NO09G03340, NO09G03340 (gene) Nannochloropsis oceanica

Overview
NameNO09G03340
Unique NameNO09G03340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1371
Alignment locationchr9:963529..964899 -

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Properties
Property NameValue
DescriptionDihydrolipoyllysine-residue acetyltransferase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:963529..964899 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011053Single_hybrid_motif
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Homology
BLAST of NO09G03340 vs. NCBI_GenBank
Match: EWM27468.1 (dihydrolipoyllysine-residue acetyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 203.0 bits (515), Expect = 8.100e-49
Identity = 102/166 (61.45%), Postives = 122/166 (73.49%), Query Frame = 0
Query:   10 GRCACRRPPARPPPCFSSTRSSGPTPSSLLLVPLPKLAPHMTSGKVRWLKAEGEAFACYDIIAEVSTSTLVEEAYRDGKFKGEVTLLIEAQEDGYLARIFQHDHTNDIPVGTPVGVLCEEINELADTAAVAAVAQVGSALPKDLYSPEAQQKWRVWGGWQAYLKDG 176
            GR    +P AR         S+G   S+L+L+PLPKLAPHM SG++ WLKA GEAF CYDI+AEV+TSTLVEEA+R+G+F GEVTLL+EAQEDGYLA  F  D +  +PVGT +G+LCEE  EL +T AVA  + V   LPKDLY PE QQKWR+W GWQAYLK G
Sbjct:   12 GRYTRHQPVARCVTSSGPQVSTGCISSNLVLIPLPKLAPHMKSGRINWLKAPGEAFLCYDIVAEVTTSTLVEEAHREGEFAGEVTLLLEAQEDGYLACTFHSDPSKTLPVGTLIGILCEEEAELPETMAVATASDV-KKLPKDLYDPEVQQKWRIWNGWQAYLKKG 176          
BLAST of NO09G03340 vs. NCBI_GenBank
Match: GAX84838.1 (hypothetical protein CEUSTIGMA_g12259.t1 [Chlamydomonas eustigma])

HSP 1 Score: 95.9 bits (237), Expect = 1.400e-16
Identity = 49/109 (44.95%), Postives = 71/109 (65.14%), Query Frame = 0
Query:   26 SSTRSSGPTPSSLLLVPLPKLAPHMTSGK-VRWLKAEGEAFACYDIIAEVSTSTLVEEAYRDGKFKGEVTLLIEAQEDGYLARIFQHDHTNDIPVGTPVGVLCEEINEL 134
            +S+ ++ P+ +S  +V LPKL+  MT GK ++WLK+ G+    YD++ EV T  LVE  ++ G F GEVTLL+E+QE+GYLA I      + +PVG PV VL E   +L
Sbjct:   67 ASSVAASPSTASHQIVTLPKLSHQMTQGKLIKWLKSPGDHIHMYDVLMEVETEELVENVFKVGDFAGEVTLLVESQEEGYLAEILVDAGPSLVPVGRPVAVLVESQEDL 175          
BLAST of NO09G03340 vs. NCBI_GenBank
Match: XP_002945888.1 (hypothetical protein VOLCADRAFT_86312 [Volvox carteri f. nagariensis] >EFJ52883.1 hypothetical protein VOLCADRAFT_86312 [Volvox carteri f. nagariensis])

HSP 1 Score: 92.0 bits (227), Expect = 2.000e-15
Identity = 49/131 (37.40%), Postives = 80/131 (61.07%), Query Frame = 0
Query:   38 LLLVPLPKLAPHMTSGKV-RWLKAEGEAFACYDIIAEVSTSTLVEEAYRDGKFKGEVTLLIEAQEDGYLARIFQHDHTNDIPVGTPVGVLCEEINELADTAAVAAVAQVGS-----------ALPKDLYSP 157
            ++++P+PKL+  MTSG++ +W   EG +   YD++  V T TLVEEAYR  +F G+V LL+E+QE+G++AR+   +   ++PVG P+ +LCE  +E+    A    A++G             LP  +Y+P
Sbjct:   29 VIVLPMPKLSHAMTSGRIAKWHVEEGASVNTYDVLLTVETETLVEEAYRLDQFAGKVALLVESQEEGFVARLLAAE-GEEVPVGKPIALLCEREDEVPAARASIEWARLGDVYDSTCNPREVGLPGGVYTP 158          
BLAST of NO09G03340 vs. NCBI_GenBank
Match: XP_013895221.1 (hypothetical protein MNEG_11761 [Monoraphidium neglectum] >KIY96201.1 hypothetical protein MNEG_11761 [Monoraphidium neglectum])

