NO10G00110.1, NO10G00110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G00110.1
Unique NameNO10G00110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length495
Alignment locationchr10:32085..32579 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:32085..32579 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G00110.1 vs.
Match: XP_005854194.1 (transcriptional coactivator pterin dehydratase [Nannochloropsis gaditana CCMP526]; XP_005855923.1 transcriptional coactivator pterin dehydratase [Nannochloropsis gaditana CCMP526]; EKU20438.1 transcriptional coactivator pterin dehydratase [Nannochloropsis gaditana CCMP526]; EKU22166.1 transcriptional coactivator pterin dehydratase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 234.6 bits (597), Expect = 2.200e-58
Identity = 119/167 (71.26%), Postives = 137/167 (82.04%), Query Frame = 0 
Query:   12 IVIATAAAFLSS------ATSSSNSMSET--------CSRDAHKHCVPCEGGLPAVPLERVQAVLPSLPLWKASDDHKRLSRAFIAKNFAAALAFLNAVGAVAEAEGHHPDLHLTSYREVEIVLYTHAVGGLTENDLIMAGLIDAVPAVYSPKWLKEHPEAESTAAK 165
            +++A +AAF  S      +TS  NSMSE+        C+RDA KHC+PCEGGLPA+ +ERVQAVLPSLPLW+ S DHKRLSR+F AKNFAAALAF++AVGAVAE EGHHPDLHLTSYREVE+VLYTHAVGGLTENDLIMA LID +PA YSPKWLKEHPEA  +AA+
Sbjct:   12 VLVAVSAAFQVSFSPAALSTSYCNSMSESAPEVSPPSCTRDAKKHCLPCEGGLPALSIERVQAVLPSLPLWRLSKDHKRLSRSFTAKNFAAALAFIDAVGAVAECEGHHPDLHLTSYREVEVVLYTHAVGGLTENDLIMAALIDTIPASYSPKWLKEHPEAGKSAAR 178
The following BLAST results are available for this feature:
BLAST of NO10G00110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854194.12.200e-5871.26transcriptional coactivator pterin dehydratase [Na... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G00110NO10G00110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G00110.1NO10G00110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G00110.1.cds1NO10G00110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G00110.1 ID=NO10G00110.1|Name=NO10G00110.1|organism=Nannochloropsis oceanica|type=mRNA|length=495bp
ATGCACCTAAACCTCGGCGTTTCCCTTATTTTTATCGTAATTGCCACCGC
TGCTGCGTTTTTGTCGTCTGCCACCAGTAGCTCCAATAGCATGAGCGAGA
CCTGTTCCCGGGACGCTCACAAGCATTGCGTCCCATGCGAAGGCGGCCTC
CCCGCCGTACCGCTTGAGCGCGTGCAGGCTGTCCTTCCCTCTCTGCCCTT
GTGGAAGGCAAGCGACGACCACAAGCGCCTGTCCCGTGCGTTCATCGCCA
AGAACTTCGCTGCCGCACTTGCTTTCCTTAACGCTGTGGGGGCCGTGGCC
GAAGCGGAAGGCCACCACCCGGACTTACACTTGACGAGCTATAGGGAGGT
GGAAATTGTGTTGTACACGCATGCCGTGGGAGGACTGACGGAGAATGATT
TGATTATGGCGGGGTTGATCGACGCAGTTCCTGCAGTGTATAGCCCCAAA
TGGTTGAAGGAGCATCCGGAGGCAGAAAGCACGGCGGCTAAGTAA
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protein sequence of NO10G00110.1

>NO10G00110.1-protein ID=NO10G00110.1-protein|Name=NO10G00110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=165bp
MHLNLGVSLIFIVIATAAAFLSSATSSSNSMSETCSRDAHKHCVPCEGGL
PAVPLERVQAVLPSLPLWKASDDHKRLSRAFIAKNFAAALAFLNAVGAVA
EAEGHHPDLHLTSYREVEIVLYTHAVGGLTENDLIMAGLIDAVPAVYSPK
WLKEHPEAESTAAK*
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mRNA from alignment at chr10:32085..32579-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G00110.1 ID=NO10G00110.1|Name=NO10G00110.1|organism=Nannochloropsis oceanica|type=mRNA|length=495bp|location=Sequence derived from alignment at chr10:32085..32579- (Nannochloropsis oceanica)
ATGCACCTAAACCTCGGCGTTTCCCTTATTTTTATCGTAATTGCCACCGC
TGCTGCGTTTTTGTCGTCTGCCACCAGTAGCTCCAATAGCATGAGCGAGA
CCTGTTCCCGGGACGCTCACAAGCATTGCGTCCCATGCGAAGGCGGCCTC
CCCGCCGTACCGCTTGAGCGCGTGCAGGCTGTCCTTCCCTCTCTGCCCTT
GTGGAAGGCAAGCGACGACCACAAGCGCCTGTCCCGTGCGTTCATCGCCA
AGAACTTCGCTGCCGCACTTGCTTTCCTTAACGCTGTGGGGGCCGTGGCC
GAAGCGGAAGGCCACCACCCGGACTTACACTTGACGAGCTATAGGGAGGT
GGAAATTGTGTTGTACACGCATGCCGTGGGAGGACTGACGGAGAATGATT
TGATTATGGCGGGGTTGATCGACGCAGTTCCTGCAGTGTATAGCCCCAAA
TGGTTGAAGGAGCATCCGGAGGCAGAAAGCACGGCGGCTAAGTAA
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Coding sequence (CDS) from alignment at chr10:32085..32579-

>NO10G00110.1 ID=NO10G00110.1|Name=NO10G00110.1|organism=Nannochloropsis oceanica|type=CDS|length=495bp|location=Sequence derived from alignment at chr10:32085..32579- (Nannochloropsis oceanica)
ATGCACCTAAACCTCGGCGTTTCCCTTATTTTTATCGTAATTGCCACCGC
TGCTGCGTTTTTGTCGTCTGCCACCAGTAGCTCCAATAGCATGAGCGAGA
CCTGTTCCCGGGACGCTCACAAGCATTGCGTCCCATGCGAAGGCGGCCTC
CCCGCCGTACCGCTTGAGCGCGTGCAGGCTGTCCTTCCCTCTCTGCCCTT
GTGGAAGGCAAGCGACGACCACAAGCGCCTGTCCCGTGCGTTCATCGCCA
AGAACTTCGCTGCCGCACTTGCTTTCCTTAACGCTGTGGGGGCCGTGGCC
GAAGCGGAAGGCCACCACCCGGACTTACACTTGACGAGCTATAGGGAGGT
GGAAATTGTGTTGTACACGCATGCCGTGGGAGGACTGACGGAGAATGATT
TGATTATGGCGGGGTTGATCGACGCAGTTCCTGCAGTGTATAGCCCCAAA
TGGTTGAAGGAGCATCCGGAGGCAGAAAGCACGGCGGCTAAGTAA
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Synonyms
Publications