NO10G00820.1, NO10G00820.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G00820.1
Unique NameNO10G00820.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1013
Alignment locationchr10:267283..268420 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:267283..268420 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G00820.1 vs.
Match: EWM25320.1 (zinc fyve domain containing 21 [Nannochloropsis gaditana])

HSP 1 Score: 388.7 bits (997), Expect = 1.800e-104
Identity = 208/326 (63.80%), Postives = 251/326 (76.99%), Query Frame = 0 
Query:    1 MRKALGRVCPCFGFRFRGQQEQGYDTVATTTFKSTTDVSYGSMSILSFPKSNKGGGAAI--SASDSSATPVHPAIALPRYVMDEEIERCFGCAVAFDFVHRRHHCRRCRNIFCAACTSRERPVLLYMLTDPVRVCLRCGSEVLKENDFIDVHLHALLKGLEVTMPRG---VLGKRHPVTLLLSPDLDTLQVVDLPPLPPSLPPSQPR------KIIKSLPLLDIGGVSEEASLSFILLTTAGSRFKFETSGPGQRQAWVCAIREAAKHLPQMKGLKKRVEEERRQREMQERMMLVERQEKEALLAKKREKAAMRNAIADKYGLARR 316
            +     R+CPC  FR    + +GY+T+++ T+ S+  VS    +++   +  KGGGAA+  S+SD +A PVHPAIALPRYVMDEE+ERCF CAV FDF  RRHHCRRCRNIFCAACTSRERP+LLYML+DPVRVCLRCG+EV KEN+F+D HL  L +GLEVT+ RG   VLG+R PV+L+LS DL TLQVVDLP LP     S+P       +++   PL+DIGGVSE  SLSF++LT+ G R KFETSGPGQRQAWV AIREAA+ LP M GL+KR+EEER QR  QERM + ERQEK+ALLAKKREKAA+R+AIADKYGLARR
Sbjct:   66 LTNCFSRICPCLNFR--DWERRGYETISSGTYLSSVPVSTND-TVVPLQRIKKGGGAALTTSSSDLAAVPVHPAIALPRYVMDEEVERCFACAVPFDFAQRRHHCRRCRNIFCAACTSRERPILLYMLSDPVRVCLRCGNEVGKENEFVDRHLKGLTEGLEVTVTRGVSAVLGRRQPVSLILSADLKTLQVVDLPSLPAYHDASRPHSSHDCPRVLMHFPLVDIGGVSEVGSLSFLILTSTGVRRKFETSGPGQRQAWVAAIREAARLLPSMAGLRKRIEEERIQRATQERMAMAERQEKDALLAKKREKAAVRHAIADKYGLARR 388
The following BLAST results are available for this feature:
BLAST of NO10G00820.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25320.11.800e-10463.80zinc fyve domain containing 21 [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G00820NO10G00820Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G00820.1NO10G00820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G00820.1.cds1NO10G00820.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00820.1.cds2NO10G00820.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G00820.1 ID=NO10G00820.1|Name=NO10G00820.1|organism=Nannochloropsis oceanica|type=mRNA|length=1013bp
AGGCAGCTACAGAACCGGTGCCTGGGGGTTGCGTTCATGCCACCTGCCCC
CTGGCAGCAGCAACCATGAGGAAAGCCCTGGGCAGGGTCTGCCCTTGCTT
TGGCTTCAGATTCCGAGGTCAGCAAGAACAAGGATATGACACCGTTGCCA
CCACCACATTTAAATCAACAACCGACGTCTCCTACGGCAGCATGAGCATT
CTCTCCTTCCCCAAAAGCAACAAAGGAGGCGGAGCCGCTATTTCTGCCTC
TGACTCGTCGGCAACACCTGTGCACCCTGCCATAGCATTGCCTCGTTATG
TGATGGACGAGGAAATCGAGCGATGCTTCGGGTGCGCCGTTGCATTTGAC
TTCGTCCATCGGCGTCACCACTGTCGTCGGTGTCGAAACATCTTCTGCGC
TGCCTGCACCTCTCGAGAGCGGCCCGTCCTTCTCTACATGCTGACAGACC
CCGTTCGGGTTTGCCTTCGCTGCGGGAGTGAAGTTCTTAAAGAAAACGAC
TTTATCGATGTTCACCTCCACGCCCTTCTTAAAGGCCTTGAAGTAACCAT
GCCCAGAGGCGTTCTTGGCAAACGACATCCTGTCACTCTTCTCCTCTCCC
CCGACCTTGATACCCTCCAAGTCGTTGACCTTCCCCCCCTCCCTCCCTCC
CTCCCTCCCTCCCAACCGCGGAAAATCATCAAATCTCTCCCTTTGCTTGA
CATTGGCGGCGTCTCCGAAGAAGCTTCTCTCTCTTTCATCCTCCTCACTA
CGGCTGGCAGCAGGTTTAAGTTTGAGACGAGTGGGCCAGGCCAAAGGCAA
GCGTGGGTATGCGCGATCAGAGAAGCAGCAAAGCATCTACCTCAAATGAA
GGGATTGAAAAAAAGAGTGGAAGAGGAGAGGAGGCAGAGGGAAATGCAGG
AGAGGATGATGTTAGTAGAGAGACAGGAGAAGGAAGCATTGCTGGCCAAG
AAGAGGGAGAAGGCCGCGATGAGGAATGCGATTGCCGATAAGTACGGGCT
AGCCAGGCGGTGA
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protein sequence of NO10G00820.1

>NO10G00820.1-protein ID=NO10G00820.1-protein|Name=NO10G00820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=316bp
MRKALGRVCPCFGFRFRGQQEQGYDTVATTTFKSTTDVSYGSMSILSFPK
SNKGGGAAISASDSSATPVHPAIALPRYVMDEEIERCFGCAVAFDFVHRR
HHCRRCRNIFCAACTSRERPVLLYMLTDPVRVCLRCGSEVLKENDFIDVH
LHALLKGLEVTMPRGVLGKRHPVTLLLSPDLDTLQVVDLPPLPPSLPPSQ
PRKIIKSLPLLDIGGVSEEASLSFILLTTAGSRFKFETSGPGQRQAWVCA
IREAAKHLPQMKGLKKRVEEERRQREMQERMMLVERQEKEALLAKKREKA
AMRNAIADKYGLARR*
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mRNA from alignment at chr10:267283..268420-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G00820.1 ID=NO10G00820.1|Name=NO10G00820.1|organism=Nannochloropsis oceanica|type=mRNA|length=1138bp|location=Sequence derived from alignment at chr10:267283..268420- (Nannochloropsis oceanica)
AGGCAGCTACAGAACCGGTGCCTGGGGGTTGCGTTCATGCCACCTGCCCC
CTGGCAGCAGCAACCATGAGGAAAGCCCTGGGCAGGGTCTGCCCTTGCTT
TGGCTTCAGATTCCGAGGTCAGCAAGAACAAGGATATGACACCGTTGCCA
CCACCACATTTAAATCAACAACCGACGTCTCCTACGGCAGCATGAGCATT
CTCTCCTTCCCCAAAAGCAACAAAGGAGGCGGAGCCGCTATTTCTGCCTC
TGACTCGTCGGCAACACCTGTGCACCCTGCCATAGCATTGCCTCGTTATG
TGATGGACGAGGAAATCGAGGTAGGGAGGCTGCCACAGTTTTTTTATCCT
TCATAAGTCGCGTCTTCATGTTTGATTTTTTCCCCACTCTTCTTTCTCTC
CCTCCCTCCCTCCCTCCCTCCATCCCTCCTGCCAAAATATCACAGCGATG
CTTCGGGTGCGCCGTTGCATTTGACTTCGTCCATCGGCGTCACCACTGTC
GTCGGTGTCGAAACATCTTCTGCGCTGCCTGCACCTCTCGAGAGCGGCCC
GTCCTTCTCTACATGCTGACAGACCCCGTTCGGGTTTGCCTTCGCTGCGG
GAGTGAAGTTCTTAAAGAAAACGACTTTATCGATGTTCACCTCCACGCCC
TTCTTAAAGGCCTTGAAGTAACCATGCCCAGAGGCGTTCTTGGCAAACGA
CATCCTGTCACTCTTCTCCTCTCCCCCGACCTTGATACCCTCCAAGTCGT
TGACCTTCCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCAACCGCGGAAAA
TCATCAAATCTCTCCCTTTGCTTGACATTGGCGGCGTCTCCGAAGAAGCT
TCTCTCTCTTTCATCCTCCTCACTACGGCTGGCAGCAGGTTTAAGTTTGA
GACGAGTGGGCCAGGCCAAAGGCAAGCGTGGGTATGCGCGATCAGAGAAG
CAGCAAAGCATCTACCTCAAATGAAGGGATTGAAAAAAAGAGTGGAAGAG
GAGAGGAGGCAGAGGGAAATGCAGGAGAGGATGATGTTAGTAGAGAGACA
GGAGAAGGAAGCATTGCTGGCCAAGAAGAGGGAGAAGGCCGCGATGAGGA
ATGCGATTGCCGATAAGTACGGGCTAGCCAGGCGGTGA
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Coding sequence (CDS) from alignment at chr10:267283..268420-

>NO10G00820.1 ID=NO10G00820.1|Name=NO10G00820.1|organism=Nannochloropsis oceanica|type=CDS|length=948bp|location=Sequence derived from alignment at chr10:267283..268420- (Nannochloropsis oceanica)
ATGAGGAAAGCCCTGGGCAGGGTCTGCCCTTGCTTTGGCTTCAGATTCCG
AGGTCAGCAAGAACAAGGATATGACACCGTTGCCACCACCACATTTAAAT
CAACAACCGACGTCTCCTACGGCAGCATGAGCATTCTCTCCTTCCCCAAA
AGCAACAAAGGAGGCGGAGCCGCTATTTCTGCCTCTGACTCGTCGGCAAC
ACCTGTGCACCCTGCCATAGCATTGCCTCGTTATGTGATGGACGAGGAAA
TCGAGCGATGCTTCGGGTGCGCCGTTGCATTTGACTTCGTCCATCGGCGT
CACCACTGTCGTCGGTGTCGAAACATCTTCTGCGCTGCCTGCACCTCTCG
AGAGCGGCCCGTCCTTCTCTACATGCTGACAGACCCCGTTCGGGTTTGCC
TTCGCTGCGGGAGTGAAGTTCTTAAAGAAAACGACTTTATCGATGTTCAC
CTCCACGCCCTTCTTAAAGGCCTTGAAGTAACCATGCCCAGAGGCGTTCT
TGGCAAACGACATCCTGTCACTCTTCTCCTCTCCCCCGACCTTGATACCC
TCCAAGTCGTTGACCTTCCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCAA
CCGCGGAAAATCATCAAATCTCTCCCTTTGCTTGACATTGGCGGCGTCTC
CGAAGAAGCTTCTCTCTCTTTCATCCTCCTCACTACGGCTGGCAGCAGGT
TTAAGTTTGAGACGAGTGGGCCAGGCCAAAGGCAAGCGTGGGTATGCGCG
ATCAGAGAAGCAGCAAAGCATCTACCTCAAATGAAGGGATTGAAAAAAAG
AGTGGAAGAGGAGAGGAGGCAGAGGGAAATGCAGGAGAGGATGATGTTAG
TAGAGAGACAGGAGAAGGAAGCATTGCTGGCCAAGAAGAGGGAGAAGGCC
GCGATGAGGAATGCGATTGCCGATAAGTACGGGCTAGCCAGGCGGTGA
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Synonyms
Publications