HSP 1 Score: 87.4 bits (215), Expect = 4.900e-14
Identity = 56/126 (44.44%), Postives = 71/126 (56.35%), Query Frame = 0
Query:   56 RWLKAEGEAFACYDIIAEVSTSTLVEEAYRDGKFKGEVTLLIEAQEDGYLARIFQHDHTNDIPVGTPVGVLCEEINELADTAAV----AAVAQVGSALPKDLYSPEAQQKWRVWGGWQAYLKDGGD 178
            RWLKAEG+    YD++ EV T  LVEEAYR G F G VTLLIE+QEDG LAR    +    +PVG P+ V+ EE               A A+  +   KD+Y  E+Q   RV   WQ+YLK+  +
Sbjct:    8 RWLKAEGKRVQQYDLLCEVDTQQLVEEAYRLGDFAGSVTLLIESQEDGVLARRLAPEGAT-LPVGAPIAVVWEESGXXXXXXXXXXXRLAAARRHTPPTKDVYD-ESQPSVRVL-EWQSYLKESSE 130          
BLAST of NO09G03340 vs. NCBI_GenBank
Match: KXZ45833.1 (hypothetical protein GPECTOR_50g627 [Gonium pectorale])

HSP 1 Score: 84.3 bits (207), Expect = 4.200e-13
Identity = 52/134 (38.81%), Postives = 77/134 (57.46%), Query Frame = 0
Query:   50 MTSGKV-RWLKAEGEAFACYDIIAEVSTSTLVEEAYRDGKFKGEVTLLIEAQEDGYLARIFQHDHTNDIPVGTPVGVLCEEINELADTAAVAAVAQVGSA-LPKDLYSPEAQQKWRVWGGWQAYLKDGGDGGDC 182
            MTSG++ +W   EG A + YD++  V T +LVEEA++  +F G V LL+E+QE+G++A +   +  +++PVG PV VLCE + ELA     A    VGS  L + + S       R+   WQ+YL  G     C
Sbjct:    1 MTSGRITKWHVTEGAAVSMYDVLMTVETESLVEEAFKVDQFAGTVALLVESQEEGFVAGLLAAE-GDEVPVGRPVAVLCERLEELA-----AVREAVGSGELLRGVDSVYESAPMRLL-EWQSYLAQGPKSSGC 127          
BLAST of NO09G03340 vs. NCBI_GenBank
Match: XP_001697986.1 (predicted protein [Chlamydomonas reinhardtii])

HSP 1 Score: 75.9 bits (185), Expect = 1.500e-10
Identity = 44/128 (34.38%), Postives = 75/128 (58.59%), Query Frame = 0
Query:   32 GPTPSS-LLLVPLPKLAPHMTSGKV-RWLKAEGEA-----------FACYDIIAEVSTSTLVEEAYRDGKFKGEVTLLIEAQEDGYLARIFQHDHTNDIPVGTPVGVLCEEINELADTAAVAAVAQVG 147
            G  P+  L+ +P+PKL+  MT G++ +W   + ++            + YDI+  V T +LVEEAYR  +F G V+LL+E+QE+ ++A +   +   ++ VG P+ VLCE+  + A   + AA+A+ G
Sbjct:   86 GSVPADRLIWLPMPKLSHEMTHGRIAKWHVGDSDSGSGADPGRPTHVSEYDILLTVDTDSLVEEAYRLDQFAGTVSLLVESQEEAHVAGLLVAE-GEEVEVGRPIAVLCEDPEDAAAVRSAAAIAETG 212          
BLAST of NO09G03340 vs. NCBI_GenBank
Match: XP_009139473.1 (PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial isoform X1 [Brassica rapa])

HSP 1 Score: 74.7 bits (182), Expect = 3.300e-10
Identity = 44/136 (32.35%), Postives = 79/136 (58.09%), Query Frame = 0
Query:   30 SSGPTPSSLLLVPLPKLAPHMTSGKV-RWLKAEGEAFACYDIIAEVSTSTLVEEAYRDGKFKGEVTLLIEAQEDGYLARIFQHDHTNDIPVGTPVGVLCEEINELADTAAVAAVAQVG---SALPKDLYSPEAQQK 162
            SSGPTP ++L   +P L+P M+ G + +WLK EG+     D++ E+ T               + T+ +E+QE+G+LA+I   + + DIPV  P+ ++ EE +++ + +AV    QVG   ++ P+++ S E+ Q+
Sbjct:   81 SSGPTPQTVL--TMPALSPTMSHGNIAKWLKKEGDKVEVGDVLCEIETD--------------KATVELESQEEGFLAKIVVTEGSKDIPVNAPIAIMVEEEDDIQNVSAVEG-GQVGKEETSAPQEMKSEESTQQ 199          
BLAST of NO09G03340 vs. NCBI_GenBank
Match: XP_009139474.1 (PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial isoform X2 [Brassica rapa])

