NO09G03710, NO09G03710 (gene) Nannochloropsis oceanica

Overview
NameNO09G03710
Unique NameNO09G03710
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length5844
Alignment locationchr9:1065721..1071564 +

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Properties
Property NameValue
DescriptionTim10 ddp zinc finger domain-containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1065721..1071564 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR035427Tim10-like_dom_sf
IPR004217Tim10/DDP_fam_Znf
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005739mitochondrion
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Homology
[Close]
BLAST of NO09G03710 vs. NCBI_GenBank
Match: XP_009841720.1 (hypothetical protein H257_15336 [Aphanomyces astaci] >ETV68766.1 hypothetical protein H257_15336 [Aphanomyces astaci])

HSP 1 Score: 71.2 bits (173), Expect = 1.700e-9
Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 0 
Query:   19 MYNRLVERCFKECVTRFRSKKMDDGELSCVSRCAEKYLKLTSRAGFRFAEFQSQQSGAEG 79
            +YNR+V  CF ECV  FRSKK++D E++C++ CAEK+LK T R G RFAE  +QQ+  +G
Sbjct:   30 LYNRVVATCFNECVQSFRSKKLEDKEVNCMNLCAEKFLKHTQRVGVRFAE--AQQAAMDG 87
[Close]
BLAST of NO09G03710 vs. NCBI_GenBank
Match: XP_009841721.1 (hypothetical protein, variant [Aphanomyces astaci] >ETV68767.1 hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 71.2 bits (173), Expect = 1.700e-9
Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 0 
Query:   19 MYNRLVERCFKECVTRFRSKKMDDGELSCVSRCAEKYLKLTSRAGFRFAEFQSQQSGAEG 79
            +YNR+V  CF ECV  FRSKK++D E++C++ CAEK+LK T R G RFAE  +QQ+  +G
Sbjct:   30 LYNRVVATCFNECVQSFRSKKLEDKEVNCMNLCAEKFLKHTQRVGVRFAE--AQQAAMDG 87
[Close]
BLAST of NO09G03710 vs. NCBI_GenBank
Match: XP_008879473.1 (hypothetical protein H310_13665 [Aphanomyces invadans] >ETV91836.1 hypothetical protein H310_13665 [Aphanomyces invadans])

HSP 1 Score: 69.7 bits (169), Expect = 5.000e-9
Identity = 33/60 (55.00%), Postives = 44/60 (73.33%), Query Frame = 0 
Query:   19 MYNRLVERCFKECVTRFRSKKMDDGELSCVSRCAEKYLKLTSRAGFRFAEFQSQQSGAEG 79
            +YNR+V  CF ECV  FRSKK++D E +C++ CAEK+LK T R G RFAE  +QQ+  +G
Sbjct:   30 LYNRVVATCFNECVQSFRSKKLEDKEENCMNLCAEKFLKHTQRVGVRFAE--AQQAAMDG 87
[Close]
BLAST of NO09G03710 vs. NCBI_GenBank
Match: XP_010266687.1 (PREDICTED: mitochondrial import inner membrane translocase subunit Tim9 isoform X1 [Nelumbo nucifera])

HSP 1 Score: 69.7 bits (169), Expect = 5.000e-9
Identity = 35/65 (53.85%), Postives = 44/65 (67.69%), Query Frame = 0 
Query:    4 ILSPHKHTLTRTHDSMYNRLVERCFKECVTRFRSKKMDDGELSCVSRCAEKYLKLTSRAGFRFAE 69
            IL  H+ T++ +   MYN LVERCF +CV  FR K +D  E +CV RCAEK+LK + R G RFAE
Sbjct:   52 ILQHHQSTVSSSL-RMYNSLVERCFTDCVENFRRKSLDKQEETCVRRCAEKFLKHSMRVGMRFAE 115
[Close]
BLAST of NO09G03710 vs. NCBI_GenBank
Match: KXZ42650.1 (hypothetical protein GPECTOR_127g528 [Gonium pectorale])

HSP 1 Score: 69.7 bits (169), Expect = 5.000e-9
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 0 
Query:   19 MYNRLVERCFKECVTRFRSKKMDDGELSCVSRCAEKYLKLTSRAGFRFAEFQSQ 73
            MYNRLVERCFKECV   RSK +   E  CV++C EK++ +T+R G RF EF +Q
Sbjct:    1 MYNRLVERCFKECVEDMRSKALTGKEEQCVAKCCEKFMHVTARVGMRFQEFFTQ 54
[Close]
BLAST of NO09G03710 vs. NCBI_GenBank
Match: PHT37644.1 (Mitochondrial import inner membrane translocase subunit Tim9 [Capsicum baccatum])

HSP 1 Score: 69.7 bits (169), Expect = 5.000e-9
Identity = 30/50 (60.00%), Postives = 38/50 (76.00%), Query Frame = 0 
Query:   19 MYNRLVERCFKECVTRFRSKKMDDGELSCVSRCAEKYLKLTSRAGFRFAE 69
            MYN LVERCF +CV  F+ K +D  E +CV+RCAEK++KL+ R G RFAE
Sbjct:   35 MYNNLVERCFTDCVDNFKRKTLDKQEETCVTRCAEKFMKLSMRVGLRFAE 84
[Close]
BLAST of NO09G03710 vs. NCBI_GenBank
Match: CAJ73651.1 (translocator of the inner mitochondrial membrane 9 [Guillardia theta])

HSP 1 Score: 69.3 bits (168), Expect = 6.500e-9
Identity = 34/68 (50.00%), Postives = 43/68 (63.24%), Query Frame = 0 
Query:   18 SMYNRLVERCFKECVTRFRSKKMDDGELSCVSRCAEKYLKLTSRAGFRFAEFQSQ----QSGAEGGGM 82
            +MYN LVERCF  CVT FRSK +DD E  C++RC  K++K ++RAG  F     Q      GA GGG+
Sbjct:   32 TMYNSLVERCFNNCVTSFRSKTLDDREEKCITRCTTKFIKASARAGQAFQAIGMQPGQGMPGAPGGGV 99
[Close]
BLAST of NO09G03710 vs. NCBI_GenBank
Match: XP_001689615.1 (mitochondrial inner membrane translocase [Chlamydomonas reinhardtii] >PNW88531.1 hypothetical protein CHLRE_01g033400v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 69.3 bits (168), Expect = 6.500e-9
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 0 
Query:   19 MYNRLVERCFKECVTRFRSKKMDDGELSCVSRCAEKYLKLTSRAGFRFAEFQSQ 73
            MYN+LVERCF+ECV   RSK +   E  CVS+C EK++ +T+R G RF EF SQ
Sbjct:   34 MYNKLVERCFQECVEDMRSKALTGKEEQCVSKCCEKFMHVTARVGMRFQEFFSQ 87
[Close]
BLAST of NO09G03710 vs. NCBI_GenBank
Match: XP_009420097.1 (PREDICTED: mitochondrial import inner membrane translocase subunit Tim9-like [Musa acuminata subsp. malaccensis])

HSP 1 Score: 69.3 bits (168), Expect = 6.500e-9
Identity = 32/50 (64.00%), Postives = 36/50 (72.00%), Query Frame = 0 
Query:   19 MYNRLVERCFKECVTRFRSKKMDDGELSCVSRCAEKYLKLTSRAGFRFAE 69
            MYN LVERCF ECV  FR K +D  E +CV RCAEK+LK + R G RFAE
Sbjct:   35 MYNTLVERCFSECVDTFRRKSLDKQEETCVRRCAEKFLKHSMRVGMRFAE 84
[Close]
BLAST of NO09G03710 vs. NCBI_GenBank
Match: OMO91250.1 (Tim10/DDP family zinc finger [Corchorus olitorius])

HSP 1 Score: 69.3 bits (168), Expect = 6.500e-9
Identity = 34/63 (53.97%), Postives = 39/63 (61.90%), Query Frame = 0 
Query:   10 HTLTRTHDSMYNRLVERCFKECVTRFRSKKMDDGELSCVSRCAEKYLKLTSRAGFRFAEFQSQ 73
            H   R    MYN LVERCF +CV  F  K +   E +CV+RCAEKYLK + R G RFAE  SQ
Sbjct:   26 HLQLRDSLRMYNSLVERCFTDCVDNFTRKTLQKQEETCVARCAEKYLKHSMRVGLRFAELNSQ 88
The following BLAST results are available for this feature:
BLAST of NO09G03710 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_009841720.11.700e-955.00hypothetical protein H257_15336 [Aphanomyces astac... [more]
XP_009841721.11.700e-955.00hypothetical protein, variant [Aphanomyces astaci]... [more]
XP_008879473.15.000e-955.00hypothetical protein H310_13665 [Aphanomyces invad... [more]
XP_010266687.15.000e-953.85PREDICTED: mitochondrial import inner membrane tra... [more]
KXZ42650.15.000e-957.41hypothetical protein GPECTOR_127g528 [Gonium pecto... [more]
PHT37644.15.000e-960.00Mitochondrial import inner membrane translocase su... [more]
CAJ73651.16.500e-950.00translocator of the inner mitochondrial membrane 9... [more]
XP_001689615.16.500e-957.41mitochondrial inner membrane translocase [Chlamydo... [more]
XP_009420097.16.500e-964.00PREDICTED: mitochondrial import inner membrane tra... [more]
OMO91250.16.500e-953.97Tim10/DDP family zinc finger [Corchorus olitorius][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR076ncniR076Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR056ncniR056Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G03710.1NO09G03710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611190gene_10360Nannochloropsis oceanica (N. oceanica CCMP1779)gene
jgi.p|Nanoce1779_2|607449gene_9711Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100951g2gene3131Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G03710.1NO09G03710.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G03710 ID=NO09G03710|Name=NO09G03710|organism=Nannochloropsis oceanica|type=gene|length=5844bp
AAAGGAAAGAGGAAGgtgaggagggagcaagaaggctaaggcccatcaat
cccaccatgggttgcacactgccacgggattacgttttatttcgtgcatg
gatgaagacatactcccggatgttcgcacctgtcccccttgccgtgctga
atgcaccgccacatgattcctgttagacggccactgtaagcagcaactcg
gttgcaagccctcgacaagccacacggggactgacacgggaggtggaggg
agctctcggacacagtcgatcgacaaatacgaaatggtcaaggtgacggt
agctctcatcggcacgattgcggcggtttcgatctctttcgcatacggcg
tgcgtcatatcgagggggagtggaagtcggaagtcgcgcgcgtgcagaac
aaggcggctacggagatcaggcggatcgagggggagtggaagtctaaaga
gtgccagtggaagtcgaaagagggccggcggaaggcggaagtcgcgcgca
tcgagggccagtggaaggcggaagtaaagcggatcgagggggagtggaaa
atgtcggagcgattgtggaaggcggaggtggagcgatataagcgcgacct
ccaattggcccatactcgtgactatgagccatatcaggcggcgatatcgc
agaaaggggaaagaacaacgggggcaggaagcggaggactggagaaggaa
gagaagaagaactagcttttggtatcctgcgtagattaacaagaaagtgt
acagtgggcagagtaaacataggcaaaagacataggtaaagacatgtaca
gtggccggggcgaataaggatagatggttgtgagggggttggtactccta
caccaccaatgcaataaggagggctccccaaaatgttcaagcagcgagtt
cttcttcctcttatcattattctttactatcatcatgatcatcatcatcc
ttcttctaggtcgttttgttcttcttcttctttttcttctttttcttctt
cttgttcttgttcttgctcttgttcttcttcttcttgttcttcttgttct
tcttcttgttcttcttcttcctcttcttcctcttcttcttcttcttcttt
actgcgtcctgttcatataatcctccttctgctgttgctgcccctcctcc
tcccccccctcctcttttccttttcccccctcctcctccccccctttcct
gtctttccgttccttcctccacgaccattcactttcccatccccctcctc
ctcctcctcctcctcctcctcgtcgtcgtcgctccggacgtctttttcca
ccttgcctttaactatcatattgaccgccatccgcgcgattaagtagaac
ctgaaagagggagggagggagggagggacgatgggggaggaggagatgtg
taaatcaagaaaatgaaggaaatgtataaatgagtcgtttcttgttgctg
ctgagggccttccaatggtccacaaggaagggagggagggagggaggaag
ggcgggaaggagggagggcaggaggacgtgtgtaccagaatacgtgcaga
aattgaaggacgaagagcatcccatagaatatatacatgcccaagtattt
ccccccgatgatggcgtgggcgtgcgtgaaggtggagtgcaggatccaaa
atgggtagatcacctgggaagggagggagggagggagggagggagggagg
gagggagggagggaggggggagaagggggggagggcagtgagccccctgg
cgccttgtctgtttgtttatatggattacacaggaatacgacccctccct
ccctccctccctccccccctccctcccttcctccctcccaccctccccct
ctcaccagccgggtcaggaaaaatgagaccgcaaagcacacgaagaggct
gtcggtgaccacctgcgcccaggggcgagagcgggaggtgtagttgaaaa
tcttggccgtttctaaggacaggagggagcaagggagggagggagggagg
gagggagggagggaggggcatagataatgtgaggaaggcttccaaactcc
tctttccgggtcgtctacgaccgacctcgctcccttccctccctccctcc
ctccctcccatcgtaggcctcacccaaaaagacgtcggacagatcatgga
cgatcatcaccagggtgccaatgcggatgaaactgaggcaaggagggagg
gagggagagaggagggcgggagggaaggaaggtgagatgcgaggcaaggg
acggagagaaacaggagagaatcaaaggagggagggagagagggagggag
agaggaggggagggaggggcacgaacgaaccaggacagccaagagaaggc
tatgaggaaaagggtggcggcgtggtggagaaacatctcccaaaaatcgc
tccgtttggtgtcggtgaattggaagagagacaggtggagataattgccg
agctggtaggcgtagtagaagaccacaggggaaggtacggcttggagggg
atagccgtacctggagacggagggagggaaaggacgtgagaggtgggagg
gagggagagagaagtgggagtgcgcatgggagggagggagggagggaggg
agggagggagggagggagggagggaggggcgtacgtaccagcactcccgt
atgtcccaaaaccacagctggggaaccacacacacccacgagagccccac
tgccgttagatacacacagctcctccaacacgcttccttgaacttggcca
ggcgcttgttctccctcccttcctgccgtcgccacctgaagtaggcatgc
acccgcgcgatgcttccaggtcggtccaacaccacctgccctccttcccg
ccctccgttttcattgaaggacaaggaaggcgactttgggggggaagaga
cagcgtaggaagggaaggaggacgagggggtggtcaaggtcaggcacagg
cgtctcctcctcatgccctcctcctctcctcctcctccaatacgggggag
ggtgggaggggttgaggggagggaagcctctggaaagacgtggtctttcc
cttcctctttcactcctttcgttctccctccctcctcgtggtcgagggcg
aggcagagggccgtcatctcgggggatgagggggagggagggaaggggga
gagggcgaaagccgcctccagtgcttcgacagcccttggcgctcggctcc
tatcgttaaggtggtagttgctactgctgctcctcctagaggaggctgag
gagaagggggaggaggacggagaggagtagggagacgaggtggaggtgga
gatggaggaggaggaggaggaggaggaggaggaagcggcgtccgtggcag
caggagcaacagcagcaaggtgcttgagcttcatggcatatattccaaga
ggctgtgttaaggcaatgcatgtatggaagagccgatgagtgcttgaaac
caacatttttcttttacagttttcacgcatgcaacaggggaaaagtcgtc
ctccctccctccctccgtccctcccttcatgtaccccaaagacgagtcga
tccagcaccgcgcggagaatacaaagaccgagagccacccacacgccata
caacaggtggtgggaggatggaaagagcctgatggtccaacgtgaggggc
gagggagtgagggagggagggaggaagaaaaggaaggggggagggaggtt
cggggttcagcgatggaagaagcaataaaccgatgaaaatcaccataccc
accatatttgatcatctatcgacaactattccacgttcaagccctcggca
tgctttcaacgcccccctttttttccaggaagcagcccacctttcccttc
ctcgcttccttccttcctcccctctcttacctttccccccgctgcgccgc
catgagcactttcccgctcttaacagcatcgggaaaaagccataagtagt
tggtaacaggcaccatcaattgttctctccataaggcccaatctttgctt
tgtgcgatgccactaacgcttggaactgccgcggagatcgtctcccagag
gatcgcaaccggggacgtaggaaaggacatactttgccggtcaaggcggg
agagaagagtgaagggtattattattacgctggttgaaaaattggaggag
gtaagtcgggacgtttagacagggttgtaggagggagtgcaagaaggaag
gatgctgagggcaggagacagaggaggtaagcgtagtggcgcttttgttt
cgctgcgtgcagcgtcttggtgcttccccagcagcgacccttgatgaact
ttacaaatacacgcttgttcacgtgaagaggcccctgcggaagggatgag
ggggggattcagggagggtgagacaaaagagcacgaatgcgcccgccttc
cggtcgcgttcttttccacaaatgcacacgacgccgctcccgccgatgcc
gccagggtaggccacgctgctgtcttgtactgtttatttggatcgaggtg
ccatccagagtatcattgcgaagcggcggtcaagcagcgatgcaaatcta
gaacaaggatcattctcaaatccaactggggaacctaaaacaatttcaac
acacgagacagctgcaggcgctcagcgacgaatgcgggcagcgatgacca
tcatgatgccttccacccactcccacctctaccaggttcacaatctacac
gtccacaatcgtaccttaaccattcatagGCACCGTTTCCAAGCTATTCA
AGCCTGAAGCGCCAAGTCAACCTCATTGCCGACACTCTGCACCTTTTAGC
CTCCCAAGCCACCACCACCCCAACGAAGTCACCACCCAGTCAGTCAAGCA
AATAAGATGAACCCCATTCAGAACATTCCACCGCACCAGCGCCAAGAATT
TATGCGCACCTTGGAGGAGCTCCAGGTCAAGGACTCGTTGCTGTGAGTGT
GCGCTCGATAGGGAAGAGGAGGGGAAAAGGGAAGGAGAGCGGTGGTGTGG
AGGGGAGGTCGGAGAGACGGGATGACATGCATACTTTCTCCGCATAAACA
TACACTTACACGAACACACGACAGCATGTACAATCGGCTGGTAGAGCGAT
GCTTCAAGGAATGCGTCACAgtacgtttcttaattttctggatattggtt
ttggcgcgtggatattgggaaataggcattgattgcgttttatgtgggcg
agaggcggatggagtcaagcagcttcggctctctctcttacacctgcaca
catatatatgatagacagcaaactttcgtcctctcgtagatctcgttccc
ttgttttcttcttccccctgttctctcattgagcccgccctccccgcccc
acatccaccttcaccttcatcacatcacagCGTTTTCGTTCCAAGAAGAT
GGACGACGGAGAGCTCTCGTGCGTTTCTCGTTGCGCTGAGAAATATCTCA
AGTTGACTTCACGGGCAGGCTTTCGCTTTGCAGAATTTCAATCGCAACAA
TCAGGGGCTGAGGGGGGGGGCATGCCGCCACCTTCGTAGGAGGAGGGAGA
GGAGGGCACAAGAGAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA
AGAAGAAGAAAAGGGGGAGAAGTCGAGATGACAAACATTTAAAAAAGAAT
GAGACACCATTCAAAGCTGGACCAAGCAACACCAAATGACACACAATGTG
AAGGATCAACAGAAGGCATGGAGAGATGATGAAGCGTAAGTAGCCGGGAG
AGGCAGGGGCAGGAGACAGTCGGAGAAGGAGATAAGGAGAGCATCGAAGC
TAGTCGTGTCAAAAACGTAAAGAAAGAGCAGAAGTTTTTCTGAC
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protein sequence of NO09G03710.1

>NO09G03710.1-protein ID=NO09G03710.1-protein|Name=NO09G03710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=86bp
MTCILSPHKHTLTRTHDSMYNRLVERCFKECVTRFRSKKMDDGELSCVSR
CAEKYLKLTSRAGFRFAEFQSQQSGAEGGGMPPPS*
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Synonyms
Publications