NO10G00590.1, NO10G00590.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G00590.1
Unique NameNO10G00590.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length792
Alignment locationchr10:201024..201815 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:201024..201815 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G00590.1 vs.
Match: XP_005855049.1 (signal peptidase I [Nannochloropsis gaditana CCMP526]; EKU21310.1 signal peptidase I [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 422.9 bits (1086), Expect = 7.100e-115
Identity = 209/260 (80.38%), Postives = 229/260 (88.08%), Query Frame = 0 
Query:    2 RTSSPWVVLGHR-RSSSLSGLSSGNGRRPPLPPSYLAFHQLFSSS--NSGEGEDEEREENEEDGSLVDKVKAFFADAENRKDTTLFAVSFLVSLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVTKTYKNYERGDVVVFNPTRGYQEYVSQDPYITDKSKINEALIKRIIAKEGDVVEVKDGLLYINGAAQDEKYIAEGPAYVWGPSRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGKAICKYWPPWRLGLVEGP 259
            R  S +V +G     SS++ LS+GNGRRPP PPS   F  LF+S   NSGEG++EE E   E+GSL+DK K+FF+D ENRKDTTLF  SFL+SLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVTKTYKNYERGDVVVFNPT+GYQEYVS+DPYITDKS+INEALIKRIIAK GDVVEVKDG L++NG AQ+EKYIAEGPAYVWGP RVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIG+AICKYWPPWRLGLVEGP
Sbjct:   32 RGLSSYVAVGRLCPKSSITSLSNGNGRRPPFPPSRTIFPPLFASDSGNSGEGKEEE-EGGAEEGSLLDKAKSFFSDPENRKDTTLFVTSFLISLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVTKTYKNYERGDVVVFNPTQGYQEYVSRDPYITDKSRINEALIKRIIAKGGDVVEVKDGQLFVNGVAQEEKYIAEGPAYVWGPRRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGRAICKYWPPWRLGLVEGP 290
The following BLAST results are available for this feature:
BLAST of NO10G00590.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855049.17.100e-11580.38signal peptidase I [Nannochloropsis gaditana CCMP5... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G00590NO10G00590Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G00590.1NO10G00590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G00590.1.cds1NO10G00590.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G00590.1 ID=NO10G00590.1|Name=NO10G00590.1|organism=Nannochloropsis oceanica|type=mRNA|length=792bp
ATGCGAACGTCCTCACCCTGGGTTGTACTAGGCCACCGCCGCAGTAGCAG
CCTCAGCGGTCTCAGCAGCGGCAACGGAAGAAGACCGCCCCTTCCTCCTT
CCTACCTTGCCTTCCATCAGCTTTTTTCCTCCAGCAACAGCGGTGAGGGC
GAGGATGAGGAGCGGGAGGAGAATGAGGAGGATGGCAGCTTGGTTGACAA
GGTCAAGGCCTTCTTTGCCGACGCGGAGAACCGCAAAGACACCACGCTGT
TTGCAGTCTCCTTCCTCGTCTCCCTGGGCATCCGAGCCTTCATCGTTGAG
CCCCGCTACATCCCTTCCCTGAGCATGTACCCAACCTTCCTGGTGGGTGA
TCAATTGGCCGTGGAAAAGGTGACGAAAACCTACAAGAATTACGAGCGCG
GGGACGTTGTCGTCTTCAACCCGACCCGTGGGTATCAAGAGTACGTGAGC
CAAGACCCTTATATTACAGACAAGAGCAAGATCAACGAGGCATTAATCAA
GCGGATCATTGCGAAGGAAGGGGATGTGGTGGAGGTAAAAGATGGCTTGC
TCTATATCAATGGCGCGGCGCAAGACGAGAAGTACATTGCGGAGGGTCCG
GCCTATGTGTGGGGGCCTAGTCGAGTGCCGGATGGCATGTATATGGTGTT
GGGAGATAACCGGAATCATTCTCTTGATTCGCATATCTGGGGATTCTTGC