HSP 1 Score: 74.7 bits (182), Expect = 3.300e-10
Identity = 44/136 (32.35%), Postives = 79/136 (58.09%), Query Frame = 0
Query:   30 SSGPTPSSLLLVPLPKLAPHMTSGKV-RWLKAEGEAFACYDIIAEVSTSTLVEEAYRDGKFKGEVTLLIEAQEDGYLARIFQHDHTNDIPVGTPVGVLCEEINELADTAAVAAVAQVG---SALPKDLYSPEAQQK 162
            SSGPTP ++L   +P L+P M+ G + +WLK EG+     D++ E+ T               + T+ +E+QE+G+LA+I   + + DIPV  P+ ++ EE +++ + +AV    QVG   ++ P+++ S E+ Q+
Sbjct:   79 SSGPTPQTVL--TMPALSPTMSHGNIAKWLKKEGDKVEVGDVLCEIETD--------------KATVELESQEEGFLAKIVVTEGSKDIPVNAPIAIMVEEEDDIQNVSAVEG-GQVGKEETSAPQEMKSEESTQQ 197          
BLAST of NO09G03340 vs. NCBI_GenBank
Match: XP_003059500.1 (predicted protein [Micromonas pusilla CCMP1545] >EEH56632.1 predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 73.9 bits (180), Expect = 5.700e-10
Identity = 51/137 (37.23%), Postives = 66/137 (48.18%), Query Frame = 0
Query:   26 SSTRSSGPTPSSLLLVPLPKLAPHMTSGKV-RWLKAEGEAFACYDIIAEVSTSTLVEEAYRDGKFKGEVTLLIEAQEDGYLARIFQHDHTNDIPVGTPVGVLCEE---INELADTAAVAAVAQVGSALPKDLYSPEA 159
            SS  SS   PS   +VP P L+P MT G +  W K EGE  A  DI+AE+ T               + T+ +E+ EDG++A+I   +   D+PVG PV VLCEE   +    D    A  A    A P D  S  A
Sbjct:   61 SSAASSDDLPSH-QIVPFPSLSPTMTHGGIAAWKKKEGEFVAAGDILAEIQTD--------------KATMEMESMEDGWVAKILVAEGAEDVPVGKPVAVLCEEQDAVGAFKDYVPPAEDASPSGASPADAASASA 182          
BLAST of NO09G03340 vs. NCBI_GenBank
Match: XP_013742727.1 (dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial-like [Brassica napus])

