NO10G01080, NO10G01080 (gene) Nannochloropsis oceanica

Overview
NameNO10G01080
Unique NameNO10G01080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3543
Alignment locationchr10:327185..330727 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:327185..330727 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO10G01080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL053nonsL053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR017ngnoR017Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G01080.1NO10G01080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586568gene_4109Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G01080.1NO10G01080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G01080 ID=NO10G01080|Name=NO10G01080|organism=Nannochloropsis oceanica|type=gene|length=3543bp
ATGGGCGAGCTGTTGGCTCGTGCCGCCATTCAGCAGCAGCAGGAGGAAAA
TGAGGAGGAAGGGAAGAAAGAGAAATCACGGCAGGTGCACCAGGAGGCCT
CTATCTTTATATCCGCTTCTTCCTCCCCCTCTTCCTCCGCCTCCTTATCT
TCATTGGCCGCCGCCTTCAGGAGTACATTCGACCGAGGTCAAGGTCCGCA
GCGCCTTGCTGCCACTGCCCTTTCTTCTTCTTTTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTTCCTCCCCTCCTCCTCCCCTTCTTCCGTTCTTCACCTCAGC
GTCTACAGCCATGGCAACCCTGCAACGCCGCTCTCTTCCTCATGGTGACC
GGGCATTCGATACCTCCTCCCTCCTTTCCTCCCTCCCCCCAACCCTCCCT
CGTCCTCAGGTCAAACATGTGCTGGAAGTCCGCGTGGTGGGGAGGTGCCC
CGTAGAGCTGAATCCAGCCTTGACGAGGACGACTGCAGAAGGGAGGGAAG
GAGGGGGGGCAGAGGATATGATTGGTCGGTTGTCCGTGTATGTGCGTTAC
ACCTTCCGATGCTCCTCCTCTTCCTCCTTTTCTTTTCCCCCTTCCTCCTC
CTCTCCCCCTTCGTTCTCGTTGGTGAGGAGTAGGGAGGATGACAAGGTGC
GTGTTAGCGCCGTCTCTTCCACTGGAGGAATAAGAGTGAGATACGATAGC
GAAGGAGCACGAGGAGCTGCAGCAGCAACAGCAGCAGCCCCTGCAACAGC
AGGGGCATTAGGCATCTCCATGCTCGCCAGCCTCAGTACTGACAACGAGG
GCGGGAGGGAGGGAGGGCAGAAAACGGCATGTTTGTGGTGGGACGTTGAG
GATGAGGCATTGAACGCCAAGGGACGTCACGTGGTATACACGGGTTATGG
GGAAGACCCGGCCGAGCGGTTGTGGGGAGGAGGGGGAGAGGAGGTTGGAT
TGACGTTGCAGGTGTGGGTGACTGGTTTGCCGTGCGAGGAGGAGGGGGGG
GAGGGAAGGAAGGAGGGAGAGGGACAGTTATTTGGGACGTCGCATATTTC
TATGGAGGCATTGAGGAGTTTGATGACACCGGAGACGGCCGTGAGAACCT
TCAGGTTGCAGGTGCATCCGCCGCGTCCAGGGAGAGAGGGAGGGATGGAG
GGAGGGATGGGTGGTGTGTGCCCCATTCGGATCCCAACGTTGGAAGTGGC
ATTGGCGTATGACCGCGAGCCATTTTTGGTGTCGAGGGTAAGGCAACGGA
CTGAGGCAGCAGCAGCAGCAGCGGCAGAAGAGGCGGCGGCGGCGGCGGCG
GCGGAGTCGCCTAATGCGGGGGAGGAAGAGACAAAGGAGCGAGGGGAGCA
GCAGGAGCAGCCGCCACCGCAGTCGACTGTATTGTCCGAACGCCGTTTTC
CCTTCCCTCGCGATGGCAGTCAAACTAAGGCGAGTTGGGAGGAGGAGGAG
GGGGAAGCAGCCGCGAGAGCAGCAGCCACCGCCGCCGCCGCCGCCGCCGC
CGCCGCCGCAGCAGCAGCAGCAGCAGCCGCATCTTCACGTGAGCGGTTAG
CGCTTTCCGACTTGGGCGCGTCTTTTTCTTGTGCCTCCTCCCCCTCTGCA
TCGGCCGCAGATGATCGAAAAGGGACACTCGTTGTGCAGCTCGTGGAACT
CACTGGTAGCCTGCCCTCCTCCTGGCTGAGCATTTCACCCTCCCTCCATT
CCTCGTCCTCGCTTTATGTACAGTATGTCATTGGAACCGGGAGTGAAGAT
GGAGGTGCGTATTTCCGTCATGAGGTCTCGGTGGTTGAAGGAGGGGGGGA
GGGAGGGTCGATTGCACGCTTGTCGTTTTTGGATCGGGTCGAGATTGCGA
TTAACGACTTATTTGTCAGTTCTGTACTTGATGGGCCGCTGGTGTTGAGG
TTGTGTCGAGAGAGGGAGGGAGAGAGGGAGAAAAGGGAGGTTCTGGGTGT
TTTGCAGGTACCCTTGAAACAATTGCTGTCGAAGTCCACGGGCGTGGCCG
GGGTGTTTGCATGGGAGGAAGGGAAGAAGGGGGGCAGGGAGACAGAGGCA
