NO10G00210.1, NO10G00210.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G00210.1
Unique NameNO10G00210.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length838
Alignment locationchr10:72465..73959 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:72465..73959 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO10G00210.1 vs.
Match: XP_005853831.1 (hypothetical protein NGA_0429201 [Nannochloropsis gaditana CCMP526]; EKU22527.1 hypothetical protein NGA_0429201 [Nannochloropsis gaditana CCMP526]; EWM25246.1 hypothetical protein Naga_100571g2 [Nannochloropsis gaditana])

HSP 1 Score: 284.6 bits (727), Expect = 2.800e-73
Identity = 148/228 (64.91%), Postives = 182/228 (79.82%), Query Frame = 0 
Query:   14 VLLVLLALSGTHAFFLPVPAVSSSM-TSTTRLHSGIKGVETFDGAFTLSPESESVLFDFLQCDDMKNEVCKQAKCSGARFTGQLFQPVPYSPGTPIGMPREFEDFHLNPSYAICNVPPTVMFKAKIFKPPRLCAVFAIEGLDPEEKDKIMEKAKARMDLQALSAARLATERAKEGGKEGGKEESKLPFLKGQPVEEDWSKVGASLKEL-MSEEEREAAEEAALDAMVV 240
            +LLV   LS ++AF +P+PA++S    S++ L  G++GVETFDGAFTLSPESE VL  +++C+DMK EVCKQAKC+ ARFTGQLFQPVPYSPGTP+GMPREFEDFHLNPSYAICNVPPTVMFKAKIFKPPRLCAVF IEGLDP+E+ KI+EKA+ARMDLQA +AA     +  E   +G +E+  +  LKG P EE+W+ VG +L E+ + E+  E  +EAALDAMVV
Sbjct:   13 LLLVATVLSVSNAFVVPMPAIASKPPASSSTLFGGLRGVETFDGAFTLSPESEGVLVGYMECEDMKKEVCKQAKCTSARFTGQLFQPVPYSPGTPLGMPREFEDFHLNPSYAICNVPPTVMFKAKIFKPPRLCAVFTIEGLDPDEEKKILEKARARMDLQAQAAA----HQPMEEKDDGSEEKRPVTVLKGSPKEENWNGVGKALHEVALGEKAGEEEDEAALDAMVV 236
The following BLAST results are available for this feature:
BLAST of NO10G00210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853831.12.800e-7364.91hypothetical protein NGA_0429201 [Nannochloropsis ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G00210NO10G00210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G00210.1NO10G00210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G00210.1.cds1NO10G00210.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00210.1.cds2NO10G00210.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00210.1.cds3NO10G00210.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00210.1.cds4NO10G00210.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G00210.1 ID=NO10G00210.1|Name=NO10G00210.1|organism=Nannochloropsis oceanica|type=mRNA|length=838bp
AGCCTCGTCGCTTTGAGTCGCTTACTTTGGCTCTTAGCCCCACGCTTCGT
CTCGCTCTAGCCGCTCCTCGTCCCGCCGGTCTATCATGCTTGCTGCAAGC
ATGTCCGCCCCTGTTCTCCTCCTCGTCCTCCTCGTCCTCCTGGCCCTCAG
CGGCACGCATGCTTTCTTCCTTCCAGTGCCCGCTGTTTCTTCCTCGATGA
CGAGCACCACCCGGCTGCACAGTGGCATCAAGGGCGTGGAGACGTTCGAT
GGTGCCTTTACCCTCTCGCCAGAGTCCGAAAGCGTCCTATTTGACTTTTT
GCAGTGCGATGACATGAAGAACGAGGTGTGCAAGCAAGCCAAGTGCTCGG
GCGCCCGATTCACGGGGCAGCTCTTCCAACCCGTGCCTTATTCTCCCGGG
ACGCCCATCGGGATGCCCCGTGAATTCGAGGACTTCCACCTCAATCCGTC
CTATGCCATCTGCAATGTGCCTCCCACGGTCATGTTCAAGGCCAAGATCT
TCAAGCCCCCCCGCCTTTGCGCCGTCTTTGCCATTGAAGGCCTTGACCCT
GAGGAAAAAGATAAGATAATGGAAAAGGCCAAGGCCCGGATGGACCTACA
GGCGCTTTCAGCCGCCCGCCTGGCCACGGAGAGGGCGAAGGAGGGAGGGA
AGGAGGGAGGGAAGGAGGAGAGCAAGCTCCCTTTTCTCAAGGGGCAGCCA
GTGGAGGAGGACTGGAGCAAGGTAGGTGCGTCGTTGAAGGAGTTGATGAG
CGAGGAGGAGAGGGAGGCGGCGGAGGAGGCGGCGTTGGACGCTATGGTGG
TTTAAGGCAGGAGGGGGGAGGGAAGGAGGGAGGGAGGG
back to top

protein sequence of NO10G00210.1

>NO10G00210.1-protein ID=NO10G00210.1-protein|Name=NO10G00210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MLAASMSAPVLLLVLLVLLALSGTHAFFLPVPAVSSSMTSTTRLHSGIKG
VETFDGAFTLSPESESVLFDFLQCDDMKNEVCKQAKCSGARFTGQLFQPV
PYSPGTPIGMPREFEDFHLNPSYAICNVPPTVMFKAKIFKPPRLCAVFAI
EGLDPEEKDKIMEKAKARMDLQALSAARLATERAKEGGKEGGKEESKLPF
LKGQPVEEDWSKVGASLKELMSEEEREAAEEAALDAMVV*
back to top

mRNA from alignment at chr10:72465..73959-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G00210.1 ID=NO10G00210.1|Name=NO10G00210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1495bp|location=Sequence derived from alignment at chr10:72465..73959- (Nannochloropsis oceanica)
AGCCTCGTCGCTTTGAGTCGCTTACTTTGGCTCTTAGCCCCACGCTTCGT
CTCGCTCTAGCCGCTCCTCGTCCCGCCGGTCTATCATGCTTGCTGCAAGC
ATGTCCGCCCCTGTTCTCCTCCTCGTCCTCCTCGTCCTCCTGGCCCTCAG
CGGCACGCATGCTTTCTTCCTTCCAGTGCCCGCTGTTTCTTCCTCGATGA
CGAGCACCACCCGGCTGCACAGTGGCATCAAGGGCGTGGAGACGTTCGAT
GGTGCCTTTACCCTCTCGCCAGAGTCCGAAAGCGTCCTATTTGACTTTTT
GCAGTGCGATGTAAGTGGTTGGGGAGGAGAACGGAGGGGGGAGGGAGGGG
GTGGGGGAGAGGGAGGAGAGAGATGACGAAAAAAAATGTTGCTCAGATGG
ATAAAGGTATCAGGTGGGAGGAGAGGACGGTCAGGAGACAGGTGTGAAGG
GGTGAAGCAGGACACGGTCGGTGCCCATGTCGCTTGTCAATGAAAGGCTG
TGGTCTCCAGCTCCTCCATTGTGCTTATTGTCTTTCATTAAATCTCCCCT
CTCTCTCTACCTCTCTTTCCACCAACTGTACCCACCTGCCCTCCTTTTTG
CAGGACATGAAGAACGAGGTGTGCAAGCAAGCCAAGTGCTCGGGCGCCCG
ATTCACGGGGCAGCTCTTCCAACCCGTGCCTTATTCTCCCGGGACGCCCA
TCGGTAGGGAGGAAGAGGAGGAGGACGGGAGGCATTGGGCCTGGAAGAGG
AGATATGATCAGAGGATTGAGAAGATAAATTTGAGAATTGAGAAGCAAGG
ATTCAAAGAGAGGGAGGCTTTGGTGTCGCCAATGGTCTTTCTCGCCTCTC
AAATCCCTCTTCATGCCTTTCCCCCCCTCCCTGCCTCCTCTTCCCAGGGA
TGCCCCGTGAATTCGAGGACTTCCACCTCAATCCGTCCTATGCCATCTGC
AATGTGCCTCCCACGGTCATGTTCAAGGCCAAGATCTTCAAGCCCCCCCG
CCTTTGCGCCGTCTTTGCCATTGAAGGTAGTTAAGGCTCACCGGCCCTCT
CTCCCTCCCTCCCTCCCTCCCTCGCTCGCTTGAATTGTTTTCTCCATCGT
CTGCACTGACAGGTCACAATGCACGCCACTCAACGGCGCCCCTATTTTCC
TCCCTCCCTCCCTCCCTTCCTCCCACCCCCCCTCCCTCCCCTCCAGGCCT
TGACCCTGAGGAAAAAGATAAGATAATGGAAAAGGCCAAGGCCCGGATGG
ACCTACAGGCGCTTTCAGCCGCCCGCCTGGCCACGGAGAGGGCGAAGGAG
GGAGGGAAGGAGGGAGGGAAGGAGGAGAGCAAGCTCCCTTTTCTCAAGGG
GCAGCCAGTGGAGGAGGACTGGAGCAAGGTAGGTGCGTCGTTGAAGGAGT
TGATGAGCGAGGAGGAGAGGGAGGCGGCGGAGGAGGCGGCGTTGGACGCT
ATGGTGGTTTAAGGCAGGAGGGGGGAGGGAAGGAGGGAGGGAGGG
back to top

Coding sequence (CDS) from alignment at chr10:72465..73959-

>NO10G00210.1 ID=NO10G00210.1|Name=NO10G00210.1|organism=Nannochloropsis oceanica|type=CDS|length=720bp|location=Sequence derived from alignment at chr10:72465..73959- (Nannochloropsis oceanica)
ATGCTTGCTGCAAGCATGTCCGCCCCTGTTCTCCTCCTCGTCCTCCTCGT
CCTCCTGGCCCTCAGCGGCACGCATGCTTTCTTCCTTCCAGTGCCCGCTG
TTTCTTCCTCGATGACGAGCACCACCCGGCTGCACAGTGGCATCAAGGGC
GTGGAGACGTTCGATGGTGCCTTTACCCTCTCGCCAGAGTCCGAAAGCGT
CCTATTTGACTTTTTGCAGTGCGATGACATGAAGAACGAGGTGTGCAAGC
AAGCCAAGTGCTCGGGCGCCCGATTCACGGGGCAGCTCTTCCAACCCGTG
CCTTATTCTCCCGGGACGCCCATCGGGATGCCCCGTGAATTCGAGGACTT
CCACCTCAATCCGTCCTATGCCATCTGCAATGTGCCTCCCACGGTCATGT
TCAAGGCCAAGATCTTCAAGCCCCCCCGCCTTTGCGCCGTCTTTGCCATT
GAAGGCCTTGACCCTGAGGAAAAAGATAAGATAATGGAAAAGGCCAAGGC
CCGGATGGACCTACAGGCGCTTTCAGCCGCCCGCCTGGCCACGGAGAGGG
CGAAGGAGGGAGGGAAGGAGGGAGGGAAGGAGGAGAGCAAGCTCCCTTTT
CTCAAGGGGCAGCCAGTGGAGGAGGACTGGAGCAAGGTAGGTGCGTCGTT
GAAGGAGTTGATGAGCGAGGAGGAGAGGGAGGCGGCGGAGGAGGCGGCGT
TGGACGCTATGGTGGTTTAA
back to top
Synonyms
Publications