NO10G00260, NO10G00260 (gene) Nannochloropsis oceanica

Overview
NameNO10G00260
Unique NameNO10G00260
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2271
Alignment locationchr10:90320..92590 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:90320..92590 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR037212Med7/Med21-like
IPR009244Mediatior_Med7
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription by RNA polymerase II
Homology
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BLAST of NO10G00260 vs. NCBI_GenBank
Match: EWM25259.1 (hypothetical protein Naga_101853g1 [Nannochloropsis gaditana])

HSP 1 Score: 100.1 bits (248), Expect = 8.700e-18
Identity = 57/80 (71.25%), Postives = 65/80 (81.25%), Query Frame = 0 
Query:   77 LPPPAIPLRGTPVSVFGFPVAHLDEEGYDPIIPPEARLYSSREVVVHDEEE---GXXXXXXERGRAVMVEMDYRGELEKL 154
            LPPPAIPLRG PV+VFGFPVA+LDEE YDPI+ PEARLYS REV V+DEEE    XXXXXX     V+VEMDY+ EL+K+
Sbjct:   85 LPPPAIPLRGKPVTVFGFPVAYLDEERYDPIVSPEARLYSCREVTVYDEEEXXXXXXXXXXXXXXXVIVEMDYKAELQKI 164
The following BLAST results are available for this feature:
BLAST of NO10G00260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25259.18.700e-1871.25hypothetical protein Naga_101853g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G00260.1NO10G00260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO10G00260.2NO10G00260.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|427007gene_4194Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101853g1gene5247Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G00260.1NO10G00260.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO10G00260.2NO10G00260.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G00260 ID=NO10G00260|Name=NO10G00260|organism=Nannochloropsis oceanica|type=gene|length=2271bp
ATGACGACCCTTCCAGCCGCAGCGGCAGGGGCCGCAGCAGGAGGAGGGAT
GGAATCAGAGGAAGCGCCTGAGTACCCTCCTCCGCCGGCCTACTTCCGCA
TGTTCGCGCCTCCCACCAAAGCTCACGAGGACGAGGACGAAGACGAGGAC
GAGGACGAAGACGAGGACGAGGAGGGCGTACGAACAGGCAAGGGAGAAGG
AGAGGCAGGGGAGGAAGACAATTTTCCGTTGCCTCCACCAGCAATTCCAT
TGAGGGGCACGCCTGTCTCAGTGTTTGGCTTTCCGGTGGCGCATTTGGAC
GAGgtacgggcttgggggagggagggaaggaggaagagagggagggaggg
aaggaggaagaatgggagggaggaagggagggagggtagaggtgacttgg
cgaggtgatggacgggttaattttcgtagaggatttggaatgtatcctcc
ttacttttgttttagcaggtccgtcgcgggtgggaaagggagggagggag
ggagggagggagggagtaggggtgaacgaggaggaatagtgcaagtgcct
accaagcaccaggcggtggaaaggagcaggtaatgggaaggatgggaaga
ccttgtgaacgtcactgatgatttaaatatcgattagtctttctgaaaat
tcatgcgggcgcttggcttgctccaggcgcccggatctgtagagaaacac
ttcctttgcctgagacgtctcagtttgatctatttggggtcttggtctat
cctaattcgatttacagcgaaccacatctgtgaggttaccattcatgcac
tagattccgacattcgactctgcggctatatgatcgttcttcctccttcc
ctccctcccaccctgtgtagtatcatccaaaaccggaaaccctcgccatt
tcaaagcgaggggatatcgacccattttctctgagttagcctccctcctt
ccctaccgtcttccctccccccttcctttcccagGAAGGGTACGACCCGA
TAATCCCTCCCGAGGCCCGCCTCTACTCGAGCCGGGAGGTGGTGGTGCAC
GACGAGGAGGAGGGCGAGGAGGAGGGCGGGCGGGAGAGAGGGAGGGCGGT
GATGGTGGAGATGGACTATAGAGGAGAGTTGGAGAAGCTGCGGAAAATGC
TGGCGGAGAAGGTGTTAGGAGTGATGGAGGGGTTGAGGACGGGGAAGAGG
GAGGGATCTGACTGgtacgtccgcttggggggatgaaggagggagggagg
gagggagggagggagggagggatggaaggatggatgacaagacagccatc
cgctcgcatcaccgtcctctcttccgtcctctcttccatccctccctccc
tccctccctccctccctccctccctccctccctccctccctccctagCAA
TGCCCTGCTGGGGGAAATTGGCCAGGTCATCGACAACATGTACGACGTCT
TGAGCGCCTACCGACAGCAGCAGgtagggagggagggagggagggttgaa
aactgggattgattggttgtcgcatcgcgcctagcatggaaggagtgatg
acggggcggaaggagggtgggtatggatatgggagggatgggaggcggag
ggggtctttgtgagggagggacggaacgagggagggcttctatgtgcgaa
ggacactggggtcagccagagacgagcgaaagcgatgaaaaactcatctt
ttcctccctccctccctccctccctccctccctccctccctccctccctc
cctccctccctccctccctccctccctccctccctccctccctcctccct
ccctccctccctccctccctccctccctccctccctccctccctccctcc
tccctccctccctccctccctccctccctccctccctccctccctccctc
cctccctccctccctccctccctccctccctccctccctccctccctccc
tccctccctccctccctccctccctccctccctccctccctccctccctc
cctccctccctccctccctccctccctcccctcagACGCTCTTACAAATG
GTCGAGCGGATGGAGTGCCAAATTCAGGAGAAACGAGAAGCCATCCGCTC
CCTACAAACGCAGATGTGCGACTCAGCAACAGCGGCAGAAGAAGCCGAGA
GGTCATTGCGCGAGTCGTGGGAAAAAATGGTGGAGGGAGGGAGGGAGGGA
GGGAAGGATGGAGGGAAGGCATGAAGGTACGCGATAATCACATGTACAGC
TTGTCAGGAGAAAAGGAAAAT
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protein sequence of NO10G00260.1

>NO10G00260.1-protein ID=NO10G00260.1-protein|Name=NO10G00260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=216bp
MTTLPAAAAGAAAGGGMESEEAPEYPPPPAYFRMFAPPTKAHEDEDEDED
EDEDEDEEGVRTGKGEGEAGEEDNFPLPPPAIPLRGTPVSVFGFPVAHLD
EEGYDPIIPPEARLYSSREVVVHDEEEGEEEGGRERGRAVMVEMDYRGEL
EKLRKMLAEKVLGVMEGLRTGKREGSDCNALLGEIGQVIDNMYDVLSAYR
QQQVGREGGRVENWD*
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protein sequence of NO10G00260.2

>NO10G00260.2-protein ID=NO10G00260.2-protein|Name=NO10G00260.2|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MTTLPAAAAGAAAGGGMESEEAPEYPPPPAYFRMFAPPTKAHEDEDEDED
EDEDEDEEGVRTGKGEGEAGEEDNFPLPPPAIPLRGTPVSVFGFPVAHLD
EEGYDPIIPPEARLYSSREVVVHDEEEGEEEGGRERGRAVMVEMDYRGEL
EKLRKMLAEKVLGVMEGLRTGKREGSDCNALLGEIGQVIDNMYDVLSAYR
QQQTLLQMVERMECQIQEKREAIRSLQTQMCDSATAAEEAERSLRESWEK
MVEGGREGGKDGGKA*
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Synonyms
Publications