CCAAGGAGAATATAATTGGCAAGGCAATTTGCAAGTACTGGCCGCCGTGG
CGGTTGGGCTTGGTTGAGGGGCCGTTCCAGCAGGCGTCGTAG
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protein sequence of NO10G00590.1

>NO10G00590.1-protein ID=NO10G00590.1-protein|Name=NO10G00590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp
MRTSSPWVVLGHRRSSSLSGLSSGNGRRPPLPPSYLAFHQLFSSSNSGEG
EDEEREENEEDGSLVDKVKAFFADAENRKDTTLFAVSFLVSLGIRAFIVE
PRYIPSLSMYPTFLVGDQLAVEKVTKTYKNYERGDVVVFNPTRGYQEYVS
QDPYITDKSKINEALIKRIIAKEGDVVEVKDGLLYINGAAQDEKYIAEGP
AYVWGPSRVPDGMYMVLGDNRNHSLDSHIWGFLPKENIIGKAICKYWPPW
RLGLVEGPFQQAS*
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mRNA from alignment at chr10:201024..201815-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G00590.1 ID=NO10G00590.1|Name=NO10G00590.1|organism=Nannochloropsis oceanica|type=mRNA|length=792bp|location=Sequence derived from alignment at chr10:201024..201815- (Nannochloropsis oceanica)
ATGCGAACGTCCTCACCCTGGGTTGTACTAGGCCACCGCCGCAGTAGCAG
CCTCAGCGGTCTCAGCAGCGGCAACGGAAGAAGACCGCCCCTTCCTCCTT
CCTACCTTGCCTTCCATCAGCTTTTTTCCTCCAGCAACAGCGGTGAGGGC
GAGGATGAGGAGCGGGAGGAGAATGAGGAGGATGGCAGCTTGGTTGACAA
GGTCAAGGCCTTCTTTGCCGACGCGGAGAACCGCAAAGACACCACGCTGT
TTGCAGTCTCCTTCCTCGTCTCCCTGGGCATCCGAGCCTTCATCGTTGAG
CCCCGCTACATCCCTTCCCTGAGCATGTACCCAACCTTCCTGGTGGGTGA
TCAATTGGCCGTGGAAAAGGTGACGAAAACCTACAAGAATTACGAGCGCG
GGGACGTTGTCGTCTTCAACCCGACCCGTGGGTATCAAGAGTACGTGAGC
CAAGACCCTTATATTACAGACAAGAGCAAGATCAACGAGGCATTAATCAA
GCGGATCATTGCGAAGGAAGGGGATGTGGTGGAGGTAAAAGATGGCTTGC
TCTATATCAATGGCGCGGCGCAAGACGAGAAGTACATTGCGGAGGGTCCG
GCCTATGTGTGGGGGCCTAGTCGAGTGCCGGATGGCATGTATATGGTGTT
GGGAGATAACCGGAATCATTCTCTTGATTCGCATATCTGGGGATTCTTGC
CCAAGGAGAATATAATTGGCAAGGCAATTTGCAAGTACTGGCCGCCGTGG
CGGTTGGGCTTGGTTGAGGGGCCGTTCCAGCAGGCGTCGTAG
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Coding sequence (CDS) from alignment at chr10:201024..201815-

>NO10G00590.1 ID=NO10G00590.1|Name=NO10G00590.1|organism=Nannochloropsis oceanica|type=CDS|length=792bp|location=Sequence derived from alignment at chr10:201024..201815- (Nannochloropsis oceanica)
ATGCGAACGTCCTCACCCTGGGTTGTACTAGGCCACCGCCGCAGTAGCAG
CCTCAGCGGTCTCAGCAGCGGCAACGGAAGAAGACCGCCCCTTCCTCCTT
CCTACCTTGCCTTCCATCAGCTTTTTTCCTCCAGCAACAGCGGTGAGGGC
GAGGATGAGGAGCGGGAGGAGAATGAGGAGGATGGCAGCTTGGTTGACAA
GGTCAAGGCCTTCTTTGCCGACGCGGAGAACCGCAAAGACACCACGCTGT
TTGCAGTCTCCTTCCTCGTCTCCCTGGGCATCCGAGCCTTCATCGTTGAG
CCCCGCTACATCCCTTCCCTGAGCATGTACCCAACCTTCCTGGTGGGTGA
TCAATTGGCCGTGGAAAAGGTGACGAAAACCTACAAGAATTACGAGCGCG
GGGACGTTGTCGTCTTCAACCCGACCCGTGGGTATCAAGAGTACGTGAGC
CAAGACCCTTATATTACAGACAAGAGCAAGATCAACGAGGCATTAATCAA
GCGGATCATTGCGAAGGAAGGGGATGTGGTGGAGGTAAAAGATGGCTTGC
TCTATATCAATGGCGCGGCGCAAGACGAGAAGTACATTGCGGAGGGTCCG
GCCTATGTGTGGGGGCCTAGTCGAGTGCCGGATGGCATGTATATGGTGTT
GGGAGATAACCGGAATCATTCTCTTGATTCGCATATCTGGGGATTCTTGC
CCAAGGAGAATATAATTGGCAAGGCAATTTGCAAGTACTGGCCGCCGTGG
CGGTTGGGCTTGGTTGAGGGGCCGTTCCAGCAGGCGTCGTAG
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Synonyms
Publications