NO10G01030, NO10G01030 (gene) Nannochloropsis oceanica

Overview
NameNO10G01030
Unique NameNO10G01030
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length899
Alignment locationchr10:314969..315867 -

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Properties
Property NameValue
DescriptionTRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:314969..315867 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR006634TLC-dom
Homology
BLAST of NO10G01030 vs. NCBI_GenBank
Match: XP_007514791.1 (predicted protein [Bathycoccus prasinos] >CCO15031.1 predicted protein [Bathycoccus prasinos])

HSP 1 Score: 141.0 bits (354), Expect = 5.200e-30
Identity = 80/189 (42.33%), Postives = 114/189 (60.32%), Query Frame = 0
Query:   47 KTFDFRNRVVSILHAILSAYLTF--FLVLLQTPCD-IGGPNTRNQIITLNVSAGYFLYDYAACSLNDLRNKHFDAMNFFHHLATVAGLLTGLITQRSGAELGMCLFLMEVSNPFMHMIHIFRELGYNDSPVAEANKALFAIIFTFARIVAGPVLTYYSMICPRTHWVIKVGACGILLVSLLWFSKIVAM 233
            KT DF NR VSI+HA+++ YL++  F  +  +  D +G  NT  Q   + VS  YF+YD   C    +    FDA+   HH+ T+ GL +G++ Q+SG EL  CLFLMEVSNP +H+  + RE+   DS  +  N  LFA +F   R+V GP L Y ++ C  +  ++K+GA GIL VS+LW  KI+ M
Sbjct:   38 KTADFSNRFVSIVHALIAIYLSYESFESIDSSMFDKVGTKNTPAQTYCMAVSLSYFIYDCLYC----IVTFEFDAV--VHHIFTIGGLTSGVVNQKSGVELVGCLFLMEVSNPSLHLRSLLREMRMKDSMFSTLNDLLFAGLFLVCRLVLGPPLVYKTLTCKNSDLLVKIGAFGILAVSVLWGWKIIKM 220          
BLAST of NO10G01030 vs. NCBI_GenBank
Match: XP_023876018.1 (transmembrane protein 136-like isoform X2 [Quercus suber])

HSP 1 Score: 140.6 bits (353), Expect = 6.800e-30
Identity = 82/207 (39.61%), Postives = 126/207 (60.87%), Query Frame = 0
Query:   30 AWTVVFVVV-CVLPRISDKTFDFRNRVVSILHAILSAYLTFFLVL-LQTP-CDIGGPNTRNQIITLNVSAGYFLYDYAACSLNDLRNKHFDAMNFFHHLATVAGLLTGLITQRSGAELGMCLFLMEVSNPFMHMIHIFRELGYNDSPVAEANKALFAIIFTFARIVAGPVLTYYSMICPRTHWVIKVGACGILLVSLLWFSKIVAML 234
            +W+ +F++   V P++S   FDF NRVVS +HAIL+  L    V   + P C +   ++  Q+ TL+V+  Y +YD   C    L +K     N  HHL ++ G+  GLI ++ G+E+ + L++ E+S+PF+H+  + +ELGY DS +  A   LFA+IFTFAR+  GP LTY +++     ++IK  A G+ LVS  WF KIVAM+
Sbjct:   15 SWSTIFLLTRRVFPKLS---FDFCNRVVSTIHAILAVILASLTVQDWRCPVCPLASKSSPKQMQTLSVTLSYMIYDLLCC----LFDKRVKLDNSIHHLVSIVGIGAGLIYKKCGSEMVVALWITEISSPFLHLRELLKELGYKDSDLNFAADILFAVIFTFARMGGGPYLTYVTLVA-NNPFLIKAMALGLQLVSAFWFYKIVAMV 213          
BLAST of NO10G01030 vs. NCBI_GenBank
Match: XP_023876017.1 (transmembrane protein 136-like isoform X1 [Quercus suber])

