NO10G00640, NO10G00640 (gene) Nannochloropsis oceanica

Overview
NameNO10G00640
Unique NameNO10G00640
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3070
Alignment locationchr10:214736..217805 -

Link to JBrowse

Properties
Property NameValue
DescriptionSplicing factor 3a
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:214736..217805 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO:0003723RNA binding
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005681spliceosomal complex
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR000690Znf_C2H2_matrin
IPR031776SF3A3
IPR021966SF3a60_bindingd
IPR024598DUF3449
IPR031774SF3A3_dom
Homology
BLAST of NO10G00640 vs. NCBI_GenBank
Match: EWM25297.1 (splicing factor 3a [Nannochloropsis gaditana])

HSP 1 Score: 720.7 bits (1859), Expect = 3.500e-204
Identity = 432/556 (77.70%), Postives = 473/556 (85.07%), Query Frame = 0
Query:    1 MSGMTLERARASHEDIEAYEAAIVAILEDKPRTNKERIWQQNRVANLIGQIQARSQDLLNIYLDKHGVMKEEVASLRGRDAFPTFYSRLDAAKEYHQKHPNLPVKHHPAVQEEAEPRLSFSGEEVWGKYLDLQALHMEFYSMPQTPKWDYQMYLEKFTDFSAVPSGKKNAAWARYVKNLYDYLFSFIQRTQPLLNIEDVVGGEGXXXXXXXXXXXXXXXXXFEALWQAGELPSGWPKPSTAGEGGREEGXXXKEEARPVDLSKFRAAEDVEVLGMERLKEGLVALGLKCGGTLKERATRLFSTKGKRKEDIDKKLWAGVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKQCAWVEYKIGLLVGEVLGEVIEATRKFVEKKQT--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPIYNPLNLPLGYDGKPIPYWLYKLHGLGVEYKCEICGNHSYWGRRAFDRHFQEWRHAHGMRCLMVPNTKHFHDITTIKDALALYGRIKEQLKGEVYDAEVEEEFEDSEGNVLNRRTFQDLARQGLL 555
            MSG+TLERARA+HEDIEAYEAAIVAILEDKPRT KER+WQQ+RV+NLI QIQ RS+DL  IY D HG MKEE+A+LRGRDAFP+FY+R+D AKEYHQKHP++PVKHHP VQEEAEPR+SFSGEEV+GKYLDLQA HMEFY++PQTPKWDYQ YL +  DFS VP+GKKNAAWARYV NLY+YL SFIQRTQPLLN+E+++ G                   FEALWQAG+LP GWP P  A  GG E+G    E  + VDL  FR A+++EVLGM+RLK GL ALG+KCGGTL+ERA RLF+TKGK+KE+ID KL AG  XXXXXXXXXXXXXXXXXXXXXXXX           KKQCA  E++I LLV EVL EV+EAT+KFVEKKQT  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PIYNPLNLPLGYDGKPIPYWLYKLHGLGVEYKCEICGNHSYWGRRAFDRHFQEWRHAHGMRCL +PNTKHFHDITTIKDALALY RIKEQLKGEVYDAEVEEEFEDSEGNVLNRRTFQDLARQGLL
Sbjct:    1 MSGLTLERARANHEDIEAYEAAIVAILEDKPRTAKERVWQQHRVSNLIEQIQGRSKDLEGIYEDVHGTMKEELATLRGRDAFPSFYARVDHAKEYHQKHPDVPVKHHPPVQEEAEPRVSFSGEEVFGKYLDLQASHMEFYALPQTPKWDYQTYLSRLADFSVVPAGKKNAAWARYVHNLYNYLLSFIQRTQPLLNVEEILDGN---VDGGEEGATKKAEAAFEALWQAGKLPGGWPVP--AQGGGEEKG---AENTKEVDLRGFRTAKELEVLGMDRLKAGLKALGMKCGGTLEERAARLFATKGKKKEEIDPKLLAG--XXXXXXXXXXXXXXXXXXXXXXXXDKEGGKGGEDGKKQCARWEFRIDLLVKEVLREVVEATKKFVEKKQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPIYNPLNLPLGYDGKPIPYWLYKLHGLGVEYKCEICGNHSYWGRRAFDRHFQEWRHAHGMRCLKIPNTKHFHDITTIKDALALYDRIKEQLKGEVYDAEVEEEFEDSEGNVLNRRTFQDLARQGLL 546          
BLAST of NO10G00640 vs. NCBI_GenBank
Match: XP_005853408.1 (splicing factor 3A subunit 3 [Nannochloropsis gaditana CCMP526] >EKU22951.1 splicing factor 3A subunit 3 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 720.3 bits (1858), Expect = 4.500e-204
Identity = 432/556 (77.70%), Postives = 473/556 (85.07%), Query Frame = 0
Query:    1 MSGMTLERARASHEDIEAYEAAIVAILEDKPRTNKERIWQQNRVANLIGQIQARSQDLLNIYLDKHGVMKEEVASLRGRDAFPTFYSRLDAAKEYHQKHPNLPVKHHPAVQEEAEPRLSFSGEEVWGKYLDLQALHMEFYSMPQTPKWDYQMYLEKFTDFSAVPSGKKNAAWARYVKNLYDYLFSFIQRTQPLLNIEDVVGGEGXXXXXXXXXXXXXXXXXFEALWQAGELPSGWPKPSTAGEGGREEGXXXKEEARPVDLSKFRAAEDVEVLGMERLKEGLVALGLKCGGTLKERATRLFSTKGKRKEDIDKKLWAGVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKQCAWVEYKIGLLVGEVLGEVIEATRKFVEKKQT--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPIYNPLNLPLGYDGKPIPYWLYKLHGLGVEYKCEICGNHSYWGRRAFDRHFQEWRHAHGMRCLMVPNTKHFHDITTIKDALALYGRIKEQLKGEVYDAEVEEEFEDSEGNVLNRRTFQDLARQGLL 555