GGAGGGAGGGTGGCGGTGTATTTTGAGCACCGGAAGCCTTTTTTCCCGGG
GGTGACTCGGAATGAGGACGAGGAGGAGAATGAGGAGGAGGATAAGGAGG
AGGACGAGGAGGAGGGCGCTGGGGAAGCAGACACTTGGCGCACCGCTGGT
GGTGGCGGAGGGGGCAGAGGGGGTAGAGGGATGGAGGAGGATGACGACGA
GGAAGATGAGGAAGGAGGGGACGAAGGAAATGGGGGTGGTGGCAACGCGG
GAGGAGGGGGGTTTGAATCTACAGGGGCCGTAGCGAAGGATCAGGACAAG
GGAGGGAGGGAGGGAGACATGGACGTCTTACATGCAATGGTCGCTCAACT
CACTGAAATGGATCGGAGCCTCTTGGCGAGTGTTCGAATGGAGGGAGGGA
GGGAGGGAGAGTTGGATGCGAAGGCCACTATGAGGATGCCGGTGATGCAG
GAAATGGCGATTCAGACAGAGAAAGAGGGAGACGCTATATTGAGTGTCAA
TGTGAGTGCTCCTACTGTACCTGTGATTTCTTTTGATTCGTCCTTCAGGT
CTCCTGCTTCTTCTCCTTCTCCTCTTTTTGCTCGTCGAATGGCGATGGGT
GAGAGGGTAACGAGGGCGATGACCACGGACGAGGAGGAGAAAGAGGAGGA
AGAGGAGACAGAGAAGGGAGATGAGGTGGAGGAAGAGGGGGAGGAAGAGG
GGGGGGAGTTAAAAGACGGGAAAGGGAGCAAGAGGAAAGAGCATGAAGAC
GAGGAGAGCTGGTCAGGGCCAAGATTGAAGAAGGAGGGTAGAGAGCAGAA
GGCATTTTCCTTGTCTCGAAGCCGTGCCATGGGTATCCGTACGGAGCATG
ACAGCGCCTCCAGTGGCAGCAATACCGACAGCGACAACATCAGAACGACG
AATCATTCCTCTGCCATCGGTATTTCTACAGAAGCAGCAGCCACTACCGG
GAGCCCCTGCCGAAGACCTCAGAAGCAAAAGATGGCTCTGGCGGACCTCA
GCCACAGTTACAACAACAGCCGATCTATAAGCACCAGCGACAACAGCGGC
AAGATGATCGAAAAGATGAGGAGAAGGATGGGATTTGAGAAGGAACGGGA
GAAGGGGGAGATGGATGCAGAGGGAAGGATACCCCGCTACAGGCGGTATC
TTCAGTATTCAGACGAGGAGACGGATCGAATAGCCAGAATCATGATGGGT
AAATCACGCCTTTCGTTGTCTTCAGCTTCGGCAGCGTTCTCGGCGTCGGG
GGGGTCTCGGGCTTTTGCCTCGTCTTATTATTCCTCAAGAGGATAAAAGG
AGGAAAAAGAGAAGGAGGGAGTGGGAGGAGGTGGTCGCCAGACATATGAA
TGTGCATTTGTACAGCCCGACTCAAATGAAGATAAAATAAATAGCCTGCG
TATGAAGATTTATACTATCTGTAGCCACCCGGAAAGAAAGACA
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protein sequence of NO10G01080.1

>NO10G01080.1-protein ID=NO10G01080.1-protein|Name=NO10G01080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1132bp
MGELLARAAIQQQQEENEEEGKKEKSRQVHQEASIFISASSSPSSSASLS
SLAAAFRSTFDRGQGPQRLAATALSSSFPPPPPPPPPPPPPPPPPPPPPP
PPPSSPPPPLLPFFTSASTAMATLQRRSLPHGDRAFDTSSLLSSLPPTLP
RPQVKHVLEVRVVGRCPVELNPALTRTTAEGREGGGAEDMIGRLSVYVRY
TFRCSSSSSFSFPPSSSSPPSFSLVRSREDDKVRVSAVSSTGGIRVRYDS
EGARGAAAATAAAPATAGALGISMLASLSTDNEGGREGGQKTACLWWDVE
DEALNAKGRHVVYTGYGEDPAERLWGGGGEEVGLTLQVWVTGLPCEEEGG
EGRKEGEGQLFGTSHISMEALRSLMTPETAVRTFRLQVHPPRPGREGGME
GGMGGVCPIRIPTLEVALAYDREPFLVSRVRQRTEAAAAAAAEEAAAAAA
AESPNAGEEETKERGEQQEQPPPQSTVLSERRFPFPRDGSQTKASWEEEE
GEAAARAAATAAAAAAAAAAAAAAAAASSRERLALSDLGASFSCASSPSA
SAADDRKGTLVVQLVELTGSLPSSWLSISPSLHSSSSLYVQYVIGTGSED
GGAYFRHEVSVVEGGGEGGSIARLSFLDRVEIAINDLFVSSVLDGPLVLR
LCREREGEREKREVLGVLQVPLKQLLSKSTGVAGVFAWEEGKKGGRETEA
GGRVAVYFEHRKPFFPGVTRNEDEEENEEEDKEEDEEEGAGEADTWRTAG
GGGGGRGGRGMEEDDDEEDEEGGDEGNGGGGNAGGGGFESTGAVAKDQDK
GGREGDMDVLHAMVAQLTEMDRSLLASVRMEGGREGELDAKATMRMPVMQ
EMAIQTEKEGDAILSVNVSAPTVPVISFDSSFRSPASSPSPLFARRMAMG
ERVTRAMTTDEEEKEEEEETEKGDEVEEEGEEEGGELKDGKGSKRKEHED
EESWSGPRLKKEGREQKAFSLSRSRAMGIRTEHDSASSGSNTDSDNIRTT
NHSSAIGISTEAAATTGSPCRRPQKQKMALADLSHSYNNSRSISTSDNSG
KMIEKMRRRMGFEKEREKGEMDAEGRIPRYRRYLQYSDEETDRIARIMMG
KSRLSLSSASAAFSASGGSRAFASSYYSSRG*
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Synonyms
Publications