HSP 1 Score: 137.1 bits (344), Expect = 7.600e-29
Identity = 81/207 (39.13%), Postives = 124/207 (59.90%), Query Frame = 0
Query:   30 AWTVVFVVV-CVLPRISDKTFDFRNRVVSILHAILSAYLTFFLVL-LQTP-CDIGGPNTRNQIITLNVSAGYFLYDYAACSLNDLRNKHFDAMNFFHHLATVAGLLTGLITQRSGAELGMCLFLMEVSNPFMHMIHIFRELGYNDSPVAEANKALFAIIFTFARIVAGPVLTYYSMICPRTHWVIKVGACGILLVSLLWFSKIVAML 234
            +W+ +F++   V P++S   FDF NRVVS +HAIL+  L    V   + P C +   ++  Q+ TL+V+  Y +YD   C    L +K     N  HHL ++ G+  GLI ++ G+E+ + L++ E+S+PF+H+  + +ELGY DS +  A   LFA+IFTFAR+  GP L Y + +     ++IKV A G+ LVS  WF KI AM+
Sbjct:   15 SWSTIFLLTRRVFPKLS---FDFCNRVVSTIHAILAVILASLTVQDWRCPVCPLASKSSPKQMQTLSVTLSYMIYDLLCC----LFDKRVKLDNSIHHLVSIVGIGAGLIYKKCGSEMVVALWITEISSPFLHLRELLKELGYKDSDLNFAADILFAVIFTFARMGCGPYLMYVT-LAANNPFLIKVMALGLQLVSAFWFYKIAAMV 213          
BLAST of NO10G01030 vs. NCBI_GenBank
Match: XP_015969640.1 (transmembrane protein 136 isoform X2 [Arachis duranensis])

HSP 1 Score: 136.7 bits (343), Expect = 9.900e-29
Identity = 79/206 (38.35%), Postives = 120/206 (58.25%), Query Frame = 0
Query:   30 AWTVVFVVVCVLPRISDKTFDFRNRVVSILHAILSAYLTFFLVL-LQTP-CDIGGPNTRNQIITLNVSAGYFLYDYAACSLNDLRNKHFDAMNFFHHLATVAGLLTGLITQRSGAELGMCLFLMEVSNPFMHMIHIFRELGYNDSPVAEANKALFAIIFTFARIVAGPVLTYYSMICPRTHWVIKVGACGILLVSLLWFSKIVAML 234
            +W+  F+V   +  +  ++FDF NRV+S +HAIL+  L    V   + P C +   ++  Q+  L VS  Y +YD   C    L  +     N  HHL ++ GL  GL  Q+ G+E+  C+++ E+S+PF+H+  + +ELGY D+P+  A   LFA IFTFAR+VAGP LTY + +     ++IK  A G+ LVS  WF KI+ M+
Sbjct:   15 SWSSAFLVTRRI--LQKRSFDFSNRVISTIHAILAVTLASISVQDWKCPICPVASNSSLTQMQVLAVSVSYLIYDLVCC----LFGERVSMDNTIHHLVSILGLGAGLCYQKCGSEMVACVWITEMSSPFLHLRELLKELGYRDTPLNLAADLLFAAIFTFARMVAGPYLTYVT-LSANNPFLIKATAFGLQLVSAFWFYKILRMV 213          
BLAST of NO10G01030 vs. NCBI_GenBank
Match: XP_023882105.1 (transmembrane protein 136-like [Quercus suber])

HSP 1 Score: 136.0 bits (341), Expect = 1.700e-28
Identity = 79/207 (38.16%), Postives = 123/207 (59.42%), Query Frame = 0
Query:   30 AWTVVFVVV-CVLPRISDKTFDFRNRVVSILHAILSAYLTFFLVL-LQTP-CDIGGPNTRNQIITLNVSAGYFLYDYAACSLNDLRNKHFDAMNFFHHLATVAGLLTGLITQRSGAELGMCLFLMEVSNPFMHMIHIFRELGYNDSPVAEANKALFAIIFTFARIVAGPVLTYYSMICPRTHWVIKVGACGILLVSLLWFSKIVAML 234
            +W+ +F++   V P++S   FDF NRVVS +HA L+  LT   V   + P C +   ++  Q+ TL +S  Y +YD   C    L +K     N  HHL ++ G   GL  ++ G+E+ + L++ E+S+PF+H+  + +ELGY D+ ++ A   LFA+IFTFAR+  GP LTY +++     ++IK  A G+ LVS  WF KIV M+
Sbjct:   15 SWSTIFLLTRRVFPKLS---FDFSNRVVSTIHATLAVILTSLTVQDWRCPVCPLASKSSPKQMQTLAMSLSYMIYDMVCC----LFDKQVKLDNSIHHLVSIVGFGAGLAYKKCGSEMVVALWITEISSPFLHLRELLKELGYKDTDLSLAADILFAVIFTFARMGGGPYLTYVTLVA-NNPFLIKAMALGLQLVSAFWFYKIVLMV 213          
BLAST of NO10G01030 vs. NCBI_GenBank
Match: XP_006595920.1 (PREDICTED: transmembrane protein 136-like isoform X1 [Glycine max] >KHN20950.1 Transmembrane protein 136 [Glycine soja] >KRH15141.1 hypothetical protein GLYMA_14G071100 [Glycine max] >KRH15142.1 hypothetical protein GLYMA_14G071100 [Glycine max] >KRH15143.1 hypothetical protein GLYMA_14G071100 [Glycine max])

