NO10G00560.1, NO10G00560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G00560.1
Unique NameNO10G00560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length570
Alignment locationchr10:187949..188518 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:187949..188518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G00560.1 vs.
Match: OEU12666.1 (MFS general substrate transporter [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 82.4 bits (202), Expect = 1.600e-12
Identity = 50/97 (51.55%), Postives = 62/97 (63.92%), Query Frame = 0 
Query:    1 MDSVPKEDRGKWNSLESVTMATWSGSAVIGGLLVDRYGFLFNNLITASLQLVSTLPLFLVLGLVPCE---------RNGGGGMEEEEEEGWRKDKEE 89
            MD+VPKE+RGKW SLESV M +WSGSA +GG+LV+R G LFN   TA LQL++T PL L+   V  E         +    G +EEEEE   +D EE
Sbjct:  402 MDNVPKEERGKWASLESVNMFSWSGSAALGGILVERKGILFNFCFTAVLQLIATGPLLLLGFFVDKEDETISTSLNQPSESGNDEEEEE---EDDEE 495
The following BLAST results are available for this feature:
BLAST of NO10G00560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OEU12666.11.600e-1251.55MFS general substrate transporter [Fragilariopsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G00560NO10G00560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G00560.1NO10G00560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G00560.1.cds1NO10G00560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G00560.1 ID=NO10G00560.1|Name=NO10G00560.1|organism=Nannochloropsis oceanica|type=mRNA|length=570bp
ATGGACTCTGTCCCAAAGGAAGACAGGGGGAAGTGGAATAGTCTGGAGAG
TGTCACCATGGCGACTTGGAGTGGCTCGGCCGTGATAGGAGGGTTGTTGG
TCGATAGGTATGGATTTTTGTTCAACAACTTGATCACCGCGTCTTTGCAG
CTAGTGAGTACCCTCCCGTTGTTTCTGGTGTTGGGCCTGGTGCCCTGTGA
GAGGAATGGTGGGGGGGGAATGGAAGAAGAGGAGGAAGAGGGGTGGAGGA
AGGACAAGGAAGAAACAGAGATGGATTTGTCACATGGATGGGAATTAGGA
GCGAGTTTTTCGAATTTCTTTTTTGGGACCATCCCGCCGACATTGGGTAG
TGCAGGGAGTGTGAAGAAAGTATTGGAGGGATGGGGGGATGAAGAAAGTG
CGAGTGCTGCGTGGGATGAGCAGTTGCGGGAGCAGCGGGCGTGGTTTAAG
GGAGGAAGGGAGGAGGAGATGTCATTGCCATTGGATGGGGATGAGGACTT
GGCTGTGTTGGAGAGGGTTTTGGAGAGGGGAAGAAGCCGGGCGGGCACGG
TGGAAGACGTGGAGCTCTGA
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protein sequence of NO10G00560.1

>NO10G00560.1-protein ID=NO10G00560.1-protein|Name=NO10G00560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=190bp
MDSVPKEDRGKWNSLESVTMATWSGSAVIGGLLVDRYGFLFNNLITASLQ
LVSTLPLFLVLGLVPCERNGGGGMEEEEEEGWRKDKEETEMDLSHGWELG
ASFSNFFFGTIPPTLGSAGSVKKVLEGWGDEESASAAWDEQLREQRAWFK
GGREEEMSLPLDGDEDLAVLERVLERGRSRAGTVEDVEL*
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mRNA from alignment at chr10:187949..188518+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G00560.1 ID=NO10G00560.1|Name=NO10G00560.1|organism=Nannochloropsis oceanica|type=mRNA|length=570bp|location=Sequence derived from alignment at chr10:187949..188518+ (Nannochloropsis oceanica)
ATGGACTCTGTCCCAAAGGAAGACAGGGGGAAGTGGAATAGTCTGGAGAG
TGTCACCATGGCGACTTGGAGTGGCTCGGCCGTGATAGGAGGGTTGTTGG
TCGATAGGTATGGATTTTTGTTCAACAACTTGATCACCGCGTCTTTGCAG
CTAGTGAGTACCCTCCCGTTGTTTCTGGTGTTGGGCCTGGTGCCCTGTGA
GAGGAATGGTGGGGGGGGAATGGAAGAAGAGGAGGAAGAGGGGTGGAGGA
AGGACAAGGAAGAAACAGAGATGGATTTGTCACATGGATGGGAATTAGGA
GCGAGTTTTTCGAATTTCTTTTTTGGGACCATCCCGCCGACATTGGGTAG
TGCAGGGAGTGTGAAGAAAGTATTGGAGGGATGGGGGGATGAAGAAAGTG
CGAGTGCTGCGTGGGATGAGCAGTTGCGGGAGCAGCGGGCGTGGTTTAAG
GGAGGAAGGGAGGAGGAGATGTCATTGCCATTGGATGGGGATGAGGACTT
GGCTGTGTTGGAGAGGGTTTTGGAGAGGGGAAGAAGCCGGGCGGGCACGG
TGGAAGACGTGGAGCTCTGA
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Coding sequence (CDS) from alignment at chr10:187949..188518+

>NO10G00560.1 ID=NO10G00560.1|Name=NO10G00560.1|organism=Nannochloropsis oceanica|type=CDS|length=570bp|location=Sequence derived from alignment at chr10:187949..188518+ (Nannochloropsis oceanica)
ATGGACTCTGTCCCAAAGGAAGACAGGGGGAAGTGGAATAGTCTGGAGAG
TGTCACCATGGCGACTTGGAGTGGCTCGGCCGTGATAGGAGGGTTGTTGG
TCGATAGGTATGGATTTTTGTTCAACAACTTGATCACCGCGTCTTTGCAG
CTAGTGAGTACCCTCCCGTTGTTTCTGGTGTTGGGCCTGGTGCCCTGTGA
GAGGAATGGTGGGGGGGGAATGGAAGAAGAGGAGGAAGAGGGGTGGAGGA
AGGACAAGGAAGAAACAGAGATGGATTTGTCACATGGATGGGAATTAGGA
GCGAGTTTTTCGAATTTCTTTTTTGGGACCATCCCGCCGACATTGGGTAG
TGCAGGGAGTGTGAAGAAAGTATTGGAGGGATGGGGGGATGAAGAAAGTG
CGAGTGCTGCGTGGGATGAGCAGTTGCGGGAGCAGCGGGCGTGGTTTAAG
GGAGGAAGGGAGGAGGAGATGTCATTGCCATTGGATGGGGATGAGGACTT
GGCTGTGTTGGAGAGGGTTTTGGAGAGGGGAAGAAGCCGGGCGGGCACGG
TGGAAGACGTGGAGCTCTGA
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Synonyms
Publications