NO10G00590, NO10G00590 (gene) Nannochloropsis oceanica

Overview
NameNO10G00590
Unique NameNO10G00590
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length792
Alignment locationchr10:201024..201815 -

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Properties
Property NameValue
DescriptionMitochondrial inner membrane protease subunit 2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:201024..201815 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016020membrane
GO:0005739mitochondrion
Vocabulary: Molecular Function
TermDefinition
GO:0008236serine-type peptidase activity
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO:0019538protein metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR036286LexA/Signal_pep-like_sf
IPR015927Peptidase_S24_S26A/B/C
IPR000223Pept_S26A_signal_pept_1
Homology
BLAST of NO10G00590 vs. NCBI_GenBank
Match: XP_005855049.1 (signal peptidase I [Nannochloropsis gaditana CCMP526] >EKU21310.1 signal peptidase I [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 407.1 bits (1045), Expect = 4.000e-110
Identity = 200/259 (77.22%), Postives = 217/259 (83.78%), Query Frame = 0
Query:    2 RTSSPWVVLGHR-RSSSLSGLSSGNGRRPPLPPSYLAFHQLFSS-XXXXXXXXXXXXXXXXXGSLVDKVKAFFADAENRKDTTLFAVSFLVSLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVTKTYKNYERGDVVVFNPTRGYQEYVSQDPYITDKSKINEALIKRIIAKEGDVVEVKDGLLYINGAAQDEKYIAEGPAYVWGPSRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGKAICKYWPPWRLGLVEGP 259
            R  S +V +G     SS++ LS+GNGRRPP PPS   F  LF+S                  GSL+DK K+FF+D ENRKDTTLF  SFL+SLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVTKTYKNYERGDVVVFNPT+GYQEYVS+DPYITDKS+INEALIKRIIAK GDVVEVKDG L++NG AQ+EKYIAEGPAYVWGP RVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIG+AICKYWPPWRLGLVEGP
Sbjct:   32 RGLSSYVAVGRLCPKSSITSLSNGNGRRPPFPPSRTIFPPLFASDSGNSGEGKEEEEGGAEEGSLLDKAKSFFSDPENRKDTTLFVTSFLISLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVTKTYKNYERGDVVVFNPTQGYQEYVSRDPYITDKSRINEALIKRIIAKGGDVVEVKDGQLFVNGVAQEEKYIAEGPAYVWGPRRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGRAICKYWPPWRLGLVEGP 290          
BLAST of NO10G00590 vs. NCBI_GenBank
Match: EWM25296.1 (signal peptidase i [Nannochloropsis gaditana])

HSP 1 Score: 396.4 bits (1017), Expect = 7.100e-107
Identity = 195/254 (76.77%), Postives = 212/254 (83.46%), Query Frame = 0
Query:    2 RTSSPWVVLGHR-RSSSLSGLSSGNGRRPPLPPSYLAFHQLFSS-XXXXXXXXXXXXXXXXXGSLVDKVKAFFADAENRKDTTLFAVSFLVSLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVTKTYKNYERGDVVVFNPTRGYQEYVSQDPYITDKSKINEALIKRIIAKEGDVVEVKDGLLYINGAAQDEKYIAEGPAYVWGPSRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGKAICKYWPPWRLG 254
            R  S +V +G     SS++ LS+GNGRRPP PPS   F  LF+S                  GSL+DK K+FF+D ENRKDTTLF  SFL+SLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVTKTYKNYERGDVVVFNPT+GYQEYVS+DPYITDKS+INEALIKRIIAK GDVVEVKDG L++NG AQ+EKYIAEGPAYVWGP RVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIG+AICKYWPPWRLG
Sbjct:   32 RGLSSYVAVGRLCPKSSITSLSNGNGRRPPFPPSRTIFPPLFASDSGNSGEGKEEEEGGAEEGSLLDKAKSFFSDPENRKDTTLFVTSFLISLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVTKTYKNYERGDVVVFNPTQGYQEYVSRDPYITDKSRINEALIKRIIAKGGDVVEVKDGQLFVNGVAQEEKYIAEGPAYVWGPRRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGRAICKYWPPWRLG 285          
BLAST of NO10G00590 vs. NCBI_GenBank
Match: EJK52462.1 (hypothetical protein THAOC_28255 [Thalassiosira oceanica])

HSP 1 Score: 216.5 bits (550), Expect = 1.000e-52
Identity = 105/191 (54.97%), Postives = 130/191 (68.06%), Query Frame = 0
Query:   63 SLVDKVKAFFADAENRKDTTLFAVSFLVSLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVTKTYKNYERGDVVVFNPTRGYQEYVSQDPYITDKSKINEALIKRIIAKEGDVVEVKDGLLYINGAAQDEKYIAEGPAYVWGPSRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGKAICKYWPPWRLG 254
            S  ++V+ +FA  E ++D   +  S  ++L +R  I+EPRYIPSLSMYPTF VGDQLAVEKVTK  +   R +VVVFNP   ++E V          K  EALIKRI+A EGD VEV  G L++NG  QDE + AE   Y +GP  VP G  +VLGDNRNHSLD HIWGFLP EN+IG+A+  YWPPWR+G
Sbjct:   96 SFFEQVQEWFASEEGKEDVRTYTTSLGIALLLRLLIIEPRYIPSLSMYPTFEVGDQLAVEKVTKRIRPLNRNEVVVFNPPTSFKEIVGD-----TSRKAKEALIKRIVATEGDKVEVMGGKLFVNGKEQDEPFTAEDAQYEFGPVLVPAGEVLVLGDNRNHSLDGHIWGFLPAENVIGRAVFVYWPPWRVG 281          
BLAST of NO10G00590 vs. NCBI_GenBank
Match: OEU22583.1 (LexA/Signal peptidase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 215.3 bits (547), Expect = 2.300e-52
Identity = 102/191 (53.40%), Postives = 135/191 (70.68%), Query Frame = 0
Query:   63 SLVDKVKAFFADAENRKDTTLFAVSFLVSLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVTKTYKNYERGDVVVFNPTRGYQEYVSQDPYITDKSKINEALIKRIIAKEGDVVEVKDGLLYINGAAQDEKYIAEGPAYVWGPSRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGKAICKYWPPWRLG 254
            S++++ + +   AE + D   + VS  ++L +R  I+EPRYIPSLSM+PTF VGDQLAVEKVTK    + R +VVVFNP   +++ +  D Y    ++  EALIKRI+A EGD VEVK G L++NG  QDE + AE   Y +GP +VP    +VLGDNRNHSLD HIWGFLPK+N+IG+A+  YWPPWR+G
Sbjct:   91 SIIEQFQRWLKSAEGQDDVKTYFVSLFIALALRFTIIEPRYIPSLSMFPTFDVGDQLAVEKVTKRISPFYRQEVVVFNPPESFRDIIVGD-YGQSTARAKEALIKRIVAIEGDEVEVKGGKLFVNGDEQDEPFTAEDAKYEFGPVKVPPENVLVLGDNRNHSLDGHIWGFLPKKNVIGRAVFIYWPPWRVG 280          
BLAST of NO10G00590 vs. NCBI_GenBank
Match: CBN75099.1 (Signal peptidase I (SPase I) (Leader peptidase I) [Ectocarpus siliculosus])

HSP 1 Score: 210.3 bits (534), Expect = 7.300e-51
Identity = 99/184 (53.80%), Postives = 132/184 (71.74%), Query Frame = 0
Query:   74 DAENRKDTTLFAVSFLVSLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKV-TKTYKNYERGDVVVFNPTRGYQEYVSQDPYITDKSKINEALIKRIIAKEGDVVEVKDGLLYINGAAQDEKYIAEGPAYVWGPSRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGKAICKYWPPWRLGLVE 257
            + + + D  ++  S  ++L +R+  +EPR+IPSLSM+PTF +GDQLAV+K+ +K  + Y+R DVVVF P   ++E+       +D+ K  +ALIKR+IA  GD V++KDG L++NG  Q E Y  E P Y WGP  VP+GM MVLGDNRNHSLDSHIWGFLP EN+IG+AI KYWPPWR G +E
Sbjct:  108 ERDGKSDLKIYGTSLALALVVRSVALEPRFIPSLSMFPTFEIGDQLAVDKLSSKLSRPYQRKDVVVFYPPPKFREF-------SDRGK-KDALIKRVIAVGGDAVQIKDGSLFVNGQEQFEDYTFEEPEYSWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAIFKYWPPWRAGTIE 283          
BLAST of NO10G00590 vs. NCBI_GenBank
Match: XP_002289348.1 (thylakoidal processing peptidase, partial [Thalassiosira pseudonana CCMP1335] >EED92885.1 thylakoidal processing peptidase, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 208.8 bits (530), Expect = 2.100e-50
Identity = 102/183 (55.74%), Postives = 126/183 (68.85%), Query Frame = 0
Query:   71 FFADAENRKDTTLFAVSFLVSLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVTKTYKNYERGDVVVFNPTRGYQEYVSQDPYITDKSKINEALIKRIIAKEGDVVEVKDGLLYINGAAQDEKYIAEGPAYVWGPSRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGKAICKYWPPWRLG 254
            +FA  E ++D   + VS  V+L +R  I+EPRYIPSLSM+PTF VGDQLAVEKVTK  + + R +VVVF+P   ++E V          K  EALIKRI+A EGD VEV  G L++NG  Q+E + AE   Y +GP  VP G  +VLGDNRNHSLD HIWGFLP EN+IG+A+  YWPPWR G
Sbjct:    2 WFASDEGKEDVKTYTVSLGVALLLRLLIIEPRYIPSLSMFPTFEVGDQLAVEKVTKRIRPFSRNEVVVFHPPMKFREIVGD-----TSRKAKEALIKRIVATEGDKVEVMGGKLFVNGVEQEEPFTAEDAEYDFGPVVVPPGNVLVLGDNRNHSLDGHIWGFLPTENVIGRAVFVYWPPWRCG 179          
BLAST of NO10G00590 vs. NCBI_GenBank
Match: XP_005535222.1 (similar to signal peptidase [Cyanidioschyzon merolae strain 10D] >BAM78936.1 similar to signal peptidase [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 205.3 bits (521), Expect = 2.300e-49
Identity = 101/186 (54.30%), Postives = 131/186 (70.43%), Query Frame = 0
Query:   80 DTTLFAVSFLVSLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVT-KTYKNYERGDVVVFNPTRGYQEYVSQDPYITDKS--------KINEALIKRIIAKEGDVVEVKDGLLYINGAAQDEKYIAEGPAYVWGPSRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGKAICKYWPPWRLGLVE 257
            D  +F  SFL ++ IRAF+VEPRYIPSLSMYPTF VGDQL V+KVT K  ++ +RGDVVVF P     E   +     + +           +A+IKR++A  GDVVE++DG LY+NG AQ E YIAE P Y WGP +VPDG  +VLGDNR++SLDSH+WGFLP+ N+IG+A+ +YWP  R+G +E
Sbjct:  150 DVRVFTASFLAAVFIRAFVVEPRYIPSLSMYPTFDVGDQLLVDKVTLKLGRHIQRGDVVVFYPPPALIEASKETAKALNAAGETGAHQYGARDAMIKRVVALGGDVVEIRDGRLYVNGEAQIETYIAESPDYQWGPVQVPDGYLVVLGDNRSNSLDSHVWGFLPERNVIGRAVFRYWPLTRVGTIE 335          
BLAST of NO10G00590 vs. NCBI_GenBank
Match: XP_002177521.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC51984.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 205.3 bits (521), Expect = 2.300e-49
Identity = 100/175 (57.14%), Postives = 125/175 (71.43%), Query Frame = 0
Query:   79 KDTTLFAVSFLVSLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVTKTYKNYERGDVVVFNPTRGYQEYVSQDPYITDKSKINEALIKRIIAKEGDVVEVKDGLLYINGAAQDEKYIAEGPAYVWGPSRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGKAICKYWPPWRLG 254
            +D   + +S  ++L +R  I+EPR+IPSLSMYPTF VGDQLAVEKVTK  K + R +VVVF P + +++ V       DKSK  EALIKRI+A EGD VE+K+G L IN   Q+E Y AE   Y +GP RVP    +VLGDNRNHSLD HIWGFLP +N+IG+A+  YWPPWR+G
Sbjct:    1 EDVKTYFISLFLALLLRFTIIEPRFIPSLSMYPTFEVGDQLAVEKVTKRIKPFYRTEVVVFQPPQAFRDIVENQ--YGDKSKGKEALIKRIVAVEGDKVEIKNGKLLINDIEQEEAYTAEDAQYAFGPVRVPPENVLVLGDNRNHSLDGHIWGFLPTKNVIGRAVFVYWPPWRVG 173          
BLAST of NO10G00590 vs. NCBI_GenBank
Match: XP_005826622.1 (hypothetical protein GUITHDRAFT_154393 [Guillardia theta CCMP2712] >EKX39642.1 hypothetical protein GUITHDRAFT_154393 [Guillardia theta CCMP2712])

HSP 1 Score: 204.5 bits (519), Expect = 4.000e-49
Identity = 100/194 (51.55%), Postives = 133/194 (68.56%), Query Frame = 0
Query:   63 SLVDKVKAFFADAENRKDTTLFAVSFLVSLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVTKTYKNYERGDVVVFNPTRGYQEYVSQDPYITDKSKINEALIKRIIAKEGDVVEVKDGLLYINGAAQDEKYIAEGPAYVWGPSRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGKAICKYWPPWRLGLVE 257
            S++D +  +F   E R++   + ++F++++  R F+VEPRYIPSLSM+PTF VGD LAVEK+T  ++ Y+R DVVVF     + +YV       D+SK NE LIKRIIA EGD +++  G +YIN     E +I   P Y +GP  VP G  +VLGDNRN SLDSHIWGFLPKENIIG+A+ KYWP  R+ LV+
Sbjct:  103 SVIDGLIKWFKSDEGREEALQWTITFVIAISFRVFVVEPRYIPSLSMFPTFHVGDMLAVEKITHYFRPYQRDDVVVFRAPPAFADYV-------DESKANEDLIKRIIAVEGDTIKITKGKVYINEQEVKEPFINGPPNYDFGPVTVPAGCVLVLGDNRNASLDSHIWGFLPKENIIGRAVFKYWPLNRVSLVQ 289          
BLAST of NO10G00590 vs. NCBI_GenBank
Match: CEL93256.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 201.4 bits (511), Expect = 3.400e-48
Identity = 95/181 (52.49%), Postives = 128/181 (70.72%), Query Frame = 0
Query:   86 VSFLVSLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVTKTYKNYERGDVVVFNPTR------GYQEYVSQDPYITDKSKINEALIKRIIAKEGDVVEVKDGLLYINGAAQDEKYIAEGPAYVWGPSRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGKAICKYWPPWRLGLVEGPFQ 261
            ++F +SL IR F+ EPR+IPSLSMYPT  VGD + VEKV+K ++   RGDV+VF P +      G ++  S    + +  K + A IKR +A  GD VEVK+G L++NG  Q+EK+I E P Y++GP +VPD M M+LGDNRN SLDSH+WGFLP +N+IG+A+ KYWPPWR G +  PF+
Sbjct:  172 IAFFISLMIRIFVAEPRFIPSLSMYPTLDVGDNVVVEKVSKYWREPHRGDVLVFVPPQEALSLSGSKDDSSAFARLLNGGKSDRAFIKRCVAVGGDTVEVKNGRLFVNGDLQEEKFINEAPRYMFGPFKVPDSMVMMLGDNRNQSLDSHVWGFLPADNVIGRAVFKYWPPWRAGTI--PFE 350          
The following BLAST results are available for this feature:
BLAST of NO10G00590 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855049.14.000e-11077.22signal peptidase I [Nannochloropsis gaditana CCMP5... [more]
EWM25296.17.100e-10776.77signal peptidase i [Nannochloropsis gaditana][more]
EJK52462.11.000e-5254.97hypothetical protein THAOC_28255 [Thalassiosira oc... [more]
OEU22583.12.300e-5253.40LexA/Signal peptidase [Fragilariopsis cylindrus CC... [more]
CBN75099.17.300e-5153.80Signal peptidase I (SPase I) (Leader peptidase I) ... [more]
XP_002289348.12.100e-5055.74thylakoidal processing peptidase, partial [Thalass... [more]
XP_005535222.12.300e-4954.30similar to signal peptidase [Cyanidioschyzon merol... [more]
XP_002177521.12.300e-4957.14predicted protein, partial [Phaeodactylum tricornu... [more]
XP_005826622.14.000e-4951.55hypothetical protein GUITHDRAFT_154393 [Guillardia... [more]
CEL93256.13.400e-4852.49unnamed protein product [Vitrella brassicaformis C... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G00590.1NO10G00590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586766gene_4159Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100240g5gene5213Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G00590.1NO10G00590.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G00590 ID=NO10G00590|Name=NO10G00590|organism=Nannochloropsis oceanica|type=gene|length=792bp
ATGCGAACGTCCTCACCCTGGGTTGTACTAGGCCACCGCCGCAGTAGCAG
CCTCAGCGGTCTCAGCAGCGGCAACGGAAGAAGACCGCCCCTTCCTCCTT
CCTACCTTGCCTTCCATCAGCTTTTTTCCTCCAGCAACAGCGGTGAGGGC
GAGGATGAGGAGCGGGAGGAGAATGAGGAGGATGGCAGCTTGGTTGACAA
GGTCAAGGCCTTCTTTGCCGACGCGGAGAACCGCAAAGACACCACGCTGT
TTGCAGTCTCCTTCCTCGTCTCCCTGGGCATCCGAGCCTTCATCGTTGAG
CCCCGCTACATCCCTTCCCTGAGCATGTACCCAACCTTCCTGGTGGGTGA
TCAATTGGCCGTGGAAAAGGTGACGAAAACCTACAAGAATTACGAGCGCG
GGGACGTTGTCGTCTTCAACCCGACCCGTGGGTATCAAGAGTACGTGAGC
CAAGACCCTTATATTACAGACAAGAGCAAGATCAACGAGGCATTAATCAA
GCGGATCATTGCGAAGGAAGGGGATGTGGTGGAGGTAAAAGATGGCTTGC
TCTATATCAATGGCGCGGCGCAAGACGAGAAGTACATTGCGGAGGGTCCG
GCCTATGTGTGGGGGCCTAGTCGAGTGCCGGATGGCATGTATATGGTGTT
GGGAGATAACCGGAATCATTCTCTTGATTCGCATATCTGGGGATTCTTGC
CCAAGGAGAATATAATTGGCAAGGCAATTTGCAAGTACTGGCCGCCGTGG
CGGTTGGGCTTGGTTGAGGGGCCGTTCCAGCAGGCGTCGTAG
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protein sequence of NO10G00590.1

>NO10G00590.1-protein ID=NO10G00590.1-protein|Name=NO10G00590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp
MRTSSPWVVLGHRRSSSLSGLSSGNGRRPPLPPSYLAFHQLFSSSNSGEG
EDEEREENEEDGSLVDKVKAFFADAENRKDTTLFAVSFLVSLGIRAFIVE
PRYIPSLSMYPTFLVGDQLAVEKVTKTYKNYERGDVVVFNPTRGYQEYVS
QDPYITDKSKINEALIKRIIAKEGDVVEVKDGLLYINGAAQDEKYIAEGP
AYVWGPSRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGKAICKYWPPW
RLGLVEGPFQQAS*
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Synonyms
Publications