HSP 1 Score: 135.2 bits (339), Expect = 2.900e-28
Identity = 82/207 (39.61%), Postives = 121/207 (58.45%), Query Frame = 0
Query:   30 AWTVVFVVV-CVLPRISDKTFDFRNRVVSILHAILSAYLTFFLVL-LQTP-CDIGGPNTRNQIITLNVSAGYFLYDYAACSLNDLRNKHFDAMNFFHHLATVAGLLTGLITQRSGAELGMCLFLMEVSNPFMHMIHIFRELGYNDSPVAEANKALFAIIFTFARIVAGPVLTYYSMICPRTHWVIKVGACGILLVSLLWFSKIVAML 234
            +WT  FV+V  + P+   ++FDF NRVVS LHA L+  L +  V   + P C +G  ++  Q+  L VS  Y +YD A C L++  N      N  HHL ++ G+  GL  Q+ G+E+   +++ E+S+PF+H+  + +ELGY D+ +  A   LFA IFTFAR+V GP LTY + +      +IK    G+ LVS  WF KIV M+
Sbjct:   15 SWTSAFVLVRRIFPK---RSFDFCNRVVSTLHATLAVTLAWLSVKDWRCPICPVGSKSSPKQMQVLAVSLSYLIYDLACCQLDERVNLD----NTVHHLVSIVGIGAGLSHQKCGSEMVATIWITEISSPFLHLRELLKELGYRDTLLNLAADILFAAIFTFARMVVGPCLTYVT-LSANYPLLIKAMGLGLQLVSAFWFFKIVRMM 213          
BLAST of NO10G01030 vs. NCBI_GenBank
Match: XP_021638597.1 (transmembrane protein 136-like isoform X1 [Hevea brasiliensis])

HSP 1 Score: 135.2 bits (339), Expect = 2.900e-28
Identity = 82/212 (38.68%), Postives = 123/212 (58.02%), Query Frame = 0
Query:   24 LALSTGAWTVVFVVVCVLPRISDKTFDFRNRVVSILHAILSAYLTFFLV--LLQTPCDIGGPNTRNQIITLNVSAGYFLYDYAACSLNDLRNKHFDAMNFFHHLATVAGLLTGLITQRSGAELGMCLFLMEVSNPFMHMIHIFRELGYNDSPVAEANKALFAIIFTFARIVAGPVLTYYSMICPRTHWVIKVGACGILLVSLLWFSKIVAML 234
            + L   +W   F+++  L  + +++F+F NR+VS +HAIL+  L    V       C +    + +Q+ TL VS  Y +YD   C    L ++ F+  N  HHL ++ GL  GL  Q+ G+EL   L++ E+S+PF+H+  + +ELGY D+ +  A    FAIIF+FAR+VAGP LTY + I      VI+V A G+ LVS  WF KIV M+
Sbjct:    5 IILGVISWATTFLLIRKL--LPNRSFEFCNRLVSSIHAILAVTLASLSVEDWRCPACPLASKPSSSQMRTLAVSVSYLIYDLICC----LFDQRFNLDNTIHHLVSIVGLGAGLAYQKCGSELVTALWMTEMSSPFLHLRELLKELGYRDTALNLAADMSFAIIFSFARMVAGPYLTYVT-IKANNPLVIEVMALGLQLVSAFWFFKIVRMI 209          
BLAST of NO10G01030 vs. NCBI_GenBank
Match: XP_012842818.1 (PREDICTED: transmembrane protein 136 [Erythranthe guttata] >EYU32894.1 hypothetical protein MIMGU_mgv1a013123mg [Erythranthe guttata])

