NO10G00560, NO10G00560 (gene) Nannochloropsis oceanica

Overview
NameNO10G00560
Unique NameNO10G00560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length570
Alignment locationchr10:187949..188518 +

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Properties
Property NameValue
DescriptionMFS general substrate transporter
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:187949..188518 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Homology
BLAST of NO10G00560 vs. NCBI_GenBank
Match: OEU12666.1 (MFS general substrate transporter [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 81.3 bits (199), Expect = 3.700e-12
Identity = 39/60 (65.00%), Postives = 48/60 (80.00%), Query Frame = 0
Query:    1 MDSVPKEDRGKWNSLESVTMATWSGSAVIGGLLVDRYGFLFNNLITASLQLVSTLPLFLV 61
            MD+VPKE+RGKW SLESV M +WSGSA +GG+LV+R G LFN   TA LQL++T PL L+
Sbjct:  402 MDNVPKEERGKWASLESVNMFSWSGSAALGGILVERKGILFNFCFTAVLQLIATGPLLLL 461          
BLAST of NO10G00560 vs. NCBI_GenBank
Match: CEP00650.1 (hypothetical protein PBRA_001704 [Plasmodiophora brassicae])

HSP 1 Score: 69.3 bits (168), Expect = 1.400e-8
Identity = 31/57 (54.39%), Postives = 44/57 (77.19%), Query Frame = 0
Query:    1 MDSVPKEDRGKWNSLESVTMATWSGSAVIGGLLVDRYGFLFNNLITASLQLVSTLPL 58
            MD +PK+ RG WNSLESVT+ +W+GSA IGG++VD++G+    L TA+L  +S LP+
Sbjct:  366 MDIIPKKSRGTWNSLESVTIFSWTGSAAIGGIVVDQWGYRTCFLATAALYAISCLPI 422          
BLAST of NO10G00560 vs. NCBI_GenBank
Match: PNW70136.1 (hypothetical protein CHLRE_17g707250v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 69.3 bits (168), Expect = 1.400e-8
Identity = 34/65 (52.31%), Postives = 43/65 (66.15%), Query Frame = 0
Query:    1 MDSVPKEDRGKWNSLESVTMATWSGSAVIGGLLVDRYGFLFNNLITASLQLVSTLPLFLVLGLVP 66
            MD VPKE R  WNSLESVT   WSGSA +GG L+ +YGF F  ++TA +Q +      L+L +VP
Sbjct: 1206 MDFVPKESRAAWNSLESVTAFGWSGSAALGGWLIHKYGFQFTFIVTALMQSMGWAMSMLLLPIVP 1270          
BLAST of NO10G00560 vs. NCBI_GenBank
Match: XP_002772738.1 (hypothetical protein Pmar_PMAR014955 [Perkinsus marinus ATCC 50983] >EER04554.1 hypothetical protein Pmar_PMAR014955 [Perkinsus marinus ATCC 50983])

HSP 1 Score: 67.4 bits (163), Expect = 5.500e-8
Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 0
Query:    1 MDSVPKEDRGKWNSLESVTMATWSGSAVIGGLLVDRYGFLFNNLITASLQLVSTLPLFLVLGLVPCE 68
            MD VP   RG+WN+LES++  TWSGSAVIGG L+D + + +  ++TA + LV+ L    +L LVP E
Sbjct:  330 MDFVPSHQRGRWNALESLSSMTWSGSAVIGGYLMDNHDYRYTFVVTAYIYLVALLMRLPLLKLVPKE 396          
BLAST of NO10G00560 vs. NCBI_GenBank
Match: XP_002785461.1 (conserved hypothetical protein [Perkinsus marinus ATCC 50983] >EER17257.1 conserved hypothetical protein [Perkinsus marinus ATCC 50983])

