACG
CTGGTCCAAGATCCTACCCTTGTTCCTCGTCTCCGGCCGTTGCTCAAGCA
TGTGTTGAGCGCACTTGACGATATTTCAGCGCTATCTCAAGCCTCTCAGG
GGCTAGTGATTGGATATGAAGAAGCTCGGATGAATGTGGTGGAGGATTGT
CTGTTTTTCTTGTATGCCTTGACGCAGCATGATCGAACGGTAGCATGTGT
GCGGGAGTTTGACACTCTGGAGGTATTCAGGCGCGTGACCGCTTGTATGT
TGGAGTTGCGAAACATGCGTATAACAATCAGCAACAGCATCAGCAGCCAT
AGTAGTAGTAGTAGTAGTAGTGGTAGTAGTAGTAGTAGTGGTAGTGGTAG
TAGAAGTAGTAATTGTAGGAGTAGGAGGATGGGTAAAATTGAGGAAAACG
AAGTGACGGAAGCAGCAGAAGCAGTGGCAGCAATGAAGACAGTGGATGAA
GAGGGGAAAGGCGGCACTTCAGATGCCAGTCCTGCATCCCCCCCTAGAAG
CAGCACCGATACACAAAACACCACTATTACGACCGACAACATTCCTTCAG
CTACTGTTGCTGCTGGAACCATCGACCACCCTACCCGTCTCCTTACAGAA
GCTTGCGCCACGTTACACGAGGTTCTACTCATGGGACATGAGCTCCAATG
TCCTCAGCGCTTGAAACCTGATGATAGAGATACCCTTGTCACGCTTTCCT
TTATACTAGAAGAAGAAGGAGGGGACGTCAAGCTTAGAATCCTCCACCTC
CTCAACTTCCTCTTTTCCCACGTACGCAGTTCTCACCAAGCAGCAGCGGG
AGCAGCAGCAGGGTCAGCAAGAGATGGTAGTGGAGGAGAAAGATACATGA
CAAATACCAGCGTACACATGTTGGGCAGGCATATGCGTGGCGCTCTGCTG
CAGCTGCTGCACGGCGCCTTGAGGGAAAGGAATCGCGACCCGGCCTTGAG
ACTCCTCGTGCACACGCTCGCTATATTTGGGCAAACCTGGGCGATTGAAG
ACGAGGACGAGGAAGGTAGGGAAGAAGGAAAGGAGAAAGCGGTTCTTTCC
ATCAACCCTAGGGCTGAGGGGGAGAGAAAAGGAGTAACAGGCATGTCGCG
TGGGACTTGTGTTGGGTTTTTTGTGCATGTCCTTTCGGCGGAAACCAGGA
TGGCGGCGGAGGAATTAGAGAGTCTTGCCAATGTTGGAGAGGAAGTGATG
GAGAAGGATTTGTCGTTGAAAGATCGGCTGGGACGAGTAAAGGAAATGAT
ACCCTTGTGTGTGGATGGCCTAGACTCGGTGTTAAGATTTTTGTGTGGTG
CCGGTGATGGACCTGAATGCCTGCGGCTGCAGCAGCAGGCGGATGAGGAG
TATCATAACCATCAGCAAGAAAGGACGAAGACATGGGTAATGCTGCCGGG
GGAAAAGTTGCTGGAAATTCGCGCATCTTTACATGATGCTATAGGGGCAC
TACTGAAACTCCTGCATGATGGAGCGAGGGAGTGGAAGCAGCAGCAGCAG
CAGCGACAGAATTGTTCGGCGGGAGAGGAAGCGAAGAAGGGGGAGTTAGA
GATGGAGGGGGTGTACCGTGAGGTCGCTCGGTTTCTGAGTGCGGTCCTGG
CAGAGGATGAAGCATGCATGACTGGAGAGGAAGCATTGAGTGTCCTGCCA
TTTGTCATGTATCTAGCCGGTGAGACCGAAGGAGGGGGAGGAGGGTACGA
AGGAGGGCGCGAAGGAGGAAGGGTTGGATGGGTGCTACCGTGGGTGTCAC
GCGTGCTGTCGCCCGGGACAGCGGAGGAAGAGGCAGAGGAGGGGATAGCG
GTCTTGTTCCGGTTGGTCGACGAATGCCAGATTCATCTGTGGTTTGCGAA