HSP 1 Score: 134.4 bits (337), Expect = 4.900e-28
Identity = 78/206 (37.86%), Postives = 119/206 (57.77%), Query Frame = 0
Query:   30 AWTVVFVVVCVLPRISDKTFDFRNRVVSILHAILSAYLTFFLVLLQT--PCDIGGPNTRNQIITLNVSAGYFLYDYAACSLNDLRNKHFDAMNFFHHLATVAGLLTGLITQRSGAELGMCLFLMEVSNPFMHMIHIFRELGYNDSPVAEANKALFAIIFTFARIVAGPVLTYYSMICPRTHWVIKVGACGILLVSLLWFSKIVAML 234
            +W  +F+V+  L    +++FDF NR+VS +HA+L+  L    V   +   C     ++  Q+ TL VS GY +YD   C    L +K     N  HHL ++ GLL+GL  QR G+E+   L++ EVS+P +H+  + +ELG+ D+ +  A    FA+IFTFAR++ GP LTY ++       +IK  A G++LVS  WF KI  M+
Sbjct:   15 SWATLFLVLRKL--FPNRSFDFCNRIVSTVHAVLAVTLASLSVQNWSCPVCPFASNSSPKQMQTLAVSVGYLVYDLVCC----LFDKKIKLDNTVHHLVSIVGLLSGLAYQRCGSEMVAALWITEVSSPLLHLRELLKELGHKDTDLNLAADIGFAVIFTFARMIGGPYLTYVTLTA-HNPLLIKAMALGLMLVSAFWFYKIARMI 213          
BLAST of NO10G01030 vs. NCBI_GenBank
Match: XP_016207416.1 (transmembrane protein 136 [Arachis ipaensis])

HSP 1 Score: 134.4 bits (337), Expect = 4.900e-28
Identity = 85/229 (37.12%), Postives = 127/229 (55.46%), Query Frame = 0
Query:   30 AWTVVFVVVCVLPRISDKTFDFRNRVVSILHAILSAYLTFFLVL-LQTP-CDIGGPNTRNQIITLNVSAGYFLYDYAACSLNDLRNKHFDAMNFFHHLATVAGLLTGLITQRSGAELGMCLFLMEVSNPFMHMIHIFRELGYNDSPVAEANKALFAIIFTFARIVAGPVLTYYSMICPRTHWVIKVGACGILLVSLLWFSKIVAMLGKVFGGGKK---GGDRGMNGEKK 254
            +W+  F+V   +  +  ++FDF NRV+S +HAIL+  L    V   + P C +   ++  Q+  L VS  Y +YD   C    L  +     N  HHL ++ GL  GL  Q+ G+E+  C+++ E+S+PF+H+  + +ELGY D+P+  A   LFA IFTFAR+VAGP LTY + +     ++IK  A G+ LVS  WF KI+ M+       K     G   +NG KK
Sbjct:   15 SWSSAFLVTRRI--LQKRSFDFSNRVISTIHAILAVTLASISVQDWKCPICPVASNSSLTQMQVLAVSVSYLIYDLVCC----LFGERVSMDNTIHHLVSILGLGAGLCYQKCGSEMVACVWITEMSSPFLHLRELLKELGYRDTPLNLAADLLFAAIFTFARMVAGPYLTYVT-LSANNPFLIKATALGLQLVSAFWFFKILRMVKYKLTKKKSTSINGTNHVNGIKK 236          
BLAST of NO10G01030 vs. NCBI_GenBank
Match: XP_019436878.1 (PREDICTED: transmembrane protein 136-like [Lupinus angustifolius])