            MSG+TLERARA+HEDIEAYEAAIVAILEDKPRT KER+WQQ+RV+NLI QIQ RS+DL  IY D HG MKEE+A+LRGRDAFP+FY+R+D AKEYHQKHP++PVKHHP VQEEAEPR+SFSGEEV+GKYLDLQA HMEFY++PQTPKWDYQ YL +  DFS VP+GKKNAAWARYV NLY+YL SFIQRTQPLLN+E+++ G                   FEALWQAG+LP GWP P  A  GG E+G    E  + VDL  FR A+++EVLGM+RLK GL ALG+KCGGTL+ERA RLF+TKGK+KE+ID KL AG  XXXXXXXXXXXXXXXXXXXXXXXX           KKQCA  E++I LLV EVL EV+EAT+KFVEKKQT  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PIYNPLNLPLGYDGKPIPYWLYKLHGLGVEYKCEICGNHSYWGRRAFDRHFQEWRHAHGMRCL +PNTKHFHDITTIKDALALY RIKEQLKGEVYDAEVEEEFEDSEGNVLNRRTFQDLARQGLL
Sbjct:    1 MSGLTLERARANHEDIEAYEAAIVAILEDKPRTAKERVWQQHRVSNLIEQIQGRSKDLEGIYEDVHGTMKEELATLRGRDAFPSFYARVDHAKEYHQKHPDVPVKHHPPVQEEAEPRVSFSGEEVFGKYLDLQASHMEFYALPQTPKWDYQTYLSRLADFSVVPAGKKNAAWARYVHNLYNYLHSFIQRTQPLLNVEEILDGN---VDGGEEGATKKAEAAFEALWQAGKLPGGWPVP--AQGGGEEKG---AENTKEVDLRGFRTAKELEVLGMDRLKAGLKALGMKCGGTLEERAARLFATKGKKKEEIDPKLLAG--XXXXXXXXXXXXXXXXXXXXXXXXDKEGGKGGEDGKKQCARWEFRIDLLVKEVLREVVEATKKFVEKKQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPIYNPLNLPLGYDGKPIPYWLYKLHGLGVEYKCEICGNHSYWGRRAFDRHFQEWRHAHGMRCLKIPNTKHFHDITTIKDALALYDRIKEQLKGEVYDAEVEEEFEDSEGNVLNRRTFQDLARQGLL 546          
BLAST of NO10G00640 vs. NCBI_GenBank
Match: CBJ31751.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 419.1 bits (1076), Expect = 2.200e-113
Identity = 315/562 (56.05%), Postives = 387/562 (68.86%), Query Frame = 0
Query:    1 MSGMTLERARASHEDIEAYEAAIVAILEDKPRTNKERIWQQNRVANLIGQIQARSQDLLNIYLDKHGVMKEEVASLRGRDAFPTFYSRLDAAKEYHQKHPNLPVKHHPAVQEEAEPRLSFSGEEVWGKYLDLQALHMEFYSMPQ--TPKWDYQMYLEKFTDFSAVPSGKK--NAAWARYVKNLYDYLFSFIQRTQPLLNIEDVVGGEGXXXXXXXXXXXXXXXXXFEALWQAGELPSGWP--KPSTAGEGGREEGXXXKEEARPVDLSKFRAAEDVEVLGMERLKEGLVALGLKCGGTLKERATRLFSTKGKRKEDIDKK--LWAGVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKQCAWVEYKIGLLVGEVLGEVIEATRKFVEKKQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPIYNPLNLPLGYDGKPIPYWLYKLHGLGVEYKCEICGNHSYWGRRAFDRHFQEWRHAHGMRCLMVPNTKHFHDITTIKDALALYGRIKEQLKGEVYDAEVEEEFEDSEGNVLNRRTFQDLARQGLL 555
            MS   LERAR  HED+E YE  I+  LE KPRT KER+ QQ+R+ANL      RSQ L  IY D  G M+EEVAS+RG+    TFY RL     YH  HP LPV   P ++ E E ++ FSGEE++GK+ DL  + + + ++PQ    + DY  +L+    F  +P  +K    A+A ++ +L +YL  F+ RTQPL+++++V+G                    FE  W+AG LP GW   +            XXX    R +DL KF  A+++  LGM+RLKE L A+GLKCGGTL++RA RLFS KGK+ E+ID+K        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  Q A +E K+  L+ EV  + +E+T++ V+K     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX IYNPLNLPLG+DGKPIPYWLYKLHGLGVE+KCEICG+ SY GRR FDRHFQEWRHAHGMRCL +PNTKHFHDI  I+DA  LY +IK+ L  E ++ E  EE+ED EGNVLNRRT++DLARQGL+
Sbjct:    1 MSSSLLERARGFHEDLEIYERGIIDQLETKPRTQKERVAQQHRIANLCDGSTERSQGLHEIYEDTDGSMREEVASMRGQKVMDTFYDRLKETWSYHTHHPGLPVTFGPNLEAETEVKVQFSGEELYGKFFDLHGMFVRWVNLPQCKDKQLDYSQFLQALGRFEDIPEQEKLRGKAYAGFLADLREYLGGFLTRTQPLVDLDEVLG---------------DTDSSFEEAWEAGTLP-GWTSGRXXXXXXXXXXXXXXXXXXPRVLDLKKFHDADELRALGMDRLKEALQAIGLKCGGTLEQRADRLFSVKGKKPEEIDQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLAALETKVKALL-EVQTDTLESTKRQVDK-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIVLIQDARDLYAKIKDSLDKEQWNPEDNEEYEDGEGNVLNRRTYEDLARQGLM 540          
BLAST of NO10G00640 vs. NCBI_GenBank
Match: OQR92055.1 (splicing factor 3A [Achlya hypogyna])

HSP 1 Score: 367.5 bits (942), Expect = 7.500e-98