GCATTTATTGCGGCCTTTGTTGCCAATTTCAGAGAAAGGGGAAAAGCAGC
ATATCGACCTTCTTCTCCTCTTTCATGATATTTTATTTAAAGGAGGGGAT
TCGGTGCTGTCCGACGATCATGCTTGTCTCCTCGCTCATCACCCGCAGGT
GCTCAGTTTGGTGCGTCACCTTGTTTTGGGCAACTCCTCGCTTTTTTCCC
CCTACCCCTCGTTCTCGAACATTCGCGTGCGCCTGTATCAGGTCTGGTTT
GTCTTGTCCCTTCTTTGGGGTCGGGCTGATAGCAACAGCAGCAGCAGGAG
TAGCAGTGGCAGGGCGGTAGGAGGGAGGAAGGGTCAGGTTGAGAAAGGCG
AGGGGTTTGCACAGGAGGTGCTTCAGCGGGTGTTGCCCGTGGGGAGTAAA
GAGTATTGGGCGTGGATGGAAGGCGTGGGGGGGGTCTTGATTGAGGGCAT
GAAACTAGTCCAGCAAGGTGCTCCTACGAAGATGGAAGAGGAGGACCGGC
AGGAATTGGAGGGGTTGTGGGGGCAGAGTGTCGATCTCCTTTCCATCGCA
TCAGAAGATGTACGCAGAAATGTCTTGCAAGCATCAGCTTTTAAATATGG
CAAGAGGGAAGTAGAGATGCTAGAAGGGGAGTTGATGCTGGTAGGGGCGG
CATCCGCAGTGTTAAGTTGA
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protein sequence of NO10G01200.1

>NO10G01200.1-protein ID=NO10G01200.1-protein|Name=NO10G01200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=940bp
MPRATPPARPQPATGDVIGNALQLMHGSQDEAKFAGLLLLVKHLSTTTTS
PTNATSDNNDIRQLVLEAVTPQFLARLLASRASSPNSQHFRGVALAVLST
LVQDPTLVPRLRPLLKHVLSALDDISALSQASQGLVIGYEEARMNVVEDC
LFFLYALTQHDRTVACVREFDTLEVFRRVTACMLELRNMRITISNSISSH
SSSSSSSGSSSSSGSGSRSSNCRSRRMGKIEENEVTEAAEAVAAMKTVDE
EGKGGTSDASPASPPRSSTDTQNTTITTDNIPSATVAAGTIDHPTRLLTE
ACATLHEVLLMGHELQCPQRLKPDDRDTLVTLSFILEEEGGDVKLRILHL
LNFLFSHVRSSHQAAAGAAAGSARDGSGGERYMTNTSVHMLGRHMRGALL
QLLHGALRERNRDPALRLLVHTLAIFGQTWAIEDEDEEGREEGKEKAVLS
INPRAEGERKGVTGMSRGTCVGFFVHVLSAETRMAAEELESLANVGEEVM
EKDLSLKDRLGRVKEMIPLCVDGLDSVLRFLCGAGDGPECLRLQQQADEE
YHNHQQERTKTWVMLPGEKLLEIRASLHDAIGALLKLLHDGAREWKQQQQ
QRQNCSAGEEAKKGELEMEGVYREVARFLSAVLAEDEACMTGEEALSVLP
FVMYLAGETEGGGGGYEGGREGGRVGWVLPWVSRVLSPGTAEEEAEEGIA
VLFRLVDECQIHLWFAKHLLRPLLPISEKGEKQHIDLLLLFHDILFKGGD
SVLSDDHACLLAHHPQVLSLVRHLVLGNSSLFSPYPSFSNIRVRLYQVWF
VLSLLWGRADSNSSSRSSSGRAVGGRKGQVEKGEGFAQEVLQRVLPVGSK
EYWAWMEGVGGVLIEGMKLVQQGAPTKMEEEDRQELEGLWGQSVDLLSIA
SEDVRRNVLQASAFKYGKREVEMLEGELMLVGAASAVLS*
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Synonyms
Publications