NO10G00110, NO10G00110 (gene) Nannochloropsis oceanica

Overview
NameNO10G00110
Unique NameNO10G00110
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length495
Alignment locationchr10:32085..32579 -

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Properties
Property NameValue
DescriptionTranscriptional coactivator pterin dehydratase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:32085..32579 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:00081244-alpha-hydroxytetrahydrobiopterin dehydratase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0006729tetrahydrobiopterin biosynthetic process
GO:0009987cellular process
GO:0009058biosynthetic process
Vocabulary: INTERPRO
TermDefinition
IPR036428PCD_sf
IPR001533Trans/pterin_deHydtase
Homology
BLAST of NO10G00110 vs. NCBI_GenBank
Match: WP_074315501.1 (4a-hydroxytetrahydrobiopterin dehydratase [Singulisphaera sp. GP187] >SIO60002.1 4a-hydroxytetrahydrobiopterin dehydratase [Singulisphaera sp. GP187])

HSP 1 Score: 119.8 bits (299), Expect = 8.100e-24
Identity = 55/111 (49.55%), Postives = 72/111 (64.86%), Query Frame = 0
Query:   34 TCSRDAHKHCVPCEGGLPAVPLERVQAVLPSLPLWKASDDHKRLSRAFIAKNFAAALAFLNAVGAVAEAEGHHPDLHLTSYREVEIVLYTHAVGGLTENDLIMAGLIDAVP 145
            T      K C PCEGG+P VP++  +A L  L  W+ + D  R+   + AKNF AA+ F N V  +AE +GHHPDLHL  YR V IVL+THA+GGL+END I+A  I+ +P
Sbjct:    5 TADELVRKTCSPCEGGIPPVPVDEAKAYLTHLEGWELAADGTRIKHTWTAKNFMAAIDFFNKVAELAELDGHHPDLHLEGYRNVTIVLWTHAIGGLSENDFILAAKINQIP 115          
BLAST of NO10G00110 vs. NCBI_GenBank
Match: WP_068846097.1 (4a-hydroxytetrahydrobiopterin dehydratase [Planctopirus sp. JC280] >ODA34626.1 pterin-4-alpha-carbinolamine dehydratase [Planctopirus sp. JC280])

HSP 1 Score: 118.6 bits (296), Expect = 1.800e-23
Identity = 53/101 (52.48%), Postives = 75/101 (74.26%), Query Frame = 0
Query:   41 KHCVPCEGGLPAVPLERVQAVLPSLPLWKASDDHKRLSRAFIAKNFAAALAFLNAVGAVAEAEGHHPDLHLTSYREVEIVLYTHAVGGLTENDLIMAGLID 142
            K C+PCEGG+P +    +   LP +P W+ SDD+K +SR++ A+NF +A+  LNA+  +AEAE HHPDLHLTSYR + + L+THA+ GL+ENDLI+A  I+
Sbjct:   30 KKCLPCEGGIPRLGPAEIATQLPLVPGWQVSDDNKMISRSWRARNFVSAMEQLNALADMAEAEQHHPDLHLTSYRHIRVDLWTHAIDGLSENDLILAAKIN 130          
BLAST of NO10G00110 vs. NCBI_GenBank
Match: WP_068130565.1 (4a-hydroxytetrahydrobiopterin dehydratase [Roseimaritima ulvae])

HSP 1 Score: 118.6 bits (296), Expect = 1.800e-23
Identity = 55/103 (53.40%), Postives = 71/103 (68.93%), Query Frame = 0
Query:   41 KHCVPCEGGLPAVPLERVQAVLPSLPLWKASDDHKRLSRAFIAKNFAAALAFLNAVGAVAEAEGHHPDLHLTSYREVEIVLYTHAVGGLTENDLIMAGLIDAV 144
            K C+PCEGG+PA+  ++V   L ++P W+  DD   + R +  KNF  A+  L  VG +AEAE HHPDLHLT YR V IVL THA+GGL+END I+A  IDA+
Sbjct:    9 KRCLPCEGGVPAMTKDQVARHLQAVPNWQVDDDQSAIRRTWKLKNFVEAMRLLQRVGELAEAEQHHPDLHLTGYRHVAIVLTTHAIGGLSENDFIVAAKIDAL 111          
BLAST of NO10G00110 vs. NCBI_GenBank
Match: WP_013564010.1 (4a-hydroxytetrahydrobiopterin dehydratase [Isosphaera pallida] >ADV61721.1 pterin-4-alpha-carbinolamine dehydratase [Isosphaera pallida ATCC 43644])

HSP 1 Score: 118.2 bits (295), Expect = 2.300e-23
Identity = 51/104 (49.04%), Postives = 72/104 (69.23%), Query Frame = 0
Query:   41 KHCVPCEGGLPAVPLERVQAVLPSLPLWKASDDHKRLSRAFIAKNFAAALAFLNAVGAVAEAEGHHPDLHLTSYREVEIVLYTHAVGGLTENDLIMAGLIDAVP 145
            K CVPCEGG+P +   + +A+    P W  S+D +++ R ++ +NF A + FLN V A+AE EGHHPDLHL  YR + I ++THA+ GL+END I+A  IDA+P
Sbjct:   13 KRCVPCEGGVPKLDRAQAEALRAQTPNWTLSEDGRKIRREWVVRNFMAGMDFLNKVAALAEEEGHHPDLHLVGYRHLAIEIWTHAIDGLSENDFILAAKIDALP 116          
BLAST of NO10G00110 vs. NCBI_GenBank
Match: WP_008666959.1 (4a-hydroxytetrahydrobiopterin dehydratase [Rhodopirellula europaea] >EMI26654.1 pterin-4-alpha-carbinolamine dehydratase [Rhodopirellula europaea SH398])

HSP 1 Score: 117.1 bits (292), Expect = 5.200e-23
Identity = 54/112 (48.21%), Postives = 74/112 (66.07%), Query Frame = 0
Query:   32 SETCSRDAHKHCVPCEGGLPAVPLERVQAVLPSLPLWKASDDHKRLSRAFIAKNFAAALAFLNAVGAVAEAEGHHPDLHLTSYREVEIVLYTHAVGGLTENDLIMAGLIDAV 144
            S+T +  + +HCVPCEGG+  + +E  +  L  LP W   ++ K++SR     +F  A+  LNA+  +AEAE HHPDLHLT YR + IVL THA+GGL+END +MA  ID V
Sbjct:    4 SKTSTDWSSRHCVPCEGGIDRIAVETAKQYLTELPNWSLDEEGKQISRKLNTGDFQTAVRHLNAIAELAEAEQHHPDLHLTGYRHLRIVLTTHAIGGLSENDFVMAARIDQV 115          
BLAST of NO10G00110 vs. NCBI_GenBank
Match: XP_002506409.1 (hypothetical protein MICPUN_64545 [Micromonas commoda] >ACO67667.1 hypothetical protein MICPUN_64545 [Micromonas commoda])

HSP 1 Score: 116.7 bits (291), Expect = 6.800e-23
Identity = 51/112 (45.54%), Postives = 73/112 (65.18%), Query Frame = 0
Query:   46 CEGGLPAVPLERVQAVLPSLPLWKASDDHKRLSRAFIAKNFAAALAFLNAVGAVAEAEGHHPDLHLTSYREVEIVLYTHAVGGLTENDLIMAGLIDAVPAVYSPKWLKEHPE 158
            C    P +  E VQ  L ++P W        +SR+F AKN+  A+ F+NA+ AVAE EGHHPD+HLT+YR+V +   THA+GGL+ +D ++A  +D +   YSPKWL+E+ E
Sbjct:   98 CSRDTPKLTAEEVQIRLKAVPTWTLDPSGAAISRSFTAKNWQCAVDFVNALSAVAEEEGHHPDVHLTNYRDVRVTASTHAIGGLSLHDFVLAAKLDTIDVTYSPKWLRENAE 209          
BLAST of NO10G00110 vs. NCBI_GenBank
Match: WP_076349719.1 (4a-hydroxytetrahydrobiopterin dehydratase [Paludisphaera borealis] >APW63366.1 Putative pterin-4-alpha-carbinolamine dehydratase [Paludisphaera borealis])

HSP 1 Score: 116.7 bits (291), Expect = 6.800e-23
Identity = 54/104 (51.92%), Postives = 71/104 (68.27%), Query Frame = 0
Query:   41 KHCVPCEGGLPAVPLERVQAVLPSLPLWKASDDHKRLSRAFIAKNFAAALAFLNAVGAVAEAEGHHPDLHLTSYREVEIVLYTHAVGGLTENDLIMAGLIDAVP 145
            K CVPCEG +P +  +  +A+L ++  W  S D +R+ R +IAKNF A + F   V A+AE+EGHHPDLHL  YR V I L+THA GGLTEND I+A  I+ +P
Sbjct:   12 KKCVPCEGDVPPLSPDEAKALLEAVADWSLSHDGQRIRREWIAKNFMAGIDFFEKVAALAESEGHHPDLHLEGYRNVAIELWTHAAGGLTENDFILAAKINEIP 115          
BLAST of NO10G00110 vs. NCBI_GenBank
Match: WP_092048364.1 (4a-hydroxytetrahydrobiopterin dehydratase [Planctomicrobium piriforme] >SFH82427.1 4a-hydroxytetrahydrobiopterin dehydratase [Planctomicrobium piriforme])

HSP 1 Score: 116.3 bits (290), Expect = 8.900e-23
Identity = 53/104 (50.96%), Postives = 69/104 (66.35%), Query Frame = 0
Query:   41 KHCVPCEGGLPAVPLERVQAVLPSLPLWKASDDHKRLSRAFIAKNFAAALAFLNAVGAVAEAEGHHPDLHLTSYREVEIVLYTHAVGGLTENDLIMAGLIDAVP 145
            KHCVPCEGG+P V     + +L  LP W+ + D   + R +  KNF A + FL+ V  VAEAE HHPD+HLT YR V + L THA+GGL+END I+A  I+ +P
Sbjct:   12 KHCVPCEGGVPKVDRPAAERLLKELPGWELASDGNLIRRKWTVKNFVAGMNFLSKVADVAEAEQHHPDIHLTGYRNVSVELMTHAIGGLSENDFILAAKINDLP 115          
BLAST of NO10G00110 vs. NCBI_GenBank
Match: PIQ85812.1 (pterin-4-alpha-carbinolamine dehydratase [Candidatus Omnitrophica bacterium CG11_big_fil_rev_8_21_14_0_20_45_26] >PIW65503.1 pterin-4-alpha-carbinolamine dehydratase [Candidatus Omnitrophica bacterium CG12_big_fil_rev_8_21_14_0_65_45_16])

HSP 1 Score: 115.9 bits (289), Expect = 1.200e-22
Identity = 51/104 (49.04%), Postives = 73/104 (70.19%), Query Frame = 0
Query:   41 KHCVPCEGGLPAVPLERVQAVLPSLPLWKASDDHKRLSRAFIAKNFAAALAFLNAVGAVAEAEGHHPDLHLTSYREVEIVLYTHAVGGLTENDLIMAGLIDAVP 145
            K C+PCEGG+P +   + +  L S+P W+ + D   ++  ++ K+F AAL F+NA+G +AE EGHHPDLHLT YR + I L THA+GGL+END I+A  I+ +P
Sbjct:   12 KKCLPCEGGVPKLTKAQAEQYLSSVPGWQLNRDGTSMNAQYVMKDFQAALNFINAIGKIAEDEGHHPDLHLTGYRRLSIDLNTHAIGGLSENDFILAAKINQLP 115          
BLAST of NO10G00110 vs. NCBI_GenBank
Match: XP_005785851.1 (hypothetical protein EMIHUDRAFT_59448, partial [Emiliania huxleyi CCMP1516] >EOD33422.1 hypothetical protein EMIHUDRAFT_59448, partial [Emiliania huxleyi CCMP1516])

HSP 1 Score: 115.2 bits (287), Expect = 2.000e-22
Identity = 55/98 (56.12%), Postives = 70/98 (71.43%), Query Frame = 0
Query:   46 CEGGLPAVPLERVQAVLPSLPLWKASDDHKRLSRAFIAKNFAAALAFLNAVGAVAEAEGHHPDLHLTSYREVEIVLYTHAVGGLTENDLIMAGLIDAV 144
            C    P +P + V A LP LP W  SDD K +SR+F+AKN+ AA+AF+NA   V E EGHHPDLHLT++R+V +VL THAVGGLT  DL++A  +D V
Sbjct:    1 CGRDTPLLPADVVAARLPFLPDWALSDDGKAISRSFVAKNWGAAMAFINAASEVCEDEGHHPDLHLTNWRDVRVVLSTHAVGGLTLPDLVLAAKLDTV 98          
The following BLAST results are available for this feature:
BLAST of NO10G00110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
WP_074315501.18.100e-2449.554a-hydroxytetrahydrobiopterin dehydratase [Singuli... [more]
WP_068846097.11.800e-2352.484a-hydroxytetrahydrobiopterin dehydratase [Plancto... [more]
WP_068130565.11.800e-2353.404a-hydroxytetrahydrobiopterin dehydratase [Roseima... [more]
WP_013564010.12.300e-2349.044a-hydroxytetrahydrobiopterin dehydratase [Isospha... [more]
WP_008666959.15.200e-2348.214a-hydroxytetrahydrobiopterin dehydratase [Rhodopi... [more]
XP_002506409.16.800e-2345.54hypothetical protein MICPUN_64545 [Micromonas comm... [more]
WP_076349719.16.800e-2351.924a-hydroxytetrahydrobiopterin dehydratase [Paludis... [more]
WP_092048364.18.900e-2350.964a-hydroxytetrahydrobiopterin dehydratase [Plancto... [more]
PIQ85812.11.200e-2249.04pterin-4-alpha-carbinolamine dehydratase [Candidat... [more]
XP_005785851.12.000e-2256.12hypothetical protein EMIHUDRAFT_59448, partial [Em... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL055nonsL055Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR091ncniR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007668NSK007668Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G00110.1NO10G00110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612955gene_10813Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100089g9gene5271Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G00110.1NO10G00110.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G00110 ID=NO10G00110|Name=NO10G00110|organism=Nannochloropsis oceanica|type=gene|length=495bp
ATGCACCTAAACCTCGGCGTTTCCCTTATTTTTATCGTAATTGCCACCGC
TGCTGCGTTTTTGTCGTCTGCCACCAGTAGCTCCAATAGCATGAGCGAGA
CCTGTTCCCGGGACGCTCACAAGCATTGCGTCCCATGCGAAGGCGGCCTC
CCCGCCGTACCGCTTGAGCGCGTGCAGGCTGTCCTTCCCTCTCTGCCCTT
GTGGAAGGCAAGCGACGACCACAAGCGCCTGTCCCGTGCGTTCATCGCCA
AGAACTTCGCTGCCGCACTTGCTTTCCTTAACGCTGTGGGGGCCGTGGCC
GAAGCGGAAGGCCACCACCCGGACTTACACTTGACGAGCTATAGGGAGGT
GGAAATTGTGTTGTACACGCATGCCGTGGGAGGACTGACGGAGAATGATT
TGATTATGGCGGGGTTGATCGACGCAGTTCCTGCAGTGTATAGCCCCAAA
TGGTTGAAGGAGCATCCGGAGGCAGAAAGCACGGCGGCTAAGTAA
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protein sequence of NO10G00110.1

>NO10G00110.1-protein ID=NO10G00110.1-protein|Name=NO10G00110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=165bp
MHLNLGVSLIFIVIATAAAFLSSATSSSNSMSETCSRDAHKHCVPCEGGL
PAVPLERVQAVLPSLPLWKASDDHKRLSRAFIAKNFAAALAFLNAVGAVA
EAEGHHPDLHLTSYREVEIVLYTHAVGGLTENDLIMAGLIDAVPAVYSPK
WLKEHPEAESTAAK*
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Synonyms
Publications