NO10G00820, NO10G00820 (gene) Nannochloropsis oceanica

Overview
NameNO10G00820
Unique NameNO10G00820
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1138
Alignment locationchr10:267283..268420 -

Link to JBrowse

Properties
Property NameValue
DescriptionZinc fyve domain containing 21
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:267283..268420 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR011011Znf_FYVE_PHD
IPR017455Znf_FYVE-rel
IPR000306Znf_FYVE
Homology
[Close]
BLAST of NO10G00820 vs. NCBI_GenBank
Match: XP_007518419.1 (PREDICTED: zinc finger FYVE domain-containing protein 21 isoform X1 [Erinaceus europaeus])

HSP 1 Score: 85.9 bits (211), Expect = 2.500e-13
Identity = 42/105 (40.00%), Postives = 55/105 (52.38%), Query Frame = 0 
Query:   76 PRYVMDEEIERCFGCAVAFDFVHRRHHCRRCRNIFCAACTSRERPVLLYMLTDPVRVCLRCGSEVLKENDFIDVHLHALLKGLEVTMPRGVLGKRHPVTLLLSPD 181
            P++V D+E  RC  C   FDF+ R+HHCRRC   FC  C S++  +      DPVR C RC    L+E +F D  L  LL G    +  G  GK   +   LSP+
Sbjct:   39 PQWVPDKECPRCMHCDAKFDFLTRKHHCRRCGKCFCDKCCSQKVALRRMCFVDPVRQCGRCALVSLREAEFFDRQLRVLLAGATFLVTFGDSGKSEAMVCRLSPN 143
[Close]
BLAST of NO10G00820 vs. NCBI_GenBank
Match: XP_007518420.1 (PREDICTED: zinc finger FYVE domain-containing protein 21 isoform X2 [Erinaceus europaeus])

HSP 1 Score: 85.9 bits (211), Expect = 2.500e-13
Identity = 42/105 (40.00%), Postives = 55/105 (52.38%), Query Frame = 0 
Query:   76 PRYVMDEEIERCFGCAVAFDFVHRRHHCRRCRNIFCAACTSRERPVLLYMLTDPVRVCLRCGSEVLKENDFIDVHLHALLKGLEVTMPRGVLGKRHPVTLLLSPD 181
            P++V D+E  RC  C   FDF+ R+HHCRRC   FC  C S++  +      DPVR C RC    L+E +F D  L  LL G    +  G  GK   +   LSP+
Sbjct:   39 PQWVPDKECPRCMHCDAKFDFLTRKHHCRRCGKCFCDKCCSQKVALRRMCFVDPVRQCGRCALVSLREAEFFDRQLRVLLAGATFLVTFGDSGKSEAMVCRLSPN 143
[Close]
BLAST of NO10G00820 vs. NCBI_GenBank
Match: XP_024117227.1 (zinc finger FYVE domain-containing protein 21 isoform X4 [Oryzias melastigma])

HSP 1 Score: 85.9 bits (211), Expect = 2.500e-13
Identity = 40/103 (38.83%), Postives = 53/103 (51.46%), Query Frame = 0 
Query:   76 PRYVMDEEIERCFGCAVAFDFVHRRHHCRRCRNIFCAACTSRERPVLLYMLTDPVRVCLRCGSEVLKENDFIDVHLHALLKGLEVTMPRGVLGKRHPVTLLLS 179
            P++V D+E  RC  C + FDF+ R+HHCRRC   FC  C S++ P+      DPVR C  C     KE DF D  L  L+ G    +  G   K   +T  L+
Sbjct:   35 PQWVPDKECHRCMQCDIKFDFMKRKHHCRRCGRCFCDKCCSKKVPLARMCFVDPVRHCAECSLVSQKEMDFFDKQLKVLIAGATFNVTSGESEKPEMMTCRLT 137
[Close]
BLAST of NO10G00820 vs. NCBI_GenBank
Match: XP_024117225.1 (zinc finger FYVE domain-containing protein 21 isoform X2 [Oryzias melastigma])

