NO09G03340.1, NO09G03340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03340.1
Unique NameNO09G03340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length893
Alignment locationchr9:963529..964899 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:963529..964899 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G03340.1 vs.
Match: EWM27468.1 (dihydrolipoyllysine-residue acetyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 203.0 bits (515), Expect = 8.100e-49
Identity = 102/166 (61.45%), Postives = 122/166 (73.49%), Query Frame = 0 
Query:   10 GRCACRRPPARPPPCFSSTRSSGPTPSSLLLVPLPKLAPHMTSGKVRWLKAEGEAFACYDIIAEVSTSTLVEEAYRDGKFKGEVTLLIEAQEDGYLARIFQHDHTNDIPVGTPVGVLCEEINELADTAAVAAVAQVGSALPKDLYSPEAQQKWRVWGGWQAYLKDG 176
            GR    +P AR         S+G   S+L+L+PLPKLAPHM SG++ WLKA GEAF CYDI+AEV+TSTLVEEA+R+G+F GEVTLL+EAQEDGYLA  F  D +  +PVGT +G+LCEE  EL +T AVA  + V   LPKDLY PE QQKWR+W GWQAYLK G
Sbjct:   12 GRYTRHQPVARCVTSSGPQVSTGCISSNLVLIPLPKLAPHMKSGRINWLKAPGEAFLCYDIVAEVTTSTLVEEAHREGEFAGEVTLLLEAQEDGYLACTFHSDPSKTLPVGTLIGILCEEEAELPETMAVATASDV-KKLPKDLYDPEVQQKWRIWNGWQAYLKKG 176
The following BLAST results are available for this feature:
BLAST of NO09G03340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27468.18.100e-4961.45dihydrolipoyllysine-residue acetyltransferase [Nan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03340NO09G03340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03340.1NO09G03340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03340.1.cds1NO09G03340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03340.1 ID=NO09G03340.1|Name=NO09G03340.1|organism=Nannochloropsis oceanica|type=mRNA|length=893bp
CGGATATCTTTTGCCTTCACAATTCTCACATAAACCCGTAAACCCAAACA
TCCAACCATTTCAAGACGGTCATGCATCGTCTGGCCTTCCAGGCGGCGGG
TCGTTGCGCCTGTCGTCGTCCTCCCGCACGACCCCCACCCTGCTTCTCCT
CCACCCGCAGCTCAGGTCCAACACCCTCAAGCCTCCTCCTGGTCCCGCTG
CCGAAGCTGGCCCCGCACATGACTAGCGGCAAGGTGCGATGGCTCAAGGC
AGAAGGAGAAGCATTTGCATGTTACGACATCATTGCCGAAGTATCGACAT
CGACCTTGGTCGAGGAAGCGTATCGCGACGGCAAATTTAAGGGAGAGGTG
ACCCTGTTGATTGAGGCACAAGAAGACGGCTACCTGGCCCGGATCTTTCA
GCACGACCACACAAACGACATACCTGTGGGTACACCAGTAGGTGTGCTTT
GCGAGGAAATAAACGAGCTGGCCGATACGGCGGCGGTAGCAGCGGTGGCC
CAGGTGGGGTCGGCATTGCCAAAGGACTTGTATTCACCCGAGGCCCAACA
GAAGTGGCGAGTATGGGGCGGGTGGCAAGCCTACTTGAAAGATGGGGGAG
ATGGTGGAGACTGCAGCAGTTGATGTGCTTAGAGGATACGGTCGGAGATA
CGGTTTTTAGCTTCCCTCATTCTAATCTACAGCAATTGTTGTTAGCTGTA
AGGCGCTCTGGGTTGGATGCTTACCTCGATGGGGTGCTAAACAAGGAGGA
CTGATGTAGAAAGCCAACAGAAATTGTGAACAAATGCTATATAACAGCCA
TGTACATGAAGACGGAAACAGAGATTTTTGATGAGCAAAGAGATTGGAAG
AACACGTATTTAAATGAAAGGCAGGTGAATTTACTCTCGTTTC
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protein sequence of NO09G03340.1

>NO09G03340.1-protein ID=NO09G03340.1-protein|Name=NO09G03340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp
MHRLAFQAAGRCACRRPPARPPPCFSSTRSSGPTPSSLLLVPLPKLAPHM
