NO10G00110, NO10G00110 (gene) Nannochloropsis oceanica

Overview
NameNO10G00110
Unique NameNO10G00110
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length495
Alignment locationchr10:32085..32579 -

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Properties
Property NameValue
DescriptionTranscriptional coactivator pterin dehydratase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:32085..32579 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:00081244-alpha-hydroxytetrahydrobiopterin dehydratase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0006729tetrahydrobiopterin biosynthetic process
GO:0009987cellular process
GO:0009058biosynthetic process
Vocabulary: INTERPRO
TermDefinition
IPR036428PCD_sf
IPR001533Trans/pterin_deHydtase
Homology
BLAST of NO10G00110 vs. NCBI_GenBank
Match: XP_005854194.1 (transcriptional coactivator pterin dehydratase [Nannochloropsis gaditana CCMP526] >XP_005855923.1 transcriptional coactivator pterin dehydratase [Nannochloropsis gaditana CCMP526] >EKU20438.1 transcriptional coactivator pterin dehydratase [Nannochloropsis gaditana CCMP526] >EKU22166.1 transcriptional coactivator pterin dehydratase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 235.3 bits (599), Expect = 1.300e-58
Identity = 118/167 (70.66%), Postives = 136/167 (81.44%), Query Frame = 0
Query:   12 IVIATAAAFLSS------ATXXXNSMSE--------TCSRDAHKHCVPCEGGLPAVPLERVQAVLPSLPLWKASDDHKRLSRAFIAKNFAAALAFLNAVGAVAEAEGHHPDLHLTSYREVEIVLYTHAVGGLTENDLIMAGLIDAVPAVYSPKWLKEHPEAESTAAK 165
            +++A +AAF  S      +T   NSMSE        +C+RDA KHC+PCEGGLPA+ +ERVQAVLPSLPLW+ S DHKRLSR+F AKNFAAALAF++AVGAVAE EGHHPDLHLTSYREVE+VLYTHAVGGLTENDLIMA LID +PA YSPKWLKEHPEA  +AA+
Sbjct:   12 VLVAVSAAFQVSFSPAALSTSYCNSMSESAPEVSPPSCTRDAKKHCLPCEGGLPALSIERVQAVLPSLPLWRLSKDHKRLSRSFTAKNFAAALAFIDAVGAVAECEGHHPDLHLTSYREVEVVLYTHAVGGLTENDLIMAALIDTIPASYSPKWLKEHPEAGKSAAR 178          
BLAST of NO10G00110 vs. NCBI_GenBank
Match: EWM25234.1 (transcriptional coactivator pterin dehydratase [Nannochloropsis gaditana])

HSP 1 Score: 234.6 bits (597), Expect = 2.200e-58
Identity = 119/167 (71.26%), Postives = 135/167 (80.84%), Query Frame = 0
Query:   12 IVIATAAAFLSS------ATXXXNSMSE--------TCSRDAHKHCVPCEGGLPAVPLERVQAVLPSLPLWKASDDHKRLSRAFIAKNFAAALAFLNAVGAVAEAEGHHPDLHLTSYREVEIVLYTHAVGGLTENDLIMAGLIDAVPAVYSPKWLKEHPEAESTAAK 165
            +++A +AAF  S      +T    SMSE        +C+RDA KHCVPCEGGLPA+ +ERVQAVLPSLPLW+ S DHKRLSR+F AKNFAAALAF++AVGAVAE EGHHPDLHLTSYREVE+VLYTHAVGGLTENDLIMA LID VPA YSPKWLKEHPEA  +AA+
Sbjct:   32 VLVAVSAAFQVSFSPAALSTSYCQSMSESAPEVSPPSCTRDAKKHCVPCEGGLPALSIERVQAVLPSLPLWRLSKDHKRLSRSFTAKNFAAALAFIDAVGAVAECEGHHPDLHLTSYREVEVVLYTHAVGGLTENDLIMAALIDTVPASYSPKWLKEHPEAGKSAAR 198          
BLAST of NO10G00110 vs. NCBI_GenBank
Match: OLP79970.1 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Symbiodinium microadriaticum])

HSP 1 Score: 130.2 bits (326), Expect = 6.000e-27
Identity = 60/113 (53.10%), Postives = 77/113 (68.14%), Query Frame = 0
Query:   46 CEGGLPAVPLERVQAVLPSLPLWKASDDHKRLSRAFIAKNFAAALAFLNAVGAVAEAEGHHPDLHLTSYREVEIVLYTHAVGGLTENDLIMAGLIDAVPAVYSPKWLKEHPEA 159
            C    P +  E V A +P LPLW  S D   +SR F+AKN+AAA++FLN V  +AE EGHHPD+H+TSYR V + L THA+GGL+  D ++A  +D +   YSPKWLKEHP A
Sbjct:  295 CGKDTPGLSREEVLARIPLLPLWVLSPDGASISRCFVAKNWAAAMSFLNEVSVLAEQEGHHPDVHITSYRNVRVELSTHAIGGLSLPDFVLAAKMDQIKVEYSPKWLKEHPVA 407          
BLAST of NO10G00110 vs. NCBI_GenBank
Match: CBJ27919.1 (heme peroxidase-related protein [Ectocarpus siliculosus])

HSP 1 Score: 129.4 bits (324), Expect = 1.000e-26
Identity = 61/119 (51.26%), Postives = 80/119 (67.23%), Query Frame = 0
Query:   41 KHCVPCEG----GLPAVPLERVQAVLPSLPLWKASDDHKRLSRAFIAKNFAAALAFLNAVGAVAEAEGHHPDLHLTSYREVEIVLYTHAVGGLTENDLIMAGLIDAVPAVYSPKWLKEH 156
            K C PCEG    GL       ++  L SLPLW ++ +   + R+F+AKNF +A+AFLN V  VAE +GHHPDLHLT YR VEI L TH++GG+T+ND+  A L D +P  YSPKW +E+
Sbjct:  158 KVCAPCEGGSESGLNVYTTRELEKELASLPLWTSTPNGDFIIRSFVAKNFVSAMAFLNEVATVAEEQGHHPDLHLTQYRNVEIRLQTHSMGGVTQNDIAEARLFDQLPVTYSPKWQREN 276          
BLAST of NO10G00110 vs. NCBI_GenBank
Match: PNH09126.1 (putative pterin-4-alpha-carbinolamine dehydratase [Tetrabaena socialis])

HSP 1 Score: 124.4 bits (311), Expect = 3.300e-25
Identity = 60/118 (50.85%), Postives = 75/118 (63.56%), Query Frame = 0
Query:   46 CEGGLPAVPLERVQAVLPSLPLWKASDDHKRLSRAFIAKNFAAALAFLNAVGAVAEAEGHHPDLHLTSYREVEIVLYTHAVGGLTENDLIMAGLIDAVPAVYSPKWLKEHPEAESTAA 164
            C    P V    +Q  + +LP W+ S D   LSR F AKNF AA+ F N V  VAEAEGHHPDLHL ++REVE+ L THAVGG+T  DL++A  +DA+   YSPKW K+  E  +  A
Sbjct:   63 CTRDTPKVAPAELQGYMRALPAWQVSSDQAMLSRTFTAKNFMAAIRFFNKVAEVAEAEGHHPDLHLRNFREVEVNLSTHAVGGITLPDLVLAAKLDALEVEYSPKWAKQQEERMAAEA 180          
BLAST of NO10G00110 vs. NCBI_GenBank
Match: XP_001692301.1 (heme peroxidase-related protein [Chlamydomonas reinhardtii])

HSP 1 Score: 123.2 bits (308), Expect = 7.300e-25
Identity = 58/117 (49.57%), Postives = 77/117 (65.81%), Query Frame = 0
Query:   46 CEGGLPAVPLERVQAVLPSLPLWKASDDHKRLSRAFIAKNFAAALAFLNAVGAVAEAEGHHPDLHLTSYREVEIVLYTHAVGGLTENDLIMAGLIDAVPAVYSPKWLKEHPEAESTA 163
            C    P V    + + + SLP W+ + D   +SR+F+AKNF AA+AF N V  VAEA+GHHPDLHL ++REVE+V+ THAVGG+T  DL +A +ID +   YSPKW K   E  + A
Sbjct:   68 CNKDTPKVEPADLASYMRSLPAWRLNADSTAISRSFVAKNFMAAIAFFNKVAEVAEAQGHHPDLHLRNFREVEVVVSTHAVGGITLPDLALAAMIDGIEVDYSPKWAKAEVERMAAA 184          
BLAST of NO10G00110 vs. NCBI_GenBank
Match: WP_015246352.1 (4a-hydroxytetrahydrobiopterin dehydratase [Singulisphaera acidiphila] >AGA27203.1 pterin-4a-carbinolamine dehydratase [Singulisphaera acidiphila DSM 18658])

HSP 1 Score: 123.2 bits (308), Expect = 7.300e-25
Identity = 55/104 (52.88%), Postives = 73/104 (70.19%), Query Frame = 0
Query:   41 KHCVPCEGGLPAVPLERVQAVLPSLPLWKASDDHKRLSRAFIAKNFAAALAFLNAVGAVAEAEGHHPDLHLTSYREVEIVLYTHAVGGLTENDLIMAGLIDAVP 145
            K C PCEGG+P VP +  +A+L  +  WK +DD  R+ R++ AKNF AA+ F N V  +AE +GHHPDLHL  YR V I L+THA+GGL+END I+A  I+ +P
Sbjct:   12 KKCSPCEGGIPPVPADEARALLTHIEGWKLADDGTRIKRSWTAKNFMAAIDFFNKVAELAEQDGHHPDLHLEGYRNVSIELWTHAIGGLSENDFILAAKINQLP 115          
BLAST of NO10G00110 vs. NCBI_GenBank
Match: PNW84164.1 (hypothetical protein CHLRE_04g223800v5 [Chlamydomonas reinhardtii] >PNW84165.1 hypothetical protein CHLRE_04g223800v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 123.2 bits (308), Expect = 7.300e-25
Identity = 58/117 (49.57%), Postives = 77/117 (65.81%), Query Frame = 0
Query:   46 CEGGLPAVPLERVQAVLPSLPLWKASDDHKRLSRAFIAKNFAAALAFLNAVGAVAEAEGHHPDLHLTSYREVEIVLYTHAVGGLTENDLIMAGLIDAVPAVYSPKWLKEHPEAESTA 163
            C    P V    + + + SLP W+ + D   +SR+F+AKNF AA+AF N V  VAEA+GHHPDLHL ++REVE+V+ THAVGG+T  DL +A +ID +   YSPKW K   E  + A
Sbjct:   27 CNKDTPKVEPADLASYMRSLPAWRLNADSTAISRSFVAKNFMAAIAFFNKVAEVAEAQGHHPDLHLRNFREVEVVVSTHAVGGITLPDLALAAMIDGIEVDYSPKWAKAEVERMAAA 143          
BLAST of NO10G00110 vs. NCBI_GenBank
Match: WP_068419222.1 (4a-hydroxytetrahydrobiopterin dehydratase [Planctomyces sp. SH-PL62] >AMV39701.1 Putative pterin-4-alpha-carbinolamine dehydratase [Planctomyces sp. SH-PL62])

HSP 1 Score: 121.3 bits (303), Expect = 2.800e-24
Identity = 55/104 (52.88%), Postives = 74/104 (71.15%), Query Frame = 0
Query:   41 KHCVPCEGGLPAVPLERVQAVLPSLPLWKASDDHKRLSRAFIAKNFAAALAFLNAVGAVAEAEGHHPDLHLTSYREVEIVLYTHAVGGLTENDLIMAGLIDAVP 145
            K CVPCEGG+P +  + V A++ ++P W   +D KR+ R + A+NF A L FL+ VG +AE EGHHPDLHL  YR V I + THA+GGL+END I+A  I+A+P
Sbjct:   12 KKCVPCEGGVPPLEPDVVDALIRTVPGWTLDEDGKRIHRGWTARNFVAGLHFLDKVGELAEEEGHHPDLHLEGYRNVAIEITTHAIGGLSENDFILAAKINAIP 115          
BLAST of NO10G00110 vs. NCBI_GenBank
Match: OJW26967.1 (pterin-4-alpha-carbinolamine dehydratase [Planctomycetales bacterium 71-10])

HSP 1 Score: 121.3 bits (303), Expect = 2.800e-24
Identity = 56/104 (53.85%), Postives = 72/104 (69.23%), Query Frame = 0
Query:   41 KHCVPCEGGLPAVPLERVQAVLPSLPLWKASDDHKRLSRAFIAKNFAAALAFLNAVGAVAEAEGHHPDLHLTSYREVEIVLYTHAVGGLTENDLIMAGLIDAVP 145
            + CVPCEGG+P +  E V+ +L ++  W  S D KR+ R + AKNF A L F + VG +AEAEGHHPDL LT YR V + + THA+GGL+END I+A  ID VP
Sbjct:   12 RKCVPCEGGVPPLAREEVEELLKAVAGWSLSSDGKRIRREWTAKNFVAGLRFFDKVGELAEAEGHHPDLSLTGYRNVAVEITTHAIGGLSENDFILAAKIDEVP 115          
The following BLAST results are available for this feature:
BLAST of NO10G00110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854194.11.300e-5870.66transcriptional coactivator pterin dehydratase [Na... [more]
EWM25234.12.200e-5871.26transcriptional coactivator pterin dehydratase [Na... [more]
OLP79970.16.000e-2753.104-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
CBJ27919.11.000e-2651.26heme peroxidase-related protein [Ectocarpus silicu... [more]
PNH09126.13.300e-2550.85putative pterin-4-alpha-carbinolamine dehydratase ... [more]
XP_001692301.17.300e-2549.57heme peroxidase-related protein [Chlamydomonas rei... [more]
WP_015246352.17.300e-2552.884a-hydroxytetrahydrobiopterin dehydratase [Singuli... [more]
PNW84164.17.300e-2549.57hypothetical protein CHLRE_04g223800v5 [Chlamydomo... [more]
WP_068419222.12.800e-2452.884a-hydroxytetrahydrobiopterin dehydratase [Plancto... [more]
OJW26967.12.800e-2453.85pterin-4-alpha-carbinolamine dehydratase [Planctom... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL055nonsL055Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR091ncniR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007668NSK007668Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G00110.1NO10G00110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612955gene_10813Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100089g9gene5271Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G00110.1NO10G00110.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G00110 ID=NO10G00110|Name=NO10G00110|organism=Nannochloropsis oceanica|type=gene|length=495bp
ATGCACCTAAACCTCGGCGTTTCCCTTATTTTTATCGTAATTGCCACCGC
TGCTGCGTTTTTGTCGTCTGCCACCAGTAGCTCCAATAGCATGAGCGAGA
CCTGTTCCCGGGACGCTCACAAGCATTGCGTCCCATGCGAAGGCGGCCTC
CCCGCCGTACCGCTTGAGCGCGTGCAGGCTGTCCTTCCCTCTCTGCCCTT
GTGGAAGGCAAGCGACGACCACAAGCGCCTGTCCCGTGCGTTCATCGCCA
AGAACTTCGCTGCCGCACTTGCTTTCCTTAACGCTGTGGGGGCCGTGGCC
GAAGCGGAAGGCCACCACCCGGACTTACACTTGACGAGCTATAGGGAGGT
GGAAATTGTGTTGTACACGCATGCCGTGGGAGGACTGACGGAGAATGATT
TGATTATGGCGGGGTTGATCGACGCAGTTCCTGCAGTGTATAGCCCCAAA
TGGTTGAAGGAGCATCCGGAGGCAGAAAGCACGGCGGCTAAGTAA
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protein sequence of NO10G00110.1

>NO10G00110.1-protein ID=NO10G00110.1-protein|Name=NO10G00110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=165bp
MHLNLGVSLIFIVIATAAAFLSSATSSSNSMSETCSRDAHKHCVPCEGGL
PAVPLERVQAVLPSLPLWKASDDHKRLSRAFIAKNFAAALAFLNAVGAVA
EAEGHHPDLHLTSYREVEIVLYTHAVGGLTENDLIMAGLIDAVPAVYSPK
WLKEHPEAESTAAK*
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Synonyms
Publications