HSP 1 Score: 85.9 bits (211), Expect = 2.500e-13
Identity = 40/103 (38.83%), Postives = 53/103 (51.46%), Query Frame = 0 
Query:   76 PRYVMDEEIERCFGCAVAFDFVHRRHHCRRCRNIFCAACTSRERPVLLYMLTDPVRVCLRCGSEVLKENDFIDVHLHALLKGLEVTMPRGVLGKRHPVTLLLS 179
            P++V D+E  RC  C + FDF+ R+HHCRRC   FC  C S++ P+      DPVR C  C     KE DF D  L  L+ G    +  G   K   +T  L+
Sbjct:   35 PQWVPDKECHRCMQCDIKFDFMKRKHHCRRCGRCFCDKCCSKKVPLARMCFVDPVRHCAECSLVSQKEMDFFDKQLKVLIAGATFNVTSGESEKPEMMTCRLT 137
[Close]
BLAST of NO10G00820 vs. NCBI_GenBank
Match: XP_024117223.1 (zinc finger FYVE domain-containing protein 21 isoform X1 [Oryzias melastigma])

HSP 1 Score: 85.9 bits (211), Expect = 2.500e-13
Identity = 40/103 (38.83%), Postives = 53/103 (51.46%), Query Frame = 0 
Query:   76 PRYVMDEEIERCFGCAVAFDFVHRRHHCRRCRNIFCAACTSRERPVLLYMLTDPVRVCLRCGSEVLKENDFIDVHLHALLKGLEVTMPRGVLGKRHPVTLLLS 179
            P++V D+E  RC  C + FDF+ R+HHCRRC   FC  C S++ P+      DPVR C  C     KE DF D  L  L+ G    +  G   K   +T  L+
Sbjct:   35 PQWVPDKECHRCMQCDIKFDFMKRKHHCRRCGRCFCDKCCSKKVPLARMCFVDPVRHCAECSLVSQKEMDFFDKQLKVLIAGATFNVTSGESEKPEMMTCRLT 137
[Close]
BLAST of NO10G00820 vs. NCBI_GenBank
Match: XP_024117226.1 (zinc finger FYVE domain-containing protein 21 isoform X3 [Oryzias melastigma])

HSP 1 Score: 85.9 bits (211), Expect = 2.500e-13
Identity = 40/103 (38.83%), Postives = 53/103 (51.46%), Query Frame = 0 
Query:   76 PRYVMDEEIERCFGCAVAFDFVHRRHHCRRCRNIFCAACTSRERPVLLYMLTDPVRVCLRCGSEVLKENDFIDVHLHALLKGLEVTMPRGVLGKRHPVTLLLS 179
            P++V D+E  RC  C + FDF+ R+HHCRRC   FC  C S++ P+      DPVR C  C     KE DF D  L  L+ G    +  G   K   +T  L+
Sbjct:   35 PQWVPDKECHRCMQCDIKFDFMKRKHHCRRCGRCFCDKCCSKKVPLARMCFVDPVRHCAECSLVSQKEMDFFDKQLKVLIAGATFNVTSGESEKPEMMTCRLT 137
[Close]
BLAST of NO10G00820 vs. NCBI_GenBank
Match: NP_001185882.1 (zinc finger FYVE domain-containing protein 21 isoform 1 [Homo sapiens] >BAB71589.1 unnamed protein product [Homo sapiens] >EAW81843.1 zinc finger, FYVE domain containing 21, isoform CRA_a [Homo sapiens])

HSP 1 Score: 85.5 bits (210), Expect = 3.200e-13
Identity = 42/103 (40.78%), Postives = 53/103 (51.46%), Query Frame = 0 
Query:   76 PRYVMDEEIERCFGCAVAFDFVHRRHHCRRCRNIFCAACTSRERPVLLYMLTDPVRVCLRCGSEVLKENDFIDVHLHALLKGLEVTMPRGVLGKRHPVTLLLS 179
            P++V D+E  RC  C   FDF+ R+HHCRRC   FC  C S++ P+      DPVR C  C    LKE +F D  L  LL G    +  G   K   +T  LS
Sbjct:   39 PQWVPDKECRRCMQCDAKFDFLTRKHHCRRCGKCFCDRCCSQKVPLRRMCFVDPVRQCAECALVSLKEAEFYDKQLKVLLSGATFLVTFGNSEKPETMTCRLS 141
[Close]
BLAST of NO10G00820 vs. NCBI_GenBank
Match: XP_002825188.1 (zinc finger FYVE domain-containing protein 21 isoform X2 [Pongo abelii] >PNJ26122.1 ZFYVE21 isoform 4 [Pongo abelii])

HSP 1 Score: 85.1 bits (209), Expect = 4.200e-13
Identity = 62/202 (30.69%), Postives = 88/202 (43.56%), Query Frame = 0 
Query:   76 PRYVMDEEIERCFGCAVAFDFVHRRHHCRRCRNIFCAACTSRERPVLLYMLTDPVRVCLRCGSEVLKENDFIDVHLHALLKGLEVTMPRGVLGKRHPVTLLLSPD-----LD-----TLQVVDLPPLPXXXXXXXPRKIIKSLPLLDIGGVSEEASLSFILLTTAGSR-------FKFETSGPGQRQ--AWVCAIREAAKHL 259
            P++V D+E  RC  C   FDF+ R+HHCRRC   FC  C S++ P+      DPVR C  C     KE +F D  L  LL G    +  G   K   +T  LS +     LD      +++V +  +        P            GG +  A+  F+  T  G+           E +  G+RQ  AW+ A+ +AAK L
Sbjct:   39 PQWVPDKECRRCMQCDAKFDFLTRKHHCRRCGKCFCDRCCSQKVPLRRMCFVDPVRQCAECALVSHKEAEFYDKQLKVLLSGATFLVTFGNSEKPETMTCRLSNNQRYLFLDGDSHCEIEIVHISTVQILTEGFPP------------GGGNARATGMFLQYTVPGTEGVTQLKLTAVEDANVGRRQAVAWLVAMHKAAKLL 228
[Close]
BLAST of NO10G00820 vs. NCBI_GenBank
Match: XP_004554753.1 (zinc finger FYVE domain-containing protein 21 isoform X1 [Maylandia zebra] >XP_005728656.1 PREDICTED: zinc finger FYVE domain-containing protein 21 isoform X1 [Pundamilia nyererei] >XP_014196187.1 PREDICTED: zinc finger FYVE domain-containing protein 21 isoform X1 [Haplochromis burtoni])

HSP 1 Score: 84.7 bits (208), Expect = 5.500e-13
Identity = 41/103 (39.81%), Postives = 52/103 (50.49%), Query Frame = 0 
Query:   76 PRYVMDEEIERCFGCAVAFDFVHRRHHCRRCRNIFCAACTSRERPVLLYMLTDPVRVCLRCGSEVLKENDFIDVHLHALLKGLEVTMPRGVLGKRHPVTLLLS 179
            P++V D+E  RC  C   FDF+ R+HHCRRC   FC  C S++ P+      DPVR C  C     KE +F D  L  LL G    +  G   K   +T  LS
Sbjct:   35 PQWVPDKECPRCMQCDTKFDFIKRKHHCRRCGRCFCDKCCSKKVPLQRMCFVDPVRQCAECSLVSQKEMEFYDKQLKVLLGGGTFVVTLGTSEKSETMTCRLS 137
[Close]
BLAST of NO10G00820 vs. NCBI_GenBank
Match: XP_004554754.1 (zinc finger FYVE domain-containing protein 21 isoform X2 [Maylandia zebra] >XP_005728657.1 PREDICTED: zinc finger FYVE domain-containing protein 21 isoform X2 [Pundamilia nyererei] >XP_014196188.1 PREDICTED: zinc finger FYVE domain-containing protein 21 isoform X2 [Haplochromis burtoni])

HSP 1 Score: 84.7 bits (208), Expect = 5.500e-13
Identity = 41/103 (39.81%), Postives = 52/103 (50.49%), Query Frame = 0 
Query:   76 PRYVMDEEIERCFGCAVAFDFVHRRHHCRRCRNIFCAACTSRERPVLLYMLTDPVRVCLRCGSEVLKENDFIDVHLHALLKGLEVTMPRGVLGKRHPVTLLLS 179
            P++V D+E  RC  C   FDF+ R+HHCRRC   FC  C S++ P+      DPVR C  C     KE +F D  L  LL G    +  G   K   +T  LS
Sbjct:   35 PQWVPDKECPRCMQCDTKFDFIKRKHHCRRCGRCFCDKCCSKKVPLQRMCFVDPVRQCAECSLVSQKEMEFYDKQLKVLLGGGTFVVTLGTSEKSETMTCRLS 137
The following BLAST results are available for this feature:
BLAST of NO10G00820 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_007518419.12.500e-1340.00PREDICTED: zinc finger FYVE domain-containing prot... [more]
XP_007518420.12.500e-1340.00PREDICTED: zinc finger FYVE domain-containing prot... [more]
XP_024117227.12.500e-1338.83zinc finger FYVE domain-containing protein 21 isof... [more]
XP_024117225.12.500e-1338.83zinc finger FYVE domain-containing protein 21 isof... [more]
XP_024117223.12.500e-1338.83zinc finger FYVE domain-containing protein 21 isof... [more]
XP_024117226.12.500e-1338.83zinc finger FYVE domain-containing protein 21 isof... [more]
NP_001185882.13.200e-1340.78zinc finger FYVE domain-containing protein 21 isof... [more]
XP_002825188.14.200e-1330.69zinc finger FYVE domain-containing protein 21 isof... [more]
XP_004554753.15.500e-1339.81zinc finger FYVE domain-containing protein 21 isof... [more]
XP_004554754.15.500e-1339.81zinc finger FYVE domain-containing protein 21 isof... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL053nonsL053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR017ngnoR017Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR014ngnoR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G00820.1NO10G00820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586676gene_4138Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100281g2gene5189Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G00820.1NO10G00820.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G00820 ID=NO10G00820|Name=NO10G00820|organism=Nannochloropsis oceanica|type=gene|length=1138bp
AGGCAGCTACAGAACCGGTGCCTGGGGGTTGCGTTCATGCCACCTGCCCC
CTGGCAGCAGCAACCATGAGGAAAGCCCTGGGCAGGGTCTGCCCTTGCTT
TGGCTTCAGATTCCGAGGTCAGCAAGAACAAGGATATGACACCGTTGCCA
CCACCACATTTAAATCAACAACCGACGTCTCCTACGGCAGCATGAGCATT
CTCTCCTTCCCCAAAAGCAACAAAGGAGGCGGAGCCGCTATTTCTGCCTC
TGACTCGTCGGCAACACCTGTGCACCCTGCCATAGCATTGCCTCGTTATG
TGATGGACGAGGAAATCGAGgtagggaggctgccacagtttttttatcct
tcataagtcgcgtcttcatgtttgattttttccccactcttctttctctc
cctccctccctccctccctccatccctcctgccaaaatatcacagCGATG
CTTCGGGTGCGCCGTTGCATTTGACTTCGTCCATCGGCGTCACCACTGTC
GTCGGTGTCGAAACATCTTCTGCGCTGCCTGCACCTCTCGAGAGCGGCCC
GTCCTTCTCTACATGCTGACAGACCCCGTTCGGGTTTGCCTTCGCTGCGG
GAGTGAAGTTCTTAAAGAAAACGACTTTATCGATGTTCACCTCCACGCCC
TTCTTAAAGGCCTTGAAGTAACCATGCCCAGAGGCGTTCTTGGCAAACGA
CATCCTGTCACTCTTCTCCTCTCCCCCGACCTTGATACCCTCCAAGTCGT
TGACCTTCCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCAACCGCGGAAAA
TCATCAAATCTCTCCCTTTGCTTGACATTGGCGGCGTCTCCGAAGAAGCT
TCTCTCTCTTTCATCCTCCTCACTACGGCTGGCAGCAGGTTTAAGTTTGA
GACGAGTGGGCCAGGCCAAAGGCAAGCGTGGGTATGCGCGATCAGAGAAG
CAGCAAAGCATCTACCTCAAATGAAGGGATTGAAAAAAAGAGTGGAAGAG
GAGAGGAGGCAGAGGGAAATGCAGGAGAGGATGATGTTAGTAGAGAGACA
GGAGAAGGAAGCATTGCTGGCCAAGAAGAGGGAGAAGGCCGCGATGAGGA
ATGCGATTGCCGATAAGTACGGGCTAGCCAGGCGGTGA
back to top

protein sequence of NO10G00820.1

>NO10G00820.1-protein ID=NO10G00820.1-protein|Name=NO10G00820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=316bp
MRKALGRVCPCFGFRFRGQQEQGYDTVATTTFKSTTDVSYGSMSILSFPK
SNKGGGAAISASDSSATPVHPAIALPRYVMDEEIERCFGCAVAFDFVHRR
HHCRRCRNIFCAACTSRERPVLLYMLTDPVRVCLRCGSEVLKENDFIDVH
LHALLKGLEVTMPRGVLGKRHPVTLLLSPDLDTLQVVDLPPLPPSLPPSQ
PRKIIKSLPLLDIGGVSEEASLSFILLTTAGSRFKFETSGPGQRQAWVCA
IREAAKHLPQMKGLKKRVEEERRQREMQERMMLVERQEKEALLAKKREKA
AMRNAIADKYGLARR*
back to top
Synonyms
Publications