NO09G03030, NO09G03030 (gene) Nannochloropsis oceanica

Overview
NameNO09G03030
Unique NameNO09G03030
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2020
Alignment locationchr9:884589..886608 -

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Properties
Property NameValue
DescriptionProtein rer1a
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:884589..886608 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR004932Rer1
Homology
BLAST of NO09G03030 vs. NCBI_GenBank
Match: KUF77866.1 (RER1 protein [Phytophthora nicotianae] >KUF98052.1 RER1 protein [Phytophthora nicotianae])

HSP 1 Score: 220.7 bits (561), Expect = 3.700e-54
Identity = 106/168 (63.10%), Postives = 133/168 (79.17%), Query Frame = 0
Query:    7 DPSFVEQVAVSLQRKWQHILDRSTVYVGLRWVIFVVMLGLYALRVFYINGWFIVTYGLGIYLLNNFIGFLSPQMDPESEGPLLPTNEREEYRPFARRLPEFKFWYQCAKATWVAFGMTFFDFFDVPVYWPILLLYFISLFVLTMKRQIRHMIKHRYVPWSNGKAKYAG 175
            +P F+ +V+VS++RKWQ++LD+ST++V  RW + + +L LY +RVFY+N + IVTYGLGIYLLN FIGFLSPQMD ES+GPLLP  + EE+RPF RR+PEF+FWY   KAT V+  MT    FDVPV+WPILL+YFI LF LTMKRQI+HM KH YVPW +GK  Y G
Sbjct:  605 EPPFIARVSVSIKRKWQYLLDKSTIHVYGRWGVALGLLALYLVRVFYLNAFHIVTYGLGIYLLNLFIGFLSPQMDMESDGPLLPHKQSEEFRPFTRRVPEFQFWYSTFKATIVSLLMTLSSAFDVPVFWPILLIYFIVLFALTMKRQIKHMWKHNYVPWDHGKQVYKG 772          
BLAST of NO09G03030 vs. NCBI_GenBank
Match: XP_024582120.1 (protein rer1a [Plasmopara halstedii] >CEG45751.1 protein rer1a [Plasmopara halstedii])

HSP 1 Score: 219.9 bits (559), Expect = 6.400e-54
Identity = 106/168 (63.10%), Postives = 132/168 (78.57%), Query Frame = 0
Query:    7 DPSFVEQVAVSLQRKWQHILDRSTVYVGLRWVIFVVMLGLYALRVFYINGWFIVTYGLGIYLLNNFIGFLSPQMDPESEGPLLPTNEREEYRPFARRLPEFKFWYQCAKATWVAFGMTFFDFFDVPVYWPILLLYFISLFVLTMKRQIRHMIKHRYVPWSNGKAKYAG 175
            +P F+ +V+VS++RKWQH+LD+ST+YV  RW + + +L LY +RVFY+N + IVTYGLGIYLLN FIGFLSPQ+D E +GPLLP  + EE+RPF RR+PEF FWY   KAT V+  MT    FDVPV+WPILL+YFI LF LTMKRQI+HM KH YVPW++GK  Y G
Sbjct:  519 EPPFIARVSVSIKRKWQHLLDKSTIYVYGRWSVALGLLLLYLVRVFYLNAFHIVTYGLGIYLLNLFIGFLSPQVDAEIDGPLLPHKQSEEFRPFTRRVPEFHFWYSTFKATVVSLLMTLSSAFDVPVFWPILLIYFIVLFALTMKRQIKHMWKHNYVPWNHGKQVYKG 686          
BLAST of NO09G03030 vs. NCBI_GenBank
Match: XP_009534178.1 (hypothetical protein PHYSODRAFT_518489 [Phytophthora sojae] >EGZ11433.1 hypothetical protein PHYSODRAFT_518489 [Phytophthora sojae])

HSP 1 Score: 219.5 bits (558), Expect = 8.300e-54
Identity = 105/168 (62.50%), Postives = 132/168 (78.57%), Query Frame = 0
Query:    7 DPSFVEQVAVSLQRKWQHILDRSTVYVGLRWVIFVVMLGLYALRVFYINGWFIVTYGLGIYLLNNFIGFLSPQMDPESEGPLLPTNEREEYRPFARRLPEFKFWYQCAKATWVAFGMTFFDFFDVPVYWPILLLYFISLFVLTMKRQIRHMIKHRYVPWSNGKAKYAG 175
            +P F+ +V+VS++RKWQ++LD+ST++V  RW + + +L LY +RVFY+N + IVTYGLGIYLLN FIGFLSPQ+D ESEGPLLP  + EE+RPF RR+PEF+FWY   KA  V+  MT    FDVPV+WPILL+YFI LF LTMKRQI+HM KH YVPW +GK  Y G
Sbjct:   11 EPPFIARVSVSIKRKWQYLLDKSTIHVYARWGVALGLLALYLVRVFYLNAFHIVTYGLGIYLLNLFIGFLSPQVDMESEGPLLPHKQSEEFRPFTRRVPEFQFWYSTFKAAIVSLLMTLSSAFDVPVFWPILLIYFIVLFALTMKRQIKHMWKHNYVPWDHGKQVYKG 178          
BLAST of NO09G03030 vs. NCBI_GenBank
Match: OWY96674.1 (Protein RER1A [Phytophthora megakarya])

HSP 1 Score: 218.8 bits (556), Expect = 1.400e-53
Identity = 105/168 (62.50%), Postives = 132/168 (78.57%), Query Frame = 0
Query:    7 DPSFVEQVAVSLQRKWQHILDRSTVYVGLRWVIFVVMLGLYALRVFYINGWFIVTYGLGIYLLNNFIGFLSPQMDPESEGPLLPTNEREEYRPFARRLPEFKFWYQCAKATWVAFGMTFFDFFDVPVYWPILLLYFISLFVLTMKRQIRHMIKHRYVPWSNGKAKYAG 175
            +P F+ +V+VS++RKWQ++LD+ST++V  RW + + +L LY +RVFY+N + IVTYGLGIYLLN FIGFLSPQ+D ESEGPLLP  + EE+RPF RR+PEF+FWY   KA  V+  MT    FDVPV+WPILL+YFI LF LTMKRQI+HM KH YVPW +GK  Y G
Sbjct:   11 EPPFIARVSVSIKRKWQYMLDKSTIHVYARWGVAIGLLLLYLVRVFYLNAFHIVTYGLGIYLLNLFIGFLSPQVDMESEGPLLPHKQSEEFRPFTRRVPEFQFWYSTFKAALVSLLMTLSSAFDVPVFWPILLIYFIVLFALTMKRQIKHMWKHNYVPWDHGKQVYKG 178          
BLAST of NO09G03030 vs. NCBI_GenBank
Match: CBN76594.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 217.2 bits (552), Expect = 4.100e-53
Identity = 104/174 (59.77%), Postives = 133/174 (76.44%), Query Frame = 0
Query:    2 MESDGDPSFVEQVAVSLQRKWQHILDRSTVYVGLRWVIFVVMLGLYALRVFYINGWFIVTYGLGIYLLNNFIGFLSPQMDPESEGPLLPTNEREEYRPFARRLPEFKFWYQCAKATWVAFGMTFFDFFDVPVYWPILLLYFISLFVLTMKRQIRHMIKHRYVPWSNGKAKYAGG 176
            ME  G  S ++  +  ++R +Q+ LDRS +Y   RW +F V + L+ LR++ + GWFIVTYGLGI+LLNN IGFLSPQ+DPESEGP LPT+  +E+RPF+RRLPEF+FW    K   +AFGMTFF  FD+PV+WPILL+YFI L  LTMKRQ++HMIKH+YVPW+ GKA Y GG
Sbjct:    1 MEDPGS-SKLDVYSAKIRRTYQYWLDRSVIYTMWRWGLFFVSVCLFLