NO09G03710.1, NO09G03710.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03710.1
Unique NameNO09G03710.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length870
Alignment locationchr9:1065721..1071564 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1065721..1071564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G03710.1 vs.
Match: XP_005854578.1 (tim10 ddp zinc finger domain-containing protein [Nannochloropsis gaditana CCMP526]; EKU21778.1 tim10 ddp zinc finger domain-containing protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 129.8 bits (325), Expect = 4.100e-27
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 0 
Query:   19 MYNRLVERCFKECVTRFRSKKMDDGELSCVSRCAEKYLKLTSRAGFRFAEFQSQQSGAEGGGMPPP 85
            MYNRLVERCFKECVTRFRSKKMDD ELSCVS+CAEKYLKLTSRAGFRFAEFQSQQSG+EGG MPPP
Sbjct:   30 MYNRLVERCFKECVTRFRSKKMDDTELSCVSKCAEKYLKLTSRAGFRFAEFQSQQSGSEGGVMPPP 95
The following BLAST results are available for this feature:
BLAST of NO09G03710.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854578.14.100e-2793.94tim10 ddp zinc finger domain-containing protein [N... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03710NO09G03710Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03710.1NO09G03710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03710.1.cds1NO09G03710.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03710.1.cds2NO09G03710.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03710.1 ID=NO09G03710.1|Name=NO09G03710.1|organism=Nannochloropsis oceanica|type=mRNA|length=870bp
AAAGGAAAGAGGAAGGCACCGTTTCCAAGCTATTCAAGCCTGAAGCGCCA
AGTCAACCTCATTGCCGACACTCTGCACCTTTTAGCCTCCCAAGCCACCA
CCACCCCAACGAAGTCACCACCCAGTCAGTCAAGCAAATAAGATGAACCC
CATTCAGAACATTCCACCGCACCAGCGCCAAGAATTTATGCGCACCTTGG
AGGAGCTCCAGGTCAAGGACTCGTTGCTGTGAGTGTGCGCTCGATAGGGA
AGAGGAGGGGAAAAGGGAAGGAGAGCGGTGGTGTGGAGGGGAGGTCGGAG
AGACGGGATGACATGCATACTTTCTCCGCATAAACATACACTTACACGAA
CACACGACAGCATGTACAATCGGCTGGTAGAGCGATGCTTCAAGGAATGC
GTCACACGTTTTCGTTCCAAGAAGATGGACGACGGAGAGCTCTCGTGCGT
TTCTCGTTGCGCTGAGAAATATCTCAAGTTGACTTCACGGGCAGGCTTTC
GCTTTGCAGAATTTCAATCGCAACAATCAGGGGCTGAGGGGGGGGGCATG
CCGCCACCTTCGTAGGAGGAGGGAGAGGAGGGCACAAGAGAAAAGAAGAA
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGGGGGAGAAGTC
GAGATGACAAACATTTAAAAAAGAATGAGACACCATTCAAAGCTGGACCA
AGCAACACCAAATGACACACAATGTGAAGGATCAACAGAAGGCATGGAGA
GATGATGAAGCGTAAGTAGCCGGGAGAGGCAGGGGCAGGAGACAGTCGGA
GAAGGAGATAAGGAGAGCATCGAAGCTAGTCGTGTCAAAAACGTAAAGAA
AGAGCAGAAGTTTTTCTGAC
