NO10G00210, NO10G00210 (gene) Nannochloropsis oceanica

Overview
NameNO10G00210
Unique NameNO10G00210
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1495
Alignment locationchr10:72465..73959 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:72465..73959 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO10G00210 vs. NCBI_GenBank
Match: XP_005853831.1 (hypothetical protein NGA_0429201 [Nannochloropsis gaditana CCMP526] >EKU22527.1 hypothetical protein NGA_0429201 [Nannochloropsis gaditana CCMP526] >EWM25246.1 hypothetical protein Naga_100571g2 [Nannochloropsis gaditana])

HSP 1 Score: 278.5 bits (711), Expect = 2.000e-71
Identity = 145/228 (63.60%), Postives = 175/228 (76.75%), Query Frame = 0
Query:   14 VLLVLLALSGTHAFFLPVPAVSSS-MTSTTRLHSGIKGVETFDGAFTLSPESESVLFDFLQCDDMKNEVCKQAKCSGARFTGQLFQPVPYSPGTPIGMPREFEDFHLNPSYAICNVPPTVMFKAKIFKPPRLCAVFAIEGLDPEEKDKIMEKAKARMDLQALSAARLXXXXXXXXXXXXXXXXXXLPFLKGQPVEEDWSKVGASLKEL-MSEEEREAAEEAALDAMVV 240
            +LLV   LS ++AF +P+PA++S    S++ L  G++GVETFDGAFTLSPESE VL  +++C+DMK EVCKQAKC+ ARFTGQLFQPVPYSPGTP+GMPREFEDFHLNPSYAICNVPPTVMFKAKIFKPPRLCAVF IEGLDP+E+ KI+EKA+ARMDLQA +AA                    +  LKG P EE+W+ VG +L E+ + E+  E  +EAALDAMVV
Sbjct:   13 LLLVATVLSVSNAFVVPMPAIASKPPASSSTLFGGLRGVETFDGAFTLSPESEGVLVGYMECEDMKKEVCKQAKCTSARFTGQLFQPVPYSPGTPLGMPREFEDFHLNPSYAICNVPPTVMFKAKIFKPPRLCAVFTIEGLDPDEEKKILEKARARMDLQAQAAAH----QPMEEKDDGSEEKRPVTVLKGSPKEENWNGVGKALHEVALGEKAGEEEDEAALDAMVV 236          
BLAST of NO10G00210 vs. NCBI_GenBank
Match: CBJ26188.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 123.6 bits (309), Expect = 8.100e-25
Identity = 58/122 (47.54%), Postives = 79/122 (64.75%), Query Frame = 0
Query:   44 LHSGIKGVETFDGAFTLSPESESVLFDFLQCDDMKNEVCKQAKCSGARFTGQLFQPVPYSPGTPIGMPREFED-FHLNPSYAICNVPPTVMFKAKIFKPPRLCAVFAIEGLDPEEKDKIMEK 165
            L   I+ VE+F+  F L  ++ + L  +L+  DM  EVCKQ  C  A + G++FQPVPYS  TP GMP++ E+ F LN  Y I N+PP VMF AKIFKP RLCAV+ ++GL  + K  + E+
Sbjct:   59 LSMAIRAVESFNADFELEEKTAATLDGYLRHKDMIAEVCKQFDCESAEYVGEIFQPVPYSQATPQGMPKDIEEKFFLNEQYGIANIPPVVMFNAKIFKPSRLCAVYKVDGLSEDAKAVLNER 180          
BLAST of NO10G00210 vs. NCBI_GenBank
Match: WP_017659898.1 (hypothetical protein [Geitlerinema sp. PCC 7105])

HSP 1 Score: 122.9 bits (307), Expect = 1.400e-24
Identity = 54/101 (53.47%), Postives = 71/101 (70.30%), Query Frame = 0
Query:   48 IKGVETFDGAFTLSPESESVLFDFLQCDDMKNEVCKQAKCSGARFTGQLFQPVPYSPGTPIGMPREFEDFHLNPSYAICNVPPTVMFKAKIFKPPRLCAVF 149
            +K V+ FD  F+L P ++  LF  L+ D    ++C+Q  C+GA FT QLFQP+PYS  TP GMP+EFE +H + SY + NVPP  MF+AKIFKP RLCAV+
Sbjct:    3 LKIVQNFDSRFSLEPNAKKTLFQLLKSDRFLEQICQQCCCNGAEFTEQLFQPIPYSIETPKGMPKEFEKYHESDSYLLVNVPPPFMFEAKIFKPSRLCAVY 103          
BLAST of NO10G00210 vs. NCBI_GenBank
Match: WP_073071864.1 (hypothetical protein [Phormidesmis priestleyi] >PSB19435.1 hypothetical protein C7B65_10970 [Phormidesmis priestleyi ULC007])

HSP 1 Score: 120.6 bits (301), Expect = 6.900e-24
Identity = 54/102 (52.94%), Postives = 69/102 (67.65%), Query Frame = 0
Query:   47 GIKGVETFDGAFTLSPESESVLFDFLQCDDMKNEVCKQAKCSGARFTGQLFQPVPYSPGTPIGMPREFEDFHLNPSYAICNVPPTVMFKAKIFKPPRLCAVF 149
            GIK +E FD +F+L PE ++ LF+ L+ +    +V +  KC    FT  LFQPVPY+  TP GMP EFE FH +  YAI NVPP  MFKAK+FKP RLCA++
Sbjct:    2 GIKIIENFDSSFSLDPEVKTALFELLKSEAFLQQVAQALKCDQVEFTELLFQPVPYTTATPKGMPAEFEKFHNSADYAIVNVPPNFMFKAKVFKPSRLCAIY 103          
BLAST of NO10G00210 vs. NCBI_GenBank
Match: WP_015214667.1 (hypothetical protein [Anabaena cylindrica] >AFZ58032.1 hypothetical protein Anacy_2590 [Anabaena cylindrica PCC 7122] >BAY05002.1 hypothetical protein NIES19_42710 [Anabaena cylindrica PCC 7122])

HSP 1 Score: 120.2 bits (300), Expect = 9.000e-24
Identity = 51/101 (50.50%), Postives = 68/101 (67.33%), Query Frame = 0
Query:   48 IKGVETFDGAFTLSPESESVLFDFLQCDDMKNEVCKQAKCSGARFTGQLFQPVPYSPGTPIGMPREFEDFHLNPSYAICNVPPTVMFKAKIFKPPRLCAVF 149
            +K V+ FD +FTL+PE++  LF  L  +   +++C+  +C    FT  LFQPVPYSP TP GMP EFE +H +  Y I NVPP  MF AKIF+P RLCA++
Sbjct:    3 LKIVQNFDSSFTLAPEAQETLFKLLTSESFLSQICQNWQCEKIEFTEMLFQPVPYSPATPKGMPAEFEQYHKSEDYTIINVPPNFMFNAKIFRPSRLCAIY 103          
BLAST of NO10G00210 vs. NCBI_GenBank
Match: PPT05944.1 (hypothetical protein CKA32_002447 [Geitlerinema sp. FC II])

HSP 1 Score: 120.2 bits (300), Expect = 9.000e-24
Identity = 53/101 (52.48%), Postives = 70/101 (69.31%), Query Frame = 0
Query:   48 IKGVETFDGAFTLSPESESVLFDFLQCDDMKNEVCKQAKCSGARFTGQLFQPVPYSPGTPIGMPREFEDFHLNPSYAICNVPPTVMFKAKIFKPPRLCAVF 149
            +K V+ FD  F+L P ++  LF  L+ D    ++C+Q  C+G  FT QLFQPVPYS  TP GMP+EFE +H + SY + NVPP  MF++KIFKP RLCAV+
Sbjct:    3 LKIVQNFDSRFSLEPNAKKTLFQLLKSDRFLAQICQQCGCNGVEFTEQLFQPVPYSIETPKGMPKEFEKYHESDSYLLVNVPPPFMFESKIFKPSRLCAVY 103          
BLAST of NO10G00210 vs. NCBI_GenBank
Match: WP_006099972.1 (hypothetical protein [Coleofasciculus chthonoplastes] >EDX77015.1 hypothetical protein MC7420_2018 [Coleofasciculus chthonoplastes PCC 7420])

HSP 1 Score: 119.8 bits (299), Expect = 1.200e-23
Identity = 54/101 (53.47%), Postives = 67/101 (66.34%), Query Frame = 0
Query:   48 IKGVETFDGAFTLSPESESVLFDFLQCDDMKNEVCKQAKCSGARFTGQLFQPVPYSPGTPIGMPREFEDFHLNPSYAICNVPPTVMFKAKIFKPPRLCAVF 149
            +K V  FDG+F L P++++ LF  L  +  + +V  Q  C    FT  LFQPVPYS GTP GMPREFE +H +  YAI NVPP  MFKAKIF P RLCA++
Sbjct:    4 LKIVNNFDGSFVLEPDAQTHLFSLLNGESFRQQVAGQLHCQDLEFTELLFQPVPYSEGTPKGMPREFEQYHESDDYAIINVPPNFMFKAKIFNPSRLCAIY 104          
BLAST of NO10G00210 vs. NCBI_GenBank
Match: WP_096558725.1 (hypothetical protein [Nostoc sp. NIES-4103] >BAZ53311.1 hypothetical protein NIES4103_59850 [Nostoc sp. NIES-4103])

HSP 1 Score: 119.8 bits (299), Expect = 1.200e-23
Identity = 54/101 (53.47%), Postives = 67/101 (66.34%), Query Frame = 0
Query:   48 IKGVETFDGAFTLSPESESVLFDFLQCDDMKNEVCKQAKCSGARFTGQLFQPVPYSPGTPIGMPREFEDFHLNPSYAICNVPPTVMFKAKIFKPPRLCAVF 149
            IK V++FD +FTL PE +  LF  L  +   N++C+Q +C    FT  LFQPVPYS  TP GMP EFE +H +  Y I NVPP  MF AKIFKP RLCA++
Sbjct:    3 IKIVQSFDSSFTLEPELQETLFKLLTSESFVNQMCQQLQCEKVEFTKLLFQPVPYSLATPKGMPTEFEQYHESDDYIIINVPPNFMFSAKIFKPSRLCAIY 103          
BLAST of NO10G00210 vs. NCBI_GenBank
Match: WP_015160325.1 (hypothetical protein [Chamaesiphon minutus] >AFY94184.1 hypothetical protein Cha6605_3170 [Chamaesiphon minutus PCC 6605])

HSP 1 Score: 119.4 bits (298), Expect = 1.500e-23
Identity = 54/101 (53.47%), Postives = 67/101 (66.34%), Query Frame = 0
Query:   48 IKGVETFDGAFTLSPESESVLFDFLQCDDMKNEVCKQAKCSGARFTGQLFQPVPYSPGTPIGMPREFEDFHLNPSYAICNVPPTVMFKAKIFKPPRLCAVF 149
            IK +E FDG+FTL  ++ S+LF  L  +    +V +QA C    FT  LFQPVPYS GTP GMP E E +H +P Y I NVPP  MF AKIF+P RLCA++
Sbjct:    3 IKVIENFDGSFTLDQQARSILFGLLTSEKFLQQVAEQANCQSLTFTEILFQPVPYSAGTPKGMPAEIERYHQSPEYLIINVPPNFMFAAKIFQPSRLCAIY 103          
BLAST of NO10G00210 vs. NCBI_GenBank
Match: WP_096830444.1 (hypothetical protein [Tychonema bourrellyi] >PHX54025.1 hypothetical protein CP500_018300 [Tychonema bourrellyi FEM_GT703])

HSP 1 Score: 119.4 bits (298), Expect = 1.500e-23
Identity = 51/104 (49.04%), Postives = 70/104 (67.31%), Query Frame = 0
Query:   47 GIKGVETFDGAFTLSPESESVLFDFLQCDDMKNEVCKQAKCSGARFTGQLFQPVPYSPGTPIGMPREFEDFHLNPSYAICNVPPTVMFKAKIFKPPRLCAVFAI 151
            G+K +E++DG+F + PE+++VL   L  +    ++  Q KCS   FT  LFQPVPYS  TP GMP EFE +H    +AI NVPP  MF+AK+FKP RLCA++ +
Sbjct:    2 GLKIIESYDGSFVIEPEAKAVLLSLLTAESFLQQIASQLKCSRLEFTDLLFQPVPYSSETPKGMPAEFEKYHGKSDFAIVNVPPNFMFQAKVFKPSRLCAIYRV 105          
The following BLAST results are available for this feature:
BLAST of NO10G00210 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005853831.12.000e-7163.60hypothetical protein NGA_0429201 [Nannochloropsis ... [more]
CBJ26188.18.100e-2547.54conserved unknown protein [Ectocarpus siliculosus][more]
WP_017659898.11.400e-2453.47hypothetical protein [Geitlerinema sp. PCC 7105][more]
WP_073071864.16.900e-2452.94hypothetical protein [Phormidesmis priestleyi] >PS... [more]
WP_015214667.19.000e-2450.50hypothetical protein [Anabaena cylindrica] >AFZ580... [more]
PPT05944.19.000e-2452.48hypothetical protein CKA32_002447 [Geitlerinema sp... [more]
WP_006099972.11.200e-2353.47hypothetical protein [Coleofasciculus chthonoplast... [more]
WP_096558725.11.200e-2353.47hypothetical protein [Nostoc sp. NIES-4103] >BAZ53... [more]
WP_015160325.11.500e-2353.47hypothetical protein [Chamaesiphon minutus] >AFY94... [more]
WP_096830444.11.500e-2349.04hypothetical protein [Tychonema bourrellyi] >PHX54... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL055nonsL055Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR091ncniR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007681NSK007681Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G00210.1NO10G00210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|386916gene_10802Nannochloropsis oceanica (N. oceanica CCMP1779)gene
jgi.p|Nanoce1779_2|427428gene_4201Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100571g2gene5260Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G00210.1NO10G00210.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G00210 ID=NO10G00210|Name=NO10G00210|organism=Nannochloropsis oceanica|type=gene|length=1495bp
AGCCTCGTCGCTTTGAGTCGCTTACTTTGGCTCTTAGCCCCACGCTTCGT
CTCGCTCTAGCCGCTCCTCGTCCCGCCGGTCTATCATGCTTGCTGCAAGC
ATGTCCGCCCCTGTTCTCCTCCTCGTCCTCCTCGTCCTCCTGGCCCTCAG
CGGCACGCATGCTTTCTTCCTTCCAGTGCCCGCTGTTTCTTCCTCGATGA
CGAGCACCACCCGGCTGCACAGTGGCATCAAGGGCGTGGAGACGTTCGAT
GGTGCCTTTACCCTCTCGCCAGAGTCCGAAAGCGTCCTATTTGACTTTTT
GCAGTGCGATgtaagtggttggggaggagaacggaggggggagggagggg
gtgggggagagggaggagagagatgacgaaaaaaaatgttgctcagatgg
ataaaggtatcaggtgggaggagaggacggtcaggagacaggtgtgaagg
ggtgaagcaggacacggtcggtgcccatgtcgcttgtcaatgaaaggctg
tggtctccagctcctccattgtgcttattgtctttcattaaatctcccct
ctctctctacctctctttccaccaactgtacccacctgccctcctttttg
cagGACATGAAGAACGAGGTGTGCAAGCAAGCCAAGTGCTCGGGCGCCCG
ATTCACGGGGCAGCTCTTCCAACCCGTGCCTTATTCTCCCGGGACGCCCA
TCGgtagggaggaagaggaggaggacgggaggcattgggcctggaagagg
agatatgatcagaggattgagaagataaatttgagaattgagaagcaagg
attcaaagagagggaggctttggtgtcgccaatggtctttctcgcctctc
aaatccctcttcatgcctttccccccctccctgcctcctcttcccagGGA
TGCCCCGTGAATTCGAGGACTTCCACCTCAATCCGTCCTATGCCATCTGC
AATGTGCCTCCCACGGTCATGTTCAAGGCCAAGATCTTCAAGCCCCCCCG
CCTTTGCGCCGTCTTTGCCATTGAAGgtagttaaggctcaccggccctct
ctccctccctccctccctccctcgctcgcttgaattgttttctccatcgt
ctgcactgacaggtcacaatgcacgccactcaacggcgcccctattttcc
tccctccctccctcccttcctcccaccccccctccctcccctccagGCCT
TGACCCTGAGGAAAAAGATAAGATAATGGAAAAGGCCAAGGCCCGGATGG
ACCTACAGGCGCTTTCAGCCGCCCGCCTGGCCACGGAGAGGGCGAAGGAG
GGAGGGAAGGAGGGAGGGAAGGAGGAGAGCAAGCTCCCTTTTCTCAAGGG
GCAGCCAGTGGAGGAGGACTGGAGCAAGGTAGGTGCGTCGTTGAAGGAGT
TGATGAGCGAGGAGGAGAGGGAGGCGGCGGAGGAGGCGGCGTTGGACGCT
ATGGTGGTTTAAGGCAGGAGGGGGGAGGGAAGGAGGGAGGGAGGG
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protein sequence of NO10G00210.1

>NO10G00210.1-protein ID=NO10G00210.1-protein|Name=NO10G00210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MLAASMSAPVLLLVLLVLLALSGTHAFFLPVPAVSSSMTSTTRLHSGIKG
VETFDGAFTLSPESESVLFDFLQCDDMKNEVCKQAKCSGARFTGQLFQPV
PYSPGTPIGMPREFEDFHLNPSYAICNVPPTVMFKAKIFKPPRLCAVFAI
EGLDPEEKDKIMEKAKARMDLQALSAARLATERAKEGGKEGGKEESKLPF
LKGQPVEEDWSKVGASLKELMSEEEREAAEEAALDAMVV*
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Synonyms
Publications