HSP 1 Score: 134.4 bits (337), Expect = 4.900e-28
Identity = 81/207 (39.13%), Postives = 119/207 (57.49%), Query Frame = 0
Query:   30 AWTVVFVVV-CVLPRISDKTFDFRNRVVSILHAILSAYLTFFLVL-LQTP-CDIGGPNTRNQIITLNVSAGYFLYDYAACSLNDLRNKHFDAMNFFHHLATVAGLLTGLITQRSGAELGMCLFLMEVSNPFMHMIHIFRELGYNDSPVAEANKALFAIIFTFARIVAGPVLTYYSMICPRTHWVIKVGACGILLVSLLWFSKIVAML 234
            +WT VF+VV  + P+ S   FDF NR+VS +HA L+  L    V   + P C +   ++  Q+  L VS  Y +YD   C   ++ N      N  HHL ++ GL  GL  Q+ G+E+   L++ E+S+PF+H+  + +E GY D+P+  A   LFAIIFT+AR++AGP LTY + +      +IK    G+ LVS  WF KIV M+
Sbjct:   15 SWTAVFIVVRRIFPKSS---FDFCNRIVSTIHATLAVILASLSVEDWKCPVCPMASQSSYTQMQVLAVSLSYLIYDMVCCLFGEIVNLD----NTIHHLVSIVGLGAGLCYQKCGSEMVAALWVTEMSSPFLHLRELLKECGYRDTPLNLAADFLFAIIFTYARMLAGPYLTYVT-LSANNPLLIKAMGLGLQLVSTFWFFKIVRMM 213          
The following BLAST results are available for this feature:
BLAST of NO10G01030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_007514791.15.200e-3042.33predicted protein [Bathycoccus prasinos] >CCO15031... [more]
XP_023876018.16.800e-3039.61transmembrane protein 136-like isoform X2 [Quercus... [more]
XP_023876017.17.600e-2939.13transmembrane protein 136-like isoform X1 [Quercus... [more]
XP_015969640.19.900e-2938.35transmembrane protein 136 isoform X2 [Arachis dura... [more]
XP_023882105.11.700e-2838.16transmembrane protein 136-like [Quercus suber][more]
XP_006595920.12.900e-2839.61PREDICTED: transmembrane protein 136-like isoform ... [more]
XP_021638597.12.900e-2838.68transmembrane protein 136-like isoform X1 [Hevea b... [more]
XP_012842818.14.900e-2837.86PREDICTED: transmembrane protein 136 [Erythranthe ... [more]
XP_016207416.14.900e-2837.12transmembrane protein 136 [Arachis ipaensis][more]
XP_019436878.14.900e-2839.13PREDICTED: transmembrane protein 136-like [Lupinus... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL053nonsL053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR017ngnoR017Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000972NSK000972Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G01030.1NO10G01030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586588gene_4115Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100196g3gene5168Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G01030.1NO10G01030.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G01030 ID=NO10G01030|Name=NO10G01030|organism=Nannochloropsis oceanica|type=gene|length=899bp
AACACACAGCCCCATACCCAGGCAAATGAAGACTACAGGTATTCCTCCCG
ACGTCCAGCCCTACATAGACATGCTGGCAGACCGTTGGCCAGGCCTGGCC
CTGTCGACGGGAGCCTGGACCGTGGTATTTGTGGTGGTGTGCGTGCTGCC
CCGGATCTCGGACAAGACATTCGACTTCAGGAACCGCGTCGTCTCCATCC
TTCACGCCATCCTGTCCGCCTACCTGACATTTTTCCTCGTCTTGCTCCAG
ACCCCTTGCGACATTGGCGGGCCCAACACTCGCAACCAGATCATAACGCT
GAACGTGAGCGCGGGCTACTTTCTGTACGACTACGCGGCCTGTTCCCTTA
ACGACTTGCGAAACAAGCACTTTGACGCCATGAATTTCTTTCACCACCTC
GCAACCGTCGCCGGTCTTTTAACAGGGCTAATCACTCAACGCTCAGGCGC
CGAATTGGGGATGTGTTTGTTTTTAATGGAGGTCTCCAATCCGTTCATGC
ATATGATCCATATTTTCAGGGAGCTCGGGTATAATGACTCGCCGGTCGCG
GAGGCGAATAAGGCATTGTTTGCGATCATTTTCACATTTGCACGCATTGT
TGCGGGCCCGGTGTTGACTTACTATTCGATGATTTGCCCGAGGACGCACT
GGGTGATTAAGGTCGGGGCATGTGGGATCTTGCTGGTGAGTTTGTTGTGG
TTTTCCAAGATCGTGGCGATGTTGGGTAAGGTCTTTGGAGGGGGCAAGAA
GGGAGGAGACAGAGGGATGAATGGAGAGAAGAAGCGGAAGTAGATTCGAG
AGATCTTGGAAGGGGGGATCGGTGCATTCGGACATATGGGAAGCTGTTGC
AGGAGAAAACACAAAAAGTTAATTTAAATGCATGCCCCCATGGGAGAAT
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protein sequence of NO10G01030.1

>NO10G01030.1-protein ID=NO10G01030.1-protein|Name=NO10G01030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MKTTGIPPDVQPYIDMLADRWPGLALSTGAWTVVFVVVCVLPRISDKTFD
FRNRVVSILHAILSAYLTFFLVLLQTPCDIGGPNTRNQIITLNVSAGYFL
YDYAACSLNDLRNKHFDAMNFFHHLATVAGLLTGLITQRSGAELGMCLFL
MEVSNPFMHMIHIFRELGYNDSPVAEANKALFAIIFTFARIVAGPVLTYY
SMICPRTHWVIKVGACGILLVSLLWFSKIVAMLGKVFGGGKKGGDRGMNG
EKKRK*
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Synonyms
Publications