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protein sequence of NO09G03710.1

>NO09G03710.1-protein ID=NO09G03710.1-protein|Name=NO09G03710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=86bp
MTCILSPHKHTLTRTHDSMYNRLVERCFKECVTRFRSKKMDDGELSCVSR
CAEKYLKLTSRAGFRFAEFQSQQSGAEGGGMPPPS*
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mRNA from alignment at chr9:1065721..1071564+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03710.1 ID=NO09G03710.1|Name=NO09G03710.1|organism=Nannochloropsis oceanica|type=mRNA|length=5844bp|location=Sequence derived from alignment at chr9:1065721..1071564+ (Nannochloropsis oceanica)
AAAGGAAAGAGGAAGGTGAGGAGGGAGCAAGAAGGCTAAGGCCCATCAAT
CCCACCATGGGTTGCACACTGCCACGGGATTACGTTTTATTTCGTGCATG
GATGAAGACATACTCCCGGATGTTCGCACCTGTCCCCCTTGCCGTGCTGA
ATGCACCGCCACATGATTCCTGTTAGACGGCCACTGTAAGCAGCAACTCG
GTTGCAAGCCCTCGACAAGCCACACGGGGACTGACACGGGAGGTGGAGGG
AGCTCTCGGACACAGTCGATCGACAAATACGAAATGGTCAAGGTGACGGT
AGCTCTCATCGGCACGATTGCGGCGGTTTCGATCTCTTTCGCATACGGCG
TGCGTCATATCGAGGGGGAGTGGAAGTCGGAAGTCGCGCGCGTGCAGAAC
AAGGCGGCTACGGAGATCAGGCGGATCGAGGGGGAGTGGAAGTCTAAAGA
GTGCCAGTGGAAGTCGAAAGAGGGCCGGCGGAAGGCGGAAGTCGCGCGCA
TCGAGGGCCAGTGGAAGGCGGAAGTAAAGCGGATCGAGGGGGAGTGGAAA
ATGTCGGAGCGATTGTGGAAGGCGGAGGTGGAGCGATATAAGCGCGACCT
CCAATTGGCCCATACTCGTGACTATGAGCCATATCAGGCGGCGATATCGC
AGAAAGGGGAAAGAACAACGGGGGCAGGAAGCGGAGGACTGGAGAAGGAA
GAGAAGAAGAACTAGCTTTTGGTATCCTGCGTAGATTAACAAGAAAGTGT
ACAGTGGGCAGAGTAAACATAGGCAAAAGACATAGGTAAAGACATGTACA
GTGGCCGGGGCGAATAAGGATAGATGGTTGTGAGGGGGTTGGTACTCCTA
CACCACCAATGCAATAAGGAGGGCTCCCCAAAATGTTCAAGCAGCGAGTT
CTTCTTCCTCTTATCATTATTCTTTACTATCATCATGATCATCATCATCC
TTCTTCTAGGTCGTTTTGTTCTTCTTCTTCTTTTTCTTCTTTTTCTTCTT
CTTGTTCTTGTTCTTGCTCTTGTTCTTCTTCTTCTTGTTCTTCTTGTTCT
TCTTCTTGTTCTTCTTCTTCCTCTTCTTCCTCTTCTTCTTCTTCTTCTTT
ACTGCGTCCTGTTCATATAATCCTCCTTCTGCTGTTGCTGCCCCTCCTCC
TCCCCCCCCTCCTCTTTTCCTTTTCCCCCCTCCTCCTCCCCCCCTTTCCT
GTCTTTCCGTTCCTTCCTCCACGACCATTCACTTTCCCATCCCCCTCCTC
CTCCTCCTCCTCCTCCTCCTCGTCGTCGTCGCTCCGGACGTCTTTTTCCA
CCTTGCCTTTAACTATCATATTGACCGCCATCCGCGCGATTAAGTAGAAC
CTGAAAGAGGGAGGGAGGGAGGGAGGGACGATGGGGGAGGAGGAGATGTG
TAAATCAAGAAAATGAAGGAAATGTATAAATGAGTCGTTTCTTGTTGCTG
CTGAGGGCCTTCCAATGGTCCACAAGGAAGGGAGGGAGGGAGGGAGGAAG
GGCGGGAAGGAGGGAGGGCAGGAGGACGTGTGTACCAGAATACGTGCAGA
AATTGAAGGACGAAGAGCATCCCATAGAATATATACATGCCCAAGTATTT
CCCCCCGATGATGGCGTGGGCGTGCGTGAAGGTGGAGTGCAGGATCCAAA
ATGGGTAGATCACCTGGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGGGGAGAAGGGGGGGAGGGCAGTGAGCCCCCTGG
CGCCTTGTCTGTTTGTTTATATGGATTACACAGGAATACGACCCCTCCCT
CCCTCCCTCCCTCCCCCCCTCCCTCCCTTCCTCCCTCCCACCCTCCCCCT
CTCACCAGCCGGGTCAGGAAAAATGAGACCGCAAAGCACACGAAGAGGCT
GTCGGTGACCACCTGCGCCCAGGGGCGAGAGCGGGAGGTGTAGTTGAAAA
TCTTGGCCGTTTCTAAGGACAGGAGGGAGCAAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGGCATAGATAATGTGAGGAAGGCTTCCAAACTCC
TCTTTCCGGGTCGTCTACGACCGACCTCGCTCCCTTCCCTCCCTCCCTCC
CTCCCTCCCATCGTAGGCCTCACCCAAAAAGACGTCGGACAGATCATGGA
CGATCATCACCAGGGTGCCAATGCGGATGAAACTGAGGCAAGGAGGGAGG
GAGGGAGAGAGGAGGGCGGGAGGGAAGGAAGGTGAGATGCGAGGCAAGGG
ACGGAGAGAAACAGGAGAGAATCAAAGGAGGGAGGGAGAGAGGGAGGGAG
AGAGGAGGGGAGGGAGGGGCACGAACGAACCAGGACAGCCAAGAGAAGGC
TATGAGGAAAAGGGTGGCGGCGTGGTGGAGAAACATCTCCCAAAAATCGC
TCCGTTTGGTGTCGGTGAATTGGAAGAGAGACAGGTGGAGATAATTGCCG
AGCTGGTAGGCGTAGTAGAAGACCACAGGGGAAGGTACGGCTTGGAGGGG
ATAGCCGTACCTGGAGACGGAGGGAGGGAAAGGACGTGAGAGGTGGGAGG
GAGGGAGAGAGAAGTGGGAGTGCGCATGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGGCGTACGTACCAGCACTCCCGT
ATGTCCCAAAACCACAGCTGGGGAACCACACACACCCACGAGAGCCCCAC
TGCCGTTAGATACACACAGCTCCTCCAACACGCTTCCTTGAACTTGGCCA
GGCGCTTGTTCTCCCTCCCTTCCTGCCGTCGCCACCTGAAGTAGGCATGC
ACCCGCGCGATGCTTCCAGGTCGGTCCAACACCACCTGCCCTCCTTCCCG
CCCTCCGTTTTCATTGAAGGACAAGGAAGGCGACTTTGGGGGGGAAGAGA
CAGCGTAGGAAGGGAAGGAGGACGAGGGGGTGGTCAAGGTCAGGCACAGG
CGTCTCCTCCTCATGCCCTCCTCCTCTCCTCCTCCTCCAATACGGGGGAG
GGTGGGAGGGGTTGAGGGGAGGGAAGCCTCTGGAAAGACGTGGTCTTTCC
CTTCCTCTTTCACTCCTTTCGTTCTCCCTCCCTCCTCGTGGTCGAGGGCG
AGGCAGAGGGCCGTCATCTCGGGGGATGAGGGGGAGGGAGGGAAGGGGGA
GAGGGCGAAAGCCGCCTCCAGTGCTTCGACAGCCCTTGGCGCTCGGCTCC
TATCGTTAAGGTGGTAGTTGCTACTGCTGCTCCTCCTAGAGGAGGCTGAG
GAGAAGGGGGAGGAGGACGGAGAGGAGTAGGGAGACGAGGTGGAGGTGGA
GATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGCGGCGTCCGTGGCAG
CAGGAGCAACAGCAGCAAGGTGCTTGAGCTTCATGGCATATATTCCAAGA
GGCTGTGTTAAGGCAATGCATGTATGGAAGAGCCGATGAGTGCTTGAAAC
CAACATTTTTCTTTTACAGTTTTCACGCATGCAACAGGGGAAAAGTCGTC
CTCCCTCCCTCCCTCCGTCCCTCCCTTCATGTACCCCAAAGACGAGTCGA
TCCAGCACCGCGCGGAGAATACAAAGACCGAGAGCCACCCACACGCCATA
CAACAGGTGGTGGGAGGATGGAAAGAGCCTGATGGTCCAACGTGAGGGGC
GAGGGAGTGAGGGAGGGAGGGAGGAAGAAAAGGAAGGGGGGAGGGAGGTT
CGGGGTTCAGCGATGGAAGAAGCAATAAACCGATGAAAATCACCATACCC
ACCATATTTGATCATCTATCGACAACTATTCCACGTTCAAGCCCTCGGCA
TGCTTTCAACGCCCCCCTTTTTTTCCAGGAAGCAGCCCACCTTTCCCTTC
CTCGCTTCCTTCCTTCCTCCCCTCTCTTACCTTTCCCCCCGCTGCGCCGC
CATGAGCACTTTCCCGCTCTTAACAGCATCGGGAAAAAGCCATAAGTAGT
TGGTAACAGGCACCATCAATTGTTCTCTCCATAAGGCCCAATCTTTGCTT
TGTGCGATGCCACTAACGCTTGGAACTGCCGCGGAGATCGTCTCCCAGAG
GATCGCAACCGGGGACGTAGGAAAGGACATACTTTGCCGGTCAAGGCGGG
AGAGAAGAGTGAAGGGTATTATTATTACGCTGGTTGAAAAATTGGAGGAG
GTAAGTCGGGACGTTTAGACAGGGTTGTAGGAGGGAGTGCAAGAAGGAAG
GATGCTGAGGGCAGGAGACAGAGGAGGTAAGCGTAGTGGCGCTTTTGTTT
CGCTGCGTGCAGCGTCTTGGTGCTTCCCCAGCAGCGACCCTTGATGAACT
TTACAAATACACGCTTGTTCACGTGAAGAGGCCCCTGCGGAAGGGATGAG
GGGGGGATTCAGGGAGGGTGAGACAAAAGAGCACGAATGCGCCCGCCTTC
CGGTCGCGTTCTTTTCCACAAATGCACACGACGCCGCTCCCGCCGATGCC
GCCAGGGTAGGCCACGCTGCTGTCTTGTACTGTTTATTTGGATCGAGGTG
CCATCCAGAGTATCATTGCGAAGCGGCGGTCAAGCAGCGATGCAAATCTA
GAACAAGGATCATTCTCAAATCCAACTGGGGAACCTAAAACAATTTCAAC
ACACGAGACAGCTGCAGGCGCTCAGCGACGAATGCGGGCAGCGATGACCA
TCATGATGCCTTCCACCCACTCCCACCTCTACCAGGTTCACAATCTACAC
GTCCACAATCGTACCTTAACCATTCATAGGCACCGTTTCCAAGCTATTCA
AGCCTGAAGCGCCAAGTCAACCTCATTGCCGACACTCTGCACCTTTTAGC
CTCCCAAGCCACCACCACCCCAACGAAGTCACCACCCAGTCAGTCAAGCA
AATAAGATGAACCCCATTCAGAACATTCCACCGCACCAGCGCCAAGAATT
TATGCGCACCTTGGAGGAGCTCCAGGTCAAGGACTCGTTGCTGTGAGTGT
GCGCTCGATAGGGAAGAGGAGGGGAAAAGGGAAGGAGAGCGGTGGTGTGG
AGGGGAGGTCGGAGAGACGGGATGACATGCATACTTTCTCCGCATAAACA
TACACTTACACGAACACACGACAGCATGTACAATCGGCTGGTAGAGCGAT
GCTTCAAGGAATGCGTCACAGTACGTTTCTTAATTTTCTGGATATTGGTT
TTGGCGCGTGGATATTGGGAAATAGGCATTGATTGCGTTTTATGTGGGCG
AGAGGCGGATGGAGTCAAGCAGCTTCGGCTCTCTCTCTTACACCTGCACA
CATATATATGATAGACAGCAAACTTTCGTCCTCTCGTAGATCTCGTTCCC
TTGTTTTCTTCTTCCCCCTGTTCTCTCATTGAGCCCGCCCTCCCCGCCCC
ACATCCACCTTCACCTTCATCACATCACAGCGTTTTCGTTCCAAGAAGAT
GGACGACGGAGAGCTCTCGTGCGTTTCTCGTTGCGCTGAGAAATATCTCA
AGTTGACTTCACGGGCAGGCTTTCGCTTTGCAGAATTTCAATCGCAACAA
TCAGGGGCTGAGGGGGGGGGCATGCCGCCACCTTCGTAGGAGGAGGGAGA
GGAGGGCACAAGAGAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA
AGAAGAAGAAAAGGGGGAGAAGTCGAGATGACAAACATTTAAAAAAGAAT
GAGACACCATTCAAAGCTGGACCAAGCAACACCAAATGACACACAATGTG
AAGGATCAACAGAAGGCATGGAGAGATGATGAAGCGTAAGTAGCCGGGAG
AGGCAGGGGCAGGAGACAGTCGGAGAAGGAGATAAGGAGAGCATCGAAGC
TAGTCGTGTCAAAAACGTAAAGAAAGAGCAGAAGTTTTTCTGAC
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Coding sequence (CDS) from alignment at chr9:1065721..1071564+

>NO09G03710.1 ID=NO09G03710.1|Name=NO09G03710.1|organism=Nannochloropsis oceanica|type=CDS|length=258bp|location=Sequence derived from alignment at chr9:1065721..1071564+ (Nannochloropsis oceanica)
ATGACATGCATACTTTCTCCGCATAAACATACACTTACACGAACACACGA
CAGCATGTACAATCGGCTGGTAGAGCGATGCTTCAAGGAATGCGTCACAC
GTTTTCGTTCCAAGAAGATGGACGACGGAGAGCTCTCGTGCGTTTCTCGT
TGCGCTGAGAAATATCTCAAGTTGACTTCACGGGCAGGCTTTCGCTTTGC
AGAATTTCAATCGCAACAATCAGGGGCTGAGGGGGGGGGCATGCCGCCAC
CTTCGTAG
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Synonyms
Publications