HSP 1 Score: 67.4 bits (163), Expect = 5.500e-8
Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 0
Query:    1 MDSVPKEDRGKWNSLESVTMATWSGSAVIGGLLVDRYGFLFNNLITASLQLVSTLPLFLVLGLVPCE 68
            MD VP   RG+WN+LES++  TWSGSAVIGG L+D + + +  ++TA + LV+ L    +L LVP E
Sbjct:  359 MDFVPSHQRGRWNALESLSSMTWSGSAVIGGYLMDNHDYRYTFVVTAYIYLVALLMRLPLLKLVPKE 425          
BLAST of NO10G00560 vs. NCBI_GenBank
Match: XP_009032938.1 (hypothetical protein AURANDRAFT_61023 [Aureococcus anophagefferens] >EGB11814.1 hypothetical protein AURANDRAFT_61023 [Aureococcus anophagefferens])

HSP 1 Score: 67.4 bits (163), Expect = 5.500e-8
Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 0
Query:    1 MDSVPKEDRGKWNSLESVTMATWSGSAVIGGLLVDRYGFLFNNLITASLQLVSTLPLFLVLGLV 65
            MD VP  DRGKWN+++ VT   WSGSAV+GG LVDR G+    LITA +QL++      ++G+V
Sbjct:  654 MDHVPYGDRGKWNAVDGVTRFGWSGSAVLGGYLVDRGGYALTFLITAGMQLLAAALWLALVGVV 717          
BLAST of NO10G00560 vs. NCBI_GenBank
Match: GAX74844.1 (hypothetical protein CEUSTIGMA_g2290.t1 [Chlamydomonas eustigma])

HSP 1 Score: 67.0 bits (162), Expect = 7.100e-8
Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = 0
Query:    1 MDSVPKEDRGKWNSLESVTMATWSGSAVIGGLLVDRYGFLFNNLITASLQLVSTLPLFLVLGLVP 66
            MD V KE+R KWNS E++T+  WSGSA +GG L+  YGF     ITA++QL+S     L+L +VP
Sbjct:  608 MDYVSKENRAKWNSFEAITVFGWSGSAALGGWLIHEYGFQVTFHITATMQLISWCFTLLLLHMVP 672          
BLAST of NO10G00560 vs. NCBI_GenBank
Match: PSC76787.1 (Major Facilitator Superfamily (MFS) [Micractinium conductrix])

HSP 1 Score: 67.0 bits (162), Expect = 7.100e-8
Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = 0
Query:    1 MDSVPKEDRGKWNSLESVTMATWSGSAVIGGLLVDRYGFLFNNLITASLQLVSTLPLFLVLGLVP 66
            MD VP+  RGK N+++S+   +WSGSA  GG L+ RYGF    LITA ++L + LPLF +L  VP
Sbjct:  450 MDCVPRRHRGKVNAVDSIRTFSWSGSAAAGGWLISRYGFQTTFLITAGIKLGAFLPLFALLAYVP 514          
BLAST of NO10G00560 vs. NCBI_GenBank
Match: XP_014155258.1 (hypothetical protein SARC_06316 [Sphaeroforma arctica JP610] >KNC81356.1 hypothetical protein SARC_06316 [Sphaeroforma arctica JP610])