Identity = 224/584 (38.36%), Postives = 297/584 (50.86%), Query Frame = 0
Query:    1 MSGMTLERARASHEDIEAYEAAIVAILEDKPRTNKERIWQQNRVANLIGQIQARSQDLLNIYLDKHGVMKEEVASLRGRDAFPTFYSRLDAAKEYHQKHPNLPVKHHPAVQEEA-EPRLSFSGEEVWGKYLDLQALHMEFYSMP-------------------QTPKW-----DYQMYLEKFTDFSAVPSGKK--NAAWARYVKNLYDYLFSFIQRTQPLLNIEDVVGGEGXXXXXXXXXXXXXXXXXFEALWQAGELPSGWPKPSTAGEGGREEGXXXKEEARPVDLSKFRAAEDVEVLGMERLKEGLVALGLKCGGTLKERATRLFST---KGKRKEDIDKKLWAGVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKQCAWVEYKIGLLVGEVLGEVIEATRKFVEKKQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPIYNPLNLPLGYDGKPIPYWLYKLHGLGVEYKCEICGNHSYWGRRAFDRHFQEWRHAHGMRCLMVPNTKHFHDITTIKDALALYGRIKEQLKGEVYDAEVEEEFEDSEGNVLNRRTFQDLARQGLL 555
            MS  TLE  RA HEDIE++E AIV+IL +KPR +K R+   ++V+ L+  + ARS+D+L +Y DK G  K+EV +L GR  F +FY  L   +E+H+K+PN+ V H P+  E A +P + FSGEE +GKY+DL A H +F ++P                   +TP++     DY  YL +F + + +P   K  ++ +  Y+  L  YL  F +RTQPL++++DVV                     FE  W  G++    P   T                                                C    K+ A+    T   KGK+      +L AG                                     +K  A +E  +  L+G +L EV+ AT  F+E KQT                                      P YNPLNLPLG+DGKPIPYWLYKLHGLGVE+KCEICGNHSYWGRR FDRHFQ+WRHAHGMRCL +PNTKHFHDIT++ DALALY ++KEQL+ E ++   EEEFEDSEGNVLN++T+QDLARQGLL
Sbjct:    1 MSSSTLELLRAGHEDIESFERAIVSILNEKPRNHKARVLHGHKVSQLLDNVTARSRDVLELYEDKEGAFKDEVDALHGRANFTSFYDHLKNIREFHRKYPNVEVIHEPSSLEAAMDPTVEFSGEERFGKYVDLHAYHTQFLNLPVFASVNKMKTADTTKMQRGRTPEYIDAPVDYITYLSRFGNLAKIPEAAKFVDSRYETYLTELRAYLTDFYRRTQPLVDLDDVVN---------------EAQAQFEKSWALGQVKGWAPAADTTA-------------------------------------------STYCKACQKQFASEAVFTGHLKGKKHLKAAAQLAAG-------------------------------GPAPDVRKALANLEVHVKTLIG-LLTEVVHATISFLELKQT----RTPEELQAEILEEEDDALSDVEIDNDNVDDDDEQPFYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGNHSYWGRRDFDRHFQQWRHAHGMRCLGIPNTKHFHDITSMADALALYEKLKEQLEKETWNKANEEEFEDSEGNVLNKKTYQDLARQGLL 490          
BLAST of NO10G00640 vs. NCBI_GenBank
Match: PIA54849.1 (hypothetical protein AQUCO_00901027v1 [Aquilegia coerulea])

HSP 1 Score: 363.2 bits (931), Expect = 1.400e-96
Identity = 239/563 (42.45%), Postives = 321/563 (57.02%), Query Frame = 0
Query:    1 MSGMTLERARASHEDIEAYEAAIVAILEDKPRTNKERIWQQNRVANLIGQIQARSQDLLNIYLDKHGVMKEEVASL-----RGRDAFPTFYSRLDAAKEYHQKHPNLPVKHHPAVQEE---AEPRLSFSGEEVWGKYLDLQALHMEFYSMPQTPKWDYQMYLEKFTDFSAVPSG-KKNAAWARYVKNLYDYLFSFIQRTQPLLNIEDVVGGEGXXXXXXXXXXXXXXXXXFEALWQAGELPSGWPKPSTAGEGGREEGXXXKEEARPVDLSKFRAAEDVEVLGMERLKEGLVALGLKCGGTLKERATRLFSTKGKRKEDIDKKLWAGVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKQCAWVEYKIGLLVGEVLGEVIEATRKFVEKKQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPIYNPLNLPLGYDGKPIPYWLYKLHGLGVEYKCEICGNHSYWGRRAFDRHFQEWRHAHGMRCLMVPNTKHFHDITTIKDALALYGRIKEQLKGEVYDAEVEEEFEDSEGNVLNRRTFQDLARQGLL 555
            MS   LE  RASHE+IE +E  IV  L+ +P T++ER+ Q +RV  +I  I + +Q L+ IY D     K+E+A+L     +G + F  FY RL   +EYH++HPN  V       EE    EP + FSGEE  GKYLD+  L+ E+ +       +Y +YL+ F+  + VP   K    +  Y+++L DYL  F QR +PL +++ +                      FE LW  G++  GW           E G     ++  VDL  +   E++  +G E+LKEGL ALGLK GGT+K+RA RLF TK      +DKK +A                                       +Q A +E K+  +  E+L E I  T++ VEKKQ                   XXXXXXXXXXXXXXXXXXXX IYNPL LP+G+DGKPIPYWLYKLHGLG E+KCEICGNHSYWGRRAF+RHF+EWRH HGMRCL +PNTK+F++IT+I++A AL+GRI+E+     +  ++EEE+ED EGN+ N++TF DL RQGL+
Sbjct:    1 MSSTLLEVTRASHEEIERFERLIVKDLQKEPSTSRERLSQNHRVRTMIDTITSTTQKLVEIYEDNDNARKDEIAALGGQTEKGTNVFNAFYDRLKEIREYHRRHPNARVIDASEEYEELLKEEPHIEFSGEEGHGKYLDMHELYNEYINSKFGKHIEYSVYLDVFSQPNHVPRNLKLTRTYREYLEHLLDYLIHFFQRIEPLQDLDRIFS---------------KVETEFEELWADGKI-EGWKNKVL------ENGHIPSNDS-VVDLDYYSTVEELMEVGPEKLKEGLAALGLKTGGTVKQRAERLFLTKHTPLAKLDKKHFA------------------KGSRDVGLNGASDASQQTDDVRQIALMETKLKRIC-ELLSETILQTKENVEKKQA------------LTYEEMXXXXXXXXXXXXXXXXXXXXQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNHSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKALWGRIQERQGVNKWRPDLEEEYEDKEGNIYNKKTFTDLQRQGLI 509          
BLAST of NO10G00640 vs. NCBI_GenBank
Match: XP_012195042.1 (hypothetical protein SPRG_01439 [Saprolegnia parasitica CBS 223.65] >KDO34251.1 hypothetical protein SPRG_01439 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 359.8 bits (922), Expect = 1.600e-95
Identity = 222/581 (38.21%), Postives = 298/581 (51.29%), Query Frame = 0
Query:    1 MSGMTLERARASHEDIEAYEAAIVAILEDKPRTNKERIWQQNRVANLIGQIQARSQDLLNIYLDKHGVMKEEVASLRGRDAFPTFYSRLDAAKEYHQKHPNLPVKHHPAVQEEA-EPRLSFSGEEVWGKYLDLQALHMEFYSMP-------------------QTPKW-----DYQMYLEKFTDFSAVPSGKK--NAAWARYVKNLYDYLFSFIQRTQPLLNIEDVVGGEGXXXXXXXXXXXXXXXXXFEALWQAGELPSGWPKPSTAGEGGREEGXXXKEEARPVDLSKFRAAEDVEVLGMERLKEGLVALGLKCGGTLKERATRLFSTKGKRKEDIDKKLWAGVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKQCAWVEYKIGLLVGEVLGEVIEATRKFVEKKQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPIYNPLNLPLGYDGKPIPYWLYKLHGLGVEYKCEICGNHSYWGRRAFDRHFQEWRHAHGMRCLMVPNTKHFHDITTIKDALALYGRIKEQLKGEVYDAEVEEEFEDSEGNVLNRRTFQDLARQGLL 555
            MS  TLE  RA HEDIE++E AIV+IL +KPR +K R+   ++V+ L+  + ARS+++L++Y DK G  KEE+ +L GR  F +FY +L   +E+H+K+PN+ V H P+  + A +P + FSGEE +GKYLDL A H +F ++P                   +TP++     DY  YL +F  F  +P   K  +  +  Y+ +L  YL  F +RTQPL++++DVV                     FE  W A     GW                    +        + A D    G  + K+      +K    LK+R        G+   D                                             +K  A +E +I  LVG +L EV+ AT  F+E KQT                                      P YNPLNLPLG+DGKPIPYWLYKLHGLGVE+ CEICGNHSYWGRR FDRHFQ+WRHAHGMRCL +PNTKHFHDIT++ DALALY ++KEQL+ E +    EEE+EDSEGNVLN++T++DL+RQGLL
Sbjct:    1 MSSSTLELLRAGHEDIESFERAIVSILNEKPRNHKARVLHGHKVSQLLDNVTARSREVLDLYDDKEGAFKEEIDTLHGRANFTSFYDQLKNIREFHRKYPNVEVSHEPSSLDAAMDPTVEFSGEERFGKYLDLHAFHTQFLNLPVFASVNKMKTADTSKVQRGRTPEYIDAPVDYISYLGRFAQFHKIPEAAKLSDTRYEAYLNDLLAYLKDFYRRTQPLVDLDDVVN---------------DAQTQFEKDW-ARHTVQGWATSVNT------------SSSTYCKACNKQFASDAVFNGHLKGKK-----HIKAAEQLKQR-----EATGEPAND--------------------------------------------SRKGLAHLEAQIKTLVG-LLAEVVHATISFLELKQT----RTPEELQAEILEEEDDALSDVEIDNDKVDDDDEQPFYNPLNLPLGWDGKPIPYWLYKLHGLGVEFTCEICGNHSYWGRRDFDRHFQQWRHAHGMRCLGIPNTKHFHDITSMADALALYEKLKEQLEKETWSKANEEEYEDSEGNVLNKKTYEDLSRQGLL 494          
BLAST of NO10G00640 vs. NCBI_GenBank
Match: XP_008611950.1 (hypothetical protein SDRG_07871 [Saprolegnia diclina VS20] >EQC34544.1 hypothetical protein SDRG_07871 [Saprolegnia diclina VS20])

HSP 1 Score: 358.6 bits (919), Expect = 3.500e-95
Identity = 223/581 (38.38%), Postives = 297/581 (51.12%), Query Frame = 0
Query:    1 MSGMTLERARASHEDIEAYEAAIVAILEDKPRTNKERIWQQNRVANLIGQIQARSQDLLNIYLDKHGVMKEEVASLRGRDAFPTFYSRLDAAKEYHQKHPNLPVKHHPAVQEEA-EPRLSFSGEEVWGKYLDLQALHMEFYSMP-------------------QTPKW-----DYQMYLEKFTDFSAVPSGKK--NAAWARYVKNLYDYLFSFIQRTQPLLNIEDVVGGEGXXXXXXXXXXXXXXXXXFEALWQAGELPSGWPKPSTAGEGGREEGXXXKEEARPVDLSKFRAAEDVEVLGMERLKEGLVALGLKCGGTLKERATRLFSTKGKRKEDIDKKLWAGVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKQCAWVEYKIGLLVGEVLGEVIEATRKFVEKKQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPIYNPLNLPLGYDGKPIPYWLYKLHGLGVEYKCEICGNHSYWGRRAFDRHFQEWRHAHGMRCLMVPNTKHFHDITTIKDALALYGRIKEQLKGEVYDAEVEEEFEDSEGNVLNRRTFQDLARQGLL 555
            MS  TLE  RA HEDIE++E AIV+IL +KPR +K R+   ++V+ L+  + ARS+++L++Y DK G  KEE+ +L GR  F +FY +L   +E+H+K+P + V H P+  + A +P + FSGEE +GKYLDL A H +F ++P                   +TP++     DY  YL +F  F  +P   K  +  +  Y+ +L  YL  F +RTQPL++++DVV                     FE  W A     GW                    A        + A D    G  + K+      +K    LK+R        G+   D                                             +K  A +E +I  LVG +L EV+ AT  F+E KQT                                      P YNPLNLPLG+DGKPIPYWLYKLHGLGVE+ CEICGNHSYWGRR FDRHFQ+WRHAHGMRCL +PNTKHFHDIT++ DALALY ++KEQL+ E +    EEEFEDSEGNVLN++T++DL+RQGLL
Sbjct:    1 MSSSTLELLRAGHEDIESFERAIVSILNEKPRNHKARVLHGHKVSQLLDNVTARSREVLDLYDDKEGAFKEEIDTLHGRANFTSFYDQLKNIREFHRKYPTVEVSHEPSSLDAAMDPTVEFSGEERFGKYLDLHAFHTQFLNLPVFASVNKMKTADTTKVQRGRTPEYIDAPVDYISYLGRFAQFHKIPEAAKLSDTRYEAYLNDLLAYLKDFYRRTQPLVDLDDVV---------------LDAQTQFEKDW-ARHTVQGWATSLNT------------SSATYCKACNKQFASDAVFNGHLKGKK-----HIKAAEQLKQR-----EATGEPASD--------------------------------------------SRKGLAHLEAQIRTLVG-LLTEVVHATISFLELKQT----RTPEELQAEILEEEDDALSDVEVDNDKVDDDDEQPFYNPLNLPLGWDGKPIPYWLYKLHGLGVEFTCEICGNHSYWGRRDFDRHFQQWRHAHGMRCLGIPNTKHFHDITSMADALALYEKLKEQLEKETWSKANEEEFEDSEGNVLNKKTYEDLSRQGLL 494          
BLAST of NO10G00640 vs. NCBI_GenBank
Match: XP_011012040.1 (PREDICTED: splicing factor 3A subunit 3-like [Populus euphratica])

HSP 1 Score: 356.3 bits (913), Expect = 1.700e-94
Identity = 233/564 (41.31%), Postives = 324/564 (57.45%), Query Frame = 0
Query:    1 MSGMTLERARASHEDIEAYEAAIVAILEDKPRTNKERIWQQNRVANLIGQIQARSQDLLNIYLDKHGVMKEEVASLRGRDA-----FPTFYSRLDAAKEYHQKHPNLPV----KHHPAVQEEAEPRLSFSGEEVWGKYLDLQALHMEFYSMPQTPKWDYQMYLEKFTDFSAVPSGKK-NAAWARYVKNLYDYLFSFIQRTQPLLNIEDVVGGEGXXXXXXXXXXXXXXXXXFEALWQAGELPSGWPKPSTAGEGGREEGXXXKEEARPVDLSKFRAAEDVEVLGMERLKEGLVALGLKCGGTLKERATRLFSTKGKRKEDIDKKLWAGVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKQCAWVEYKIGLLVGEVLGEVIEATRKFVEKKQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPIYNPLNLPLGYDGKPIPYWLYKLHGLGVEYKCEICGNHSYWGRRAFDRHFQEWRHAHGMRCLMVPNTKHFHDITTIKDALALYGRIKEQLKGEVYDAEVEEEFEDSEGNVLNRRTFQDLARQGLL 555
            MS   LE  RASHE++E  E  IV  L+++P  NK+R++Q +RV N+I  I   ++ L+ IY DK    ++E+A+L G+ A     F  FY RL   +EYH++HP   V    + + A+ +E EP + F+GEE +GKYLD+  L+ ++ ++      +Y  YL+ F+  + VP   K +  +  Y++NL +YL  F QRT+PL +++ +                      FE  W+  +   GW K S      RE G    +    +DL  +   E+++ +G E+LKE L ALGLK GGTL++RA RLF TK    E +DKK +                                        K+ A +E KI  L  ++L E I  T++ V KKQ                    XXXXXXXXXXXXXXXXXXX IYNPL LP+G+DGKPIPYWLYKLHGLG E+KCEICGN+SYWGRRAF+RHF+EWRH HGMRCL +PNTK+F++IT+IK+A  L+ RI+E+     +  ++EEE+ED EGN+ NR+T+ DL RQGL+
Sbjct:    1 MSSTLLEMTRASHEEVERLERLIVKDLQNEPANNKDRLFQSHRVRNMIDNIITTTEKLVEIYEDKDNARRDEIAALGGQTAMGTNVFSAFYDRLKEIREYHRRHPAARVVDANEDYEAMLKE-EPVIEFTGEEAFGKYLDMHELYNQYNNLKFEKPIEYSTYLDIFSQPNIVPRKLKFSRQYREYMENLLEYLVYFFQRTEPLQDLDRIFS---------------KVTTEFEEQWE-NDAVQGWEKTS------RENGHLSADHT-VIDLDFYSTVEELKEVGPEKLKEALAALGLKSGGTLQQRAERLFLTKDTPLEKLDKKHFV------------------KGSRGSEPNGGAATSKEVDNSKEIALMEAKINKLC-DLLDETIVRTKENVVKKQA------------LTYDEMEXXXXXXXXXXXXXXXXXXXQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIKEAQELWKRIQERQGVNKWRPDLEEEYEDKEGNIYNRKTYTDLQRQGLI 509          
BLAST of NO10G00640 vs. NCBI_GenBank
Match: XP_011012255.1 (PREDICTED: splicing factor 3A subunit 3-like [Populus euphratica])

HSP 1 Score: 356.3 bits (913), Expect = 1.700e-94
Identity = 233/564 (41.31%), Postives = 324/564 (57.45%), Query Frame = 0
Query:    1 MSGMTLERARASHEDIEAYEAAIVAILEDKPRTNKERIWQQNRVANLIGQIQARSQDLLNIYLDKHGVMKEEVASLRGRDA-----FPTFYSRLDAAKEYHQKHPNLPV----KHHPAVQEEAEPRLSFSGEEVWGKYLDLQALHMEFYSMPQTPKWDYQMYLEKFTDFSAVPSGKK-NAAWARYVKNLYDYLFSFIQRTQPLLNIEDVVGGEGXXXXXXXXXXXXXXXXXFEALWQAGELPSGWPKPSTAGEGGREEGXXXKEEARPVDLSKFRAAEDVEVLGMERLKEGLVALGLKCGGTLKERATRLFSTKGKRKEDIDKKLWAGVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKQCAWVEYKIGLLVGEVLGEVIEATRKFVEKKQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPIYNPLNLPLGYDGKPIPYWLYKLHGLGVEYKCEICGNHSYWGRRAFDRHFQEWRHAHGMRCLMVPNTKHFHDITTIKDALALYGRIKEQLKGEVYDAEVEEEFEDSEGNVLNRRTFQDLARQGLL 555
            MS   LE  RASHE++E  E  IV  L+++P  NK+R++Q +RV N+I  I   ++ L+ IY DK    ++E+A+L G+ A     F  FY RL   +EYH++HP   V    + + A+ +E EP + F+GEE +GKYLD+  L+ ++ ++      +Y  YL+ F+  + VP   K +  +  Y++NL +YL  F QRT+PL +++ +                      FE  W+  +   GW K S      RE G    +    +DL  +   E+++ +G E+LKE L ALGLK GGTL++RA RLF TK    E +DKK +                                        K+ A +E KI  L  ++L E I  T++ V KKQ                    XXXXXXXXXXXXXXXXXXX IYNPL LP+G+DGKPIPYWLYKLHGLG E+KCEICGN+SYWGRRAF+RHF+EWRH HGMRCL +PNTK+F++IT+IK+A  L+ RI+E+     +  ++EEE+ED EGN+ NR+T+ DL RQGL+
Sbjct:    1 MSSTLLEMTRASHEEVERLERLIVKDLQNEPANNKDRLFQSHRVRNMIDNIITTTEKLVEIYEDKDNARRDEIAALGGQTAMGTNVFSAFYDRLKEIREYHRRHPAARVVDANEDYEAMLKE-EPVIEFTGEEAFGKYLDMHELYNQYNNLKFEKPIEYSTYLDIFSQPNIVPRKLKFSRQYREYMENLLEYLVYFFQRTEPLQDLDRIFS---------------KVTTEFEEQWE-NDTVQGWEKTS------RENGHLSADHT-VIDLDFYSTVEELKEVGPEKLKEALAALGLKSGGTLQQRAERLFLTKDTPLEKLDKKHFV------------------KGSRGSEPNGGAATSKEVDNSKEIALMEAKINKLC-DLLDETIVRTKENVVKKQA------------LTYDEMEXXXXXXXXXXXXXXXXXXXQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIKEAQELWKRIQERQGVNKWRPDLEEEYEDKEGNIYNRKTYTDLQRQGLI 509          
BLAST of NO10G00640 vs. NCBI_GenBank
Match: XP_022736047.1 (splicing factor SF3a60 homolog [Durio zibethinus])

HSP 1 Score: 356.3 bits (913), Expect = 1.700e-94
Identity = 237/564 (42.02%), Postives = 323/564 (57.27%), Query Frame = 0
Query:    1 MSGMTLERARASHEDIEAYEAAIVAILEDKPRTNKERIWQQNRVANLIGQIQARSQDLLNIYLDKHGVMKEEVASLRGRDA-----FPTFYSRLDAAKEYHQKHPNLPV----KHHPAVQEEAEPRLSFSGEEVWGKYLDLQALHMEFYSMPQTPKWDYQMYLEKFTDFSAVP-SGKKNAAWARYVKNLYDYLFSFIQRTQPLLNIEDVVGGEGXXXXXXXXXXXXXXXXXFEALWQAGELPSGWPKPSTAGEGGREEGXXXKEEARPVDLSKFRAAEDVEVLGMERLKEGLVALGLKCGGTLKERATRLFSTKGKRKEDIDKKLWAGVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKQCAWVEYKIGLLVGEVLGEVIEATRKFVEKKQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPIYNPLNLPLGYDGKPIPYWLYKLHGLGVEYKCEICGNHSYWGRRAFDRHFQEWRHAHGMRCLMVPNTKHFHDITTIKDALALYGRIKEQLKGEVYDAEVEEEFEDSEGNVLNRRTFQDLARQGLL 555
            MS   LE  RA+HED+E  E  IV  L+++P T K+R++Q +RV N I  I A ++ L+ IY DK    K+E+A+L G+ A     F  FY RL   +EYH+KHP   V    +   A+ +E EP + FSGEE  G+YLDL  L  ++ +     K +Y  YL+ F+    +P   K    +  Y++NL +YL  F QRT+PL +++ +                      FE  W  G++  GW K       G+E G    ++A  +DL  +   E++  +G E+LKE L ALGLK GGT+++RA RLF TK    E +DKK +A                                       K  A +E K+  L  ++L + IE T++ V KKQ                   XXXXXXXXXXXXXXXXXXXX IYNPL LP+G+DGKPIPYWLYKLHGLG E+KCEICGN+SYWGRRAF+RHF+EWRH HGMRCL +PNTK+F++IT I++A  L+GRI+E+     +  ++EEE+ED EGN+ N++T+ DL RQGL+
Sbjct:    1 MSSTLLEVTRAAHEDVERLERLIVKDLQNEPPTGKDRLYQSHRVRNNIDTIIATTEKLIEIYEDKDNARKDEIAALGGQTATGINVFSAFYDRLKEIREYHRKHPAARVVDANEEFEALLKE-EPVIEFSGEEALGRYLDLHELFNQYINSKFGAKIEYSAYLDVFSQPHNIPWKLKSTRQYREYMENLLEYLIYFFQRTEPLQDLDRIFS---------------KVEAEFEEQWADGQV-QGWEKQ------GQENGDDPAQDA-VIDLDYYSTVEELMEVGPEKLKEALAALGLKTGGTVQQRAERLFLTKHTPLEKLDKKHFA------------------KGSRGPEQNGSTVVPQDINNLKDVASIEAKMKKLC-DLLSKTIEQTKENVVKKQA------------LTYEEMXXXXXXXXXXXXXXXXXXXXQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITNIEEAKELWGRIQERQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI 509          
The following BLAST results are available for this feature:
BLAST of NO10G00640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25297.13.500e-20477.70splicing factor 3a [Nannochloropsis gaditana][more]
XP_005853408.14.500e-20477.70splicing factor 3A subunit 3 [Nannochloropsis gadi... [more]
CBJ31751.12.200e-11356.05conserved unknown protein [Ectocarpus siliculosus][more]
OQR92055.17.500e-9838.36splicing factor 3A [Achlya hypogyna][more]
PIA54849.11.400e-9642.45hypothetical protein AQUCO_00901027v1 [Aquilegia c... [more]
XP_012195042.11.600e-9538.21hypothetical protein SPRG_01439 [Saprolegnia paras... [more]
XP_008611950.13.500e-9538.38hypothetical protein SDRG_07871 [Saprolegnia dicli... [more]
XP_011012040.11.700e-9441.31PREDICTED: splicing factor 3A subunit 3-like [Popu... [more]
XP_011012255.11.700e-9441.31PREDICTED: splicing factor 3A subunit 3-like [Popu... [more]
XP_022736047.11.700e-9442.02splicing factor SF3a60 homolog [Durio zibethinus][more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL053nonsL053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR017ngnoR017Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000920NSK000920Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G00640.2NO10G00640.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO10G00640.1NO10G00640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|425646gene_4155Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100240g2gene5210Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G00640.2NO10G00640.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO10G00640.1NO10G00640.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G00640 ID=NO10G00640|Name=NO10G00640|organism=Nannochloropsis oceanica|type=gene|length=3070bp
CCCCCATCAGGCCGGCACAATAAATTTAATCTGGCAAACTACATTGTCGC
AGTGTCTGTGTACTGTTGTGTGTTGGCAATTTTGAAATAAGGTGTGGCAG
TAGGACAATTCGATTGTTTGCCCATTCTCAAACTGGGCGAGCACGCTGGC
GAGTTCTTGGCTTGTCGGCGTCTCCGAGATGACGATGGTGAGACAGACAT
CAAAACGACATGGAGCACTGCACTGCACTCACCCACAAAGCACAACACGC
CACGATGCAATAGTGCTCTCACACCCTCTCACCCCCCCCACCCACCCAAT
TCAAGTTAAGCAGAAGCGGCCTCTTTGAGCCACCCACCCCCATCCGCCAC
TTCGCCTCCCCCTCTTCGCCTCCTCCCCTTGGATTTCTTCTCACGCAGCC
CCGTTCGACCGGCAGCACCACCCGCATTCATTCATACCATCATGTCGGGC
ATGACTCTGGAACGGGCACGAGCCAGCCACGAAGACATTGAGGCCTACGA
GGCTGCCATCGTTGCCATTTTGGAGGACAAACCACGGACGGTACGTGTTG
TTATCCCCCCCTCCTCTTCGCATGCCTCTTTGCTTGCCTCCAGGTCGACT
GTCTTGTGAGAAACAAGTGTCAAGCATGTACCTTACAGCGTCACCGTCCC
ACAAAGAAAGGTTGGACTGGAGTATGCAGTATATACTGCTCTTATCGCAT
TTCTGTCTTGCCTTCTATGACTGAACTGTCAGTCCATAACATAAGCCTCC
TCCCAAGTGCTCCCTCCCTTCCTTCCCCCACCCACCCGGAATAGAACAAG
GAACGCATATGGCAACAAAATCGCGTTGCCAACCTAATCGGTCAAATCCA
AGCCCGCTCCCAAGACCTCTTGAACATTTACCTCGACAAACACGGCGTAA
TGAAAGAAGAAGTCGCCTCCCTGAGAGGCCGGGACGCTTTCCCCACTTTC
TACTCCCGCCTGGACGCTGCCAAAGAATACCACCAAAAACATCCCAACCT
TCCCGTCAAACACCATCCGGCTGTCCAAGAAGAAGCGGAGCCTCGCCTGT
CTTTCTCCGGGGAGGAAGTGTGGGGGAAATACCTCGACCTCCAAGCATTG
CACATGGAATTCTATTCCATGCCCCAAACGCCTAAATGGGACTATCAAAT
GTACCTGGAAAAATTTACTGACTTTTCGGCCGTTCCCTCCGGAAAGAAAA
ACGCAGCATGGGCCAGgtgaggggggagggggggaagtgaaggaagaaag
gagtgaggatacccggcttgagtataggtgcgaacggtacaaactcaccc
cccatccattcctccctccgtacctatcgattctacaactttccctctta
gATACGTCAAAAACCTGTACGACTATCTCTTTTCGTTCATTCAACGCACC
CAGCCACTGCTCAACATCGAGGACGTCGTGGGCGGCGAGGGCGGGAGGGA
GGGTGGGGGGGAGGAAGCAGCATCAAGTAAAGCCGAAGCAGCGTTTGAGG
CGCTTTGGCAAGCAGGAGAATTACCGAGCGGCTGGCCCAAGCCCTCTACA
GCAGGCGAAGGTGGGAGGGAGGAAGGGCAGGGAGGGAAGGAGGAAGCACG
GCCGGTTGACTTGAGCAAATTTCGAGCCGCTGAGGATGTGGAGGTGCTGG
GGATGGAGAGGTTGAAGGAGGGATTGGTGGCTTTGGGCCTTAAGTGCGGA
GGAACGTTGAAGGAACGTGCGACCAGGTTGTTCTCGACAAAGGGGAAGAG
AAAGGAGGATATCGATAAGAAGCTGTGGGCAGGGGTGAAGAAGGGAGGGA
AGGAGGGAGGGAAGAAGGAGGGGAGTGGAGCAGCAGCGAATGGGAGTAGG
AATGGACACGGAGGTAACGAGGGAGGAAAAGAGGGAGGGGGCAGTAAGAA
GCAGTGTGCTTGGGTGGAATATAAGATAGGGTTATTGGTCGGGGAGGTCT
TGGGGGAGGTGATCGAAGCGACCAGAAAGTTCGTCGAGAAGAAACAGACA
AGAACGAAGGAGGAGAGGGAGGCTGAGTTGAAGCAGGAGGCGGAAGGGGG
CTTGCCAGAGATGAGGGGCGAGGGGGAAGACGAGGACGAGGACGAGGACG
AGGACGAGGACGGGCCCATTTACAATCCATTGAATTTGCCGTTAGGCTAC
GACGGGAAACCGATCCCTTACTGGCTGTACAAACTGCATGGTCTGGGCGT
GGAGTACAAGTGTGAGATATGTGGCAATCATTCTTATTGGGGCCGCCGAG
CATTTGACAGgttcgtttcgttcgctgctccgccctctttccaacccccc
ttcctaccttccatgctcataggatgctttggaaatgtaacacggcgcgt
tggttgaagagagtcatatcgtattcctcattatcactatccctcccttt
ctccttccctccctctctctcttcctcctgtcccaccagACATTTCCAAG
AATGGCGTCATGCCCATGGGATGCGTTGTTTGATGGTGCCCAACACGAAG
CACTTCCACGATATCACCACCATTAAAGACGCCTTGGCTCTGTACGGGCG
GATCAAGGAGCAACTGAAGGGCGAAGTTTACGATGCAGAGGTGGAGGAGG
AGTTCGAGGACTCGGAGGGTAACGTGTTGAATCGACGGACCTTCCAAGAC
CTGGCTCGGCAGGGTTTGCTCTAGATGGTTGCTGGGTATCCTAATTATGT
GATGGCCGACACCTGCCGACGTTCCTCCTGTTTTCTCACCTCTGCCCACT
GTGTGGAAACCCCCTCGTTCTCCCTGAGGTTCCCAGGCCAACGTATCTAA
GAGACGGACCTTTCAAAACATGTATTCACAGGCGCGATTCTAGAACATGT
ATTCACAGGCGCGGTACTAGAAGTGTCGCAGTGAGAAGGAGAAGGAGAAG
GAGGAGGGGGAGGGAGGGTGAACAGAAGGAGGAAGACGGAGGAAGAAAAA
AGGAGGCTTGTGTGCGTGCATGACAGCGGGGAACGGCAAGTGAAGGAGAA
GAGGGTTGAAAACAAATGAATAAAGAAAAGAAGCAAGCAAACGTTGTCAA
CGAAGCAACTTACCCAAGAA
back to top

protein sequence of NO10G00640.2

>NO10G00640.2-protein ID=NO10G00640.2-protein|Name=NO10G00640.2|organism=Nannochloropsis oceanica|type=polypeptide|length=487bp
MKEEVASLRGRDAFPTFYSRLDAAKEYHQKHPNLPVKHHPAVQEEAEPRL
SFSGEEVWGKYLDLQALHMEFYSMPQTPKWDYQMYLEKFTDFSAVPSGKK
NAAWARYVKNLYDYLFSFIQRTQPLLNIEDVVGGEGGREGGGEEAASSKA
EAAFEALWQAGELPSGWPKPSTAGEGGREEGQGGKEEARPVDLSKFRAAE
DVEVLGMERLKEGLVALGLKCGGTLKERATRLFSTKGKRKEDIDKKLWAG
VKKGGKEGGKKEGSGAAANGSRNGHGGNEGGKEGGGSKKQCAWVEYKIGL
LVGEVLGEVIEATRKFVEKKQTRTKEEREAELKQEAEGGLPEMRGEGEDE
DEDEDEDEDGPIYNPLNLPLGYDGKPIPYWLYKLHGLGVEYKCEICGNHS
YWGRRAFDRHFQEWRHAHGMRCLMVPNTKHFHDITTIKDALALYGRIKEQ
LKGEVYDAEVEEEFEDSEGNVLNRRTFQDLARQGLL*
back to top

protein sequence of NO10G00640.1

>NO10G00640.1-protein ID=NO10G00640.1-protein|Name=NO10G00640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=555bp
MSGMTLERARASHEDIEAYEAAIVAILEDKPRTNKERIWQQNRVANLIGQ
IQARSQDLLNIYLDKHGVMKEEVASLRGRDAFPTFYSRLDAAKEYHQKHP
NLPVKHHPAVQEEAEPRLSFSGEEVWGKYLDLQALHMEFYSMPQTPKWDY
QMYLEKFTDFSAVPSGKKNAAWARYVKNLYDYLFSFIQRTQPLLNIEDVV
GGEGGREGGGEEAASSKAEAAFEALWQAGELPSGWPKPSTAGEGGREEGQ
GGKEEARPVDLSKFRAAEDVEVLGMERLKEGLVALGLKCGGTLKERATRL
FSTKGKRKEDIDKKLWAGVKKGGKEGGKKEGSGAAANGSRNGHGGNEGGK
EGGGSKKQCAWVEYKIGLLVGEVLGEVIEATRKFVEKKQTRTKEEREAEL
KQEAEGGLPEMRGEGEDEDEDEDEDEDGPIYNPLNLPLGYDGKPIPYWLY
KLHGLGVEYKCEICGNHSYWGRRAFDRHFQEWRHAHGMRCLMVPNTKHFH
DITTIKDALALYGRIKEQLKGEVYDAEVEEEFEDSEGNVLNRRTFQDLAR
QGLL*
back to top
Synonyms
Publications