TSGKVRWLKAEGEAFACYDIIAEVSTSTLVEEAYRDGKFKGEVTLLIEAQ
EDGYLARIFQHDHTNDIPVGTPVGVLCEEINELADTAAVAAVAQVGSALP
KDLYSPEAQQKWRVWGGWQAYLKDGGDGGDCSS*
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mRNA from alignment at chr9:963529..964899-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03340.1 ID=NO09G03340.1|Name=NO09G03340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1371bp|location=Sequence derived from alignment at chr9:963529..964899- (Nannochloropsis oceanica)
CGGATATCTTTTGCCTTCACAATTCTCACATAAACCCGTAAACCCAAACA
TCCAACCATTTCAAGACGGTCATGCATCGTCTGGCCTTCCAGGCGGCGGG
TCGTTGCGCCTGTCGTCGTCCTCCCGCACGACCCCCACCCTGCTTCTCCT
CCACCCGCAGCTCAGGTCCAACACCCTCAAGCCTCCTCCTGGTCCCGCTG
CCGAAGCTGGCCCCGCACATGACTAGCGGCAAGGTGCGATGGCTCAAGGC
AGAAGGAGAAGCATTTGCATGTTACGACATCATTGCCGAAGTATCGACAT
CGACCTTGGTCGAGGAAGCGTATCGCGACGGCAAATTTAAGGGAGAGGTG
ACCCTGTTGATTGAGGCACAAGAAGACGGCTACCTGGCCCGGATCTTTCA
GCACGACCACACAAACGACATACCTGTGGGTACACCAGTAGGTGTGCTTT
GCGAGGAAATAAACGAGCTGGCCGATACGGCGGCGGTAGCAGCGGTGGCC
CAGGTGGGGTCGGCATTGCCAAAGGACTTGTATTCACCCGAGGCCCAACA
GAAGTGGCGAGTATGGGGCGGGTGGCAAGCCTACTTGAAAGATGGGGGAG
ATGGTGGAGACTGCAGCAGTTGATGTGCTTAGAGGATACGGTCGGAGATA
CGGTAAGCGTGTCTTATCGACGAGAGTGGAATAAATGATGTTGTGCACCA
AGTGTGCCTTTTTGCCCCCACGGACACTTTTGCCTCCATGCGTCATGTGG
TCTTCCTTTACAAAGGCACGAGAAACAATTTTCCAGGCGGTCTAGTTCTG
CGGATCGAGACTGGAGGCGTCATGCCTCTGACGACTGATTCGCTTTGAAA
GGCCTGCCAAATTCCTCATCATGCTCAGGTGTCTAAATGTGTAAGAGTTT
GAACGGATGCATGACTGAGTCAATAGTGTTGTCTGCGTATGCTTGTGTGC
TTGTGTGCCTATATGTCTGATCTTTCTCATTCATGCGATGCTGTCTAAAT
CTAGGAGAATCGTCTTTCTACATTCTGCGGCGCATGAAAAAAAGTGAAAT
ATCTGACAGCTAATTCTCCTACCCGTCCTTGCCTCTCTCCCTCCAATCCC
TCTCTCTCGTCCTTCTCCCCTCAAACCTAGGTTTTTAGCTTCCCTCATTC
TAATCTACAGCAATTGTTGTTAGCTGTAAGGCGCTCTGGGTTGGATGCTT
ACCTCGATGGGGTGCTAAACAAGGAGGACTGATGTAGAAAGCCAACAGAA
ATTGTGAACAAATGCTATATAACAGCCATGTACATGAAGACGGAAACAGA
GATTTTTGATGAGCAAAGAGATTGGAAGAACACGTATTTAAATGAAAGGC
AGGTGAATTTACTCTCGTTTC
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Coding sequence (CDS) from alignment at chr9:963529..964899-

>NO09G03340.1 ID=NO09G03340.1|Name=NO09G03340.1|organism=Nannochloropsis oceanica|type=CDS|length=552bp|location=Sequence derived from alignment at chr9:963529..964899- (Nannochloropsis oceanica)
ATGCATCGTCTGGCCTTCCAGGCGGCGGGTCGTTGCGCCTGTCGTCGTCC
TCCCGCACGACCCCCACCCTGCTTCTCCTCCACCCGCAGCTCAGGTCCAA
CACCCTCAAGCCTCCTCCTGGTCCCGCTGCCGAAGCTGGCCCCGCACATG
ACTAGCGGCAAGGTGCGATGGCTCAAGGCAGAAGGAGAAGCATTTGCATG
TTACGACATCATTGCCGAAGTATCGACATCGACCTTGGTCGAGGAAGCGT
ATCGCGACGGCAAATTTAAGGGAGAGGTGACCCTGTTGATTGAGGCACAA
GAAGACGGCTACCTGGCCCGGATCTTTCAGCACGACCACACAAACGACAT
ACCTGTGGGTACACCAGTAGGTGTGCTTTGCGAGGAAATAAACGAGCTGG
CCGATACGGCGGCGGTAGCAGCGGTGGCCCAGGTGGGGTCGGCATTGCCA
AAGGACTTGTATTCACCCGAGGCCCAACAGAAGTGGCGAGTATGGGGCGG
GTGGCAAGCCTACTTGAAAGATGGGGGAGATGGTGGAGACTGCAGCAGTT
GA
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Synonyms
Publications