NO10G01030.1, NO10G01030.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01030.1
Unique NameNO10G01030.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length899
Alignment locationchr10:314969..315867 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:314969..315867 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO10G01030.1 vs.
Match: XP_005854585.1 (hypothetical protein NGA_0175400 [Nannochloropsis gaditana CCMP526]; EKU21766.1 hypothetical protein NGA_0175400 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 397.9 bits (1021), Expect = 2.400e-107
Identity = 194/254 (76.38%), Postives = 217/254 (85.43%), Query Frame = 0 
Query:    1 MKTTGIPPDVQPYIDMLADRWPGLALSTGAWTVVFVVVCVLPRISDKTFDFRNRVVSILHAILSAYLTFFLVLLQTPCDIGGPNTRNQIITLNVSAGYFLYDYAACSLNDLRNKHFDAMNFFHHLATVAGLLTGLITQRSGAELGMCLFLMEVSNPFMHMIHIFRELGYNDSPVAEANKALFAIIFTFARIVAGPVLTYYSMICPRTHWVIKVGACGILLVSLLWFSKIVAMLGKVFGGGKKGGDRGMNGEKKR 255
            MKTT +   +QPY+D+LADRWPGL LST AW+VVF +VCVLP IS  +FDFRNR VSILHA LSAYLT  LVLL+TPC IGGPNTRNQII LNVS GYF+YDY AC+LND+R +HFD MNFFHHLA++AGLLTGLI +RSGAELGMCLFLMEVSNPFMH IH+FRELGYND+PVAEANKALFAIIFT AR+V GP LTYY+++ PRTHWVIK GA GIL VS LWFSKIVAML K F GG +G D+G  GEKKR
Sbjct:    1 MKTTDLLAAIQPYVDILADRWPGLILSTVAWSVVFGLVCVLPAISGTSFDFRNRTVSILHAFLSAYLTLVLVLLETPCKIGGPNTRNQIIVLNVSTGYFIYDYVACTLNDVRKRHFDTMNFFHHLASLAGLLTGLINERSGAELGMCLFLMEVSNPFMHTIHLFRELGYNDAPVAEANKALFAIIFTLARVVGGPFLTYYTLVSPRTHWVIKAGALGILAVSFLWFSKIVAMLSKAF-GGSEGKDKG--GEKKR 251
The following BLAST results are available for this feature:
BLAST of NO10G01030.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854585.12.400e-10776.38hypothetical protein NGA_0175400 [Nannochloropsis ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01030NO10G01030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01030.1NO10G01030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01030.1.cds1NO10G01030.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01030.1 ID=NO10G01030.1|Name=NO10G01030.1|organism=Nannochloropsis oceanica|type=mRNA|length=899bp
AACACACAGCCCCATACCCAGGCAAATGAAGACTACAGGTATTCCTCCCG
ACGTCCAGCCCTACATAGACATGCTGGCAGACCGTTGGCCAGGCCTGGCC
CTGTCGACGGGAGCCTGGACCGTGGTATTTGTGGTGGTGTGCGTGCTGCC
CCGGATCTCGGACAAGACATTCGACTTCAGGAACCGCGTCGTCTCCATCC
TTCACGCCATCCTGTCCGCCTACCTGACATTTTTCCTCGTCTTGCTCCAG
ACCCCTTGCGACATTGGCGGGCCCAACACTCGCAACCAGATCATAACGCT
GAACGTGAGCGCGGGCTACTTTCTGTACGACTACGCGGCCTGTTCCCTTA
ACGACTTGCGAAACAAGCACTTTGACGCCATGAATTTCTTTCACCACCTC
GCAACCGTCGCCGGTCTTTTAACAGGGCTAATCACTCAACGCTCAGGCGC
CGAATTGGGGATGTGTTTGTTTTTAATGGAGGTCTCCAATCCGTTCATGC
ATATGATCCATATTTTCAGGGAGCTCGGGTATAATGACTCGCCGGTCGCG
GAGGCGAATAAGGCATTGTTTGCGATCATTTTCACATTTGCACGCATTGT
TGCGGGCCCGGTGTTGACTTACTATTCGATGATTTGCCCGAGGACGCACT
GGGTGATTAAGGTCGGGGCATGTGGGATCTTGCTGGTGAGTTTGTTGTGG
TTTTCCAAGATCGTGGCGATGTTGGGTAAGGTCTTTGGAGGGGGCAAGAA
GGGAGGAGACAGAGGGATGAATGGAGAGAAGAAGCGGAAGTAGATTCGAG
AGATCTTGGAAGGGGGGATCGGTGCATTCGGACATATGGGAAGCTGTTGC
AGGAGAAAACACAAAAAGTTAATTTAAATGCATGCCCCCATGGGAGAAT
back to top

protein sequence of NO10G01030.1

>NO10G01030.1-protein ID=NO10G01030.1-protein|Name=NO10G01030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MKTTGIPPDVQPYIDMLADRWPGLALSTGAWTVVFVVVCVLPRISDKTFD
FRNRVVSILHAILSAYLTFFLVLLQTPCDIGGPNTRNQIITLNVSAGYFL
YDYAACSLNDLRNKHFDAMNFFHHLATVAGLLTGLITQRSGAELGMCLFL
MEVSNPFMHMIHIFRELGYNDSPVAEANKALFAIIFTFARIVAGPVLTYY
SMICPRTHWVIKVGACGILLVSLLWFSKIVAMLGKVFGGGKKGGDRGMNG
EKKRK*
back to top

mRNA from alignment at chr10:314969..315867-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01030.1 ID=NO10G01030.1|Name=NO10G01030.1|organism=Nannochloropsis oceanica|type=mRNA|length=899bp|location=Sequence derived from alignment at chr10:314969..315867- (Nannochloropsis oceanica)
AACACACAGCCCCATACCCAGGCAAATGAAGACTACAGGTATTCCTCCCG
ACGTCCAGCCCTACATAGACATGCTGGCAGACCGTTGGCCAGGCCTGGCC
CTGTCGACGGGAGCCTGGACCGTGGTATTTGTGGTGGTGTGCGTGCTGCC
CCGGATCTCGGACAAGACATTCGACTTCAGGAACCGCGTCGTCTCCATCC
TTCACGCCATCCTGTCCGCCTACCTGACATTTTTCCTCGTCTTGCTCCAG
ACCCCTTGCGACATTGGCGGGCCCAACACTCGCAACCAGATCATAACGCT
GAACGTGAGCGCGGGCTACTTTCTGTACGACTACGCGGCCTGTTCCCTTA
ACGACTTGCGAAACAAGCACTTTGACGCCATGAATTTCTTTCACCACCTC
GCAACCGTCGCCGGTCTTTTAACAGGGCTAATCACTCAACGCTCAGGCGC
CGAATTGGGGATGTGTTTGTTTTTAATGGAGGTCTCCAATCCGTTCATGC
ATATGATCCATATTTTCAGGGAGCTCGGGTATAATGACTCGCCGGTCGCG
GAGGCGAATAAGGCATTGTTTGCGATCATTTTCACATTTGCACGCATTGT
TGCGGGCCCGGTGTTGACTTACTATTCGATGATTTGCCCGAGGACGCACT
GGGTGATTAAGGTCGGGGCATGTGGGATCTTGCTGGTGAGTTTGTTGTGG
TTTTCCAAGATCGTGGCGATGTTGGGTAAGGTCTTTGGAGGGGGCAAGAA
GGGAGGAGACAGAGGGATGAATGGAGAGAAGAAGCGGAAGTAGATTCGAG
AGATCTTGGAAGGGGGGATCGGTGCATTCGGACATATGGGAAGCTGTTGC
AGGAGAAAACACAAAAAGTTAATTTAAATGCATGCCCCCATGGGAGAAT
back to top

Coding sequence (CDS) from alignment at chr10:314969..315867-

>NO10G01030.1 ID=NO10G01030.1|Name=NO10G01030.1|organism=Nannochloropsis oceanica|type=CDS|length=768bp|location=Sequence derived from alignment at chr10:314969..315867- (Nannochloropsis oceanica)
ATGAAGACTACAGGTATTCCTCCCGACGTCCAGCCCTACATAGACATGCT
GGCAGACCGTTGGCCAGGCCTGGCCCTGTCGACGGGAGCCTGGACCGTGG
TATTTGTGGTGGTGTGCGTGCTGCCCCGGATCTCGGACAAGACATTCGAC
TTCAGGAACCGCGTCGTCTCCATCCTTCACGCCATCCTGTCCGCCTACCT
GACATTTTTCCTCGTCTTGCTCCAGACCCCTTGCGACATTGGCGGGCCCA
ACACTCGCAACCAGATCATAACGCTGAACGTGAGCGCGGGCTACTTTCTG
TACGACTACGCGGCCTGTTCCCTTAACGACTTGCGAAACAAGCACTTTGA
CGCCATGAATTTCTTTCACCACCTCGCAACCGTCGCCGGTCTTTTAACAG
GGCTAATCACTCAACGCTCAGGCGCCGAATTGGGGATGTGTTTGTTTTTA
ATGGAGGTCTCCAATCCGTTCATGCATATGATCCATATTTTCAGGGAGCT
CGGGTATAATGACTCGCCGGTCGCGGAGGCGAATAAGGCATTGTTTGCGA
TCATTTTCACATTTGCACGCATTGTTGCGGGCCCGGTGTTGACTTACTAT
TCGATGATTTGCCCGAGGACGCACTGGGTGATTAAGGTCGGGGCATGTGG
GATCTTGCTGGTGAGTTTGTTGTGGTTTTCCAAGATCGTGGCGATGTTGG
GTAAGGTCTTTGGAGGGGGCAAGAAGGGAGGAGACAGAGGGATGAATGGA
GAGAAGAAGCGGAAGTAG
back to top
Synonyms
Publications