HSP 1 Score: 65.9 bits (159), Expect = 1.600e-7
Identity = 34/69 (49.28%), Postives = 45/69 (65.22%), Query Frame = 0
Query:    1 MDSVPKEDRGKWNSLESVTMATWSGSAVIGGLLVDRYGFLFNNLITASLQLVSTLPLFLVLGLVPCERN 70
            MD  P   R KW +LES++   WSGSAV+GG+LVD YGF      TA++QL++  PL L+L LV  E +
Sbjct:  366 MDYCPPNQRAKWGALESLSAFGWSGSAVLGGILVDSYGFDIAFHATATVQLIAWSPLLLLLPLVAREEH 434          
BLAST of NO10G00560 vs. NCBI_GenBank
Match: XP_002184256.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC44434.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 65.5 bits (158), Expect = 2.100e-7
Identity = 31/62 (50.00%), Postives = 45/62 (72.58%), Query Frame = 0
Query:    1 MDSVPKEDRGKWNSLESVTMATWSGSAVIGGLLVDRYGFLFNNLITASLQLVSTLPLFLVLG 63
            MD+VP  +RGKW++LESV M +WSGSA +GG+++   G L   ++TA  QL++TLPL  + G
Sbjct:  431 MDNVPPHERGKWSALESVNMFSWSGSAFVGGMVIGWGGILPLFIVTACGQLLATLPLVALFG 492          
The following BLAST results are available for this feature:
BLAST of NO10G00560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 13
Match NameE-valueIdentityDescription
OEU12666.13.700e-1265.00MFS general substrate transporter [Fragilariopsis ... [more]
CEP00650.11.400e-854.39hypothetical protein PBRA_001704 [Plasmodiophora b... [more]
PNW70136.11.400e-852.31hypothetical protein CHLRE_17g707250v5 [Chlamydomo... [more]
XP_002772738.15.500e-849.25hypothetical protein Pmar_PMAR014955 [Perkinsus ma... [more]
XP_002785461.15.500e-849.25conserved hypothetical protein [Perkinsus marinus ... [more]
XP_009032938.15.500e-851.56hypothetical protein AURANDRAFT_61023 [Aureococcus... [more]
GAX74844.17.100e-850.77hypothetical protein CEUSTIGMA_g2290.t1 [Chlamydom... [more]
PSC76787.17.100e-850.77Major Facilitator Superfamily (MFS) [Micractinium ... [more]
XP_014155258.11.600e-749.28hypothetical protein SARC_06316 [Sphaeroforma arct... [more]
XP_002184256.12.100e-750.00predicted protein [Phaeodactylum tricornutum CCAP ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G00560.1NO10G00560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G00560.1NO10G00560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G00560 ID=NO10G00560|Name=NO10G00560|organism=Nannochloropsis oceanica|type=gene|length=570bp
ATGGACTCTGTCCCAAAGGAAGACAGGGGGAAGTGGAATAGTCTGGAGAG
TGTCACCATGGCGACTTGGAGTGGCTCGGCCGTGATAGGAGGGTTGTTGG
TCGATAGGTATGGATTTTTGTTCAACAACTTGATCACCGCGTCTTTGCAG
CTAGTGAGTACCCTCCCGTTGTTTCTGGTGTTGGGCCTGGTGCCCTGTGA
GAGGAATGGTGGGGGGGGAATGGAAGAAGAGGAGGAAGAGGGGTGGAGGA
AGGACAAGGAAGAAACAGAGATGGATTTGTCACATGGATGGGAATTAGGA
GCGAGTTTTTCGAATTTCTTTTTTGGGACCATCCCGCCGACATTGGGTAG
TGCAGGGAGTGTGAAGAAAGTATTGGAGGGATGGGGGGATGAAGAAAGTG
CGAGTGCTGCGTGGGATGAGCAGTTGCGGGAGCAGCGGGCGTGGTTTAAG
GGAGGAAGGGAGGAGGAGATGTCATTGCCATTGGATGGGGATGAGGACTT
GGCTGTGTTGGAGAGGGTTTTGGAGAGGGGAAGAAGCCGGGCGGGCACGG
TGGAAGACGTGGAGCTCTGA
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protein sequence of NO10G00560.1

>NO10G00560.1-protein ID=NO10G00560.1-protein|Name=NO10G00560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=190bp
MDSVPKEDRGKWNSLESVTMATWSGSAVIGGLLVDRYGFLFNNLITASLQ
LVSTLPLFLVLGLVPCERNGGGGMEEEEEEGWRKDKEETEMDLSHGWELG
ASFSNFFFGTIPPTLGSAGSVKKVLEGWGDEESASAAWDEQLREQRAWFK
GGREEEMSLPLDGDEDLAVLERVLERGRSRAGTVEDVEL*
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Synonyms
Publications