HSP 1 Score: 73.6 bits (179), Expect = 7.400e-10
Identity = 43/136 (31.62%), Postives = 79/136 (58.09%), Query Frame = 0
Query:   30 SSGPTPSSLLLVPLPKLAPHMTSGKV-RWLKAEGEAFACYDIIAEVSTSTLVEEAYRDGKFKGEVTLLIEAQEDGYLARIFQHDHTNDIPVGTPVGVLCEEINELADTAAVAAVAQVG---SALPKDLYSPEAQQK 162
            S+GPTP ++L   +P L+P M+ G + +WLK EG+     D++ E+ T               + T+ +E+QE+G+LA+I   + + DIPV  P+ ++ EE +++ + +AV    QVG   ++ P+++ S E+ Q+
Sbjct:   81 STGPTPQTVL--TMPALSPTMSHGNIAKWLKKEGDKVEVGDVLCEIETD--------------KATVELESQEEGFLAKIVVTEGSKDIPVNAPIAIMVEEEDDIQNVSAVEG-GQVGKEETSAPQEMKSEESTQQ 199          
The following BLAST results are available for this feature:
BLAST of NO09G03340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27468.18.100e-4961.45dihydrolipoyllysine-residue acetyltransferase [Nan... [more]
GAX84838.11.400e-1644.95hypothetical protein CEUSTIGMA_g12259.t1 [Chlamydo... [more]
XP_002945888.12.000e-1537.40hypothetical protein VOLCADRAFT_86312 [Volvox cart... [more]
XP_013895221.14.900e-1444.44hypothetical protein MNEG_11761 [Monoraphidium neg... [more]
KXZ45833.14.200e-1338.81hypothetical protein GPECTOR_50g627 [Gonium pector... [more]
XP_001697986.11.500e-1034.38predicted protein [Chlamydomonas reinhardtii][more]
XP_009139473.13.300e-1032.35PREDICTED: dihydrolipoyllysine-residue acetyltrans... [more]
XP_009139474.13.300e-1032.35PREDICTED: dihydrolipoyllysine-residue acetyltrans... [more]
XP_003059500.15.700e-1037.23predicted protein [Micromonas pusilla CCMP1545] >E... [more]
XP_013742727.17.400e-1031.62dihydrolipoyllysine-residue acetyltransferase comp... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL123nonsL123Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010877NSK010877Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G03340.1NO09G03340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588360gene_4210Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100257g2gene3091Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G03340.1NO09G03340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G03340 ID=NO09G03340|Name=NO09G03340|organism=Nannochloropsis oceanica|type=gene|length=1371bp
CGGATATCTTTTGCCTTCACAATTCTCACATAAACCCGTAAACCCAAACA
TCCAACCATTTCAAGACGGTCATGCATCGTCTGGCCTTCCAGGCGGCGGG
TCGTTGCGCCTGTCGTCGTCCTCCCGCACGACCCCCACCCTGCTTCTCCT
CCACCCGCAGCTCAGGTCCAACACCCTCAAGCCTCCTCCTGGTCCCGCTG
CCGAAGCTGGCCCCGCACATGACTAGCGGCAAGGTGCGATGGCTCAAGGC
AGAAGGAGAAGCATTTGCATGTTACGACATCATTGCCGAAGTATCGACAT
CGACCTTGGTCGAGGAAGCGTATCGCGACGGCAAATTTAAGGGAGAGGTG
ACCCTGTTGATTGAGGCACAAGAAGACGGCTACCTGGCCCGGATCTTTCA
GCACGACCACACAAACGACATACCTGTGGGTACACCAGTAGGTGTGCTTT
GCGAGGAAATAAACGAGCTGGCCGATACGGCGGCGGTAGCAGCGGTGGCC
CAGGTGGGGTCGGCATTGCCAAAGGACTTGTATTCACCCGAGGCCCAACA
GAAGTGGCGAGTATGGGGCGGGTGGCAAGCCTACTTGAAAGATGGGGGAG
ATGGTGGAGACTGCAGCAGTTGATGTGCTTAGAGGATACGGTCGGAGATA
CGgtaagcgtgtcttatcgacgagagtggaataaatgatgttgtgcacca
agtgtgcctttttgcccccacggacacttttgcctccatgcgtcatgtgg
tcttcctttacaaaggcacgagaaacaattttccaggcggtctagttctg
cggatcgagactggaggcgtcatgcctctgacgactgattcgctttgaaa
ggcctgccaaattcctcatcatgctcaggtgtctaaatgtgtaagagttt
gaacggatgcatgactgagtcaatagtgttgtctgcgtatgcttgtgtgc
ttgtgtgcctatatgtctgatctttctcattcatgcgatgctgtctaaat
ctaggagaatcgtctttctacattctgcggcgcatgaaaaaaagtgaaat
atctgacagctaattctcctacccgtccttgcctctctccctccaatccc
tctctctcgtccttctcccctcaaacctagGTTTTTAGCTTCCCTCATTC
TAATCTACAGCAATTGTTGTTAGCTGTAAGGCGCTCTGGGTTGGATGCTT
ACCTCGATGGGGTGCTAAACAAGGAGGACTGATGTAGAAAGCCAACAGAA
ATTGTGAACAAATGCTATATAACAGCCATGTACATGAAGACGGAAACAGA
GATTTTTGATGAGCAAAGAGATTGGAAGAACACGTATTTAAATGAAAGGC
AGGTGAATTTACTCTCGTTTC
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protein sequence of NO09G03340.1

>NO09G03340.1-protein ID=NO09G03340.1-protein|Name=NO09G03340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp
MHRLAFQAAGRCACRRPPARPPPCFSSTRSSGPTPSSLLLVPLPKLAPHM
TSGKVRWLKAEGEAFACYDIIAEVSTSTLVEEAYRDGKFKGEVTLLIEAQ
EDGYLARIFQHDHTNDIPVGTPVGVLCEEINELADTAAVAAVAQVGSALP
KDLYSPEAQQKWRVWGGWQAYLKDGGDGGDCSS*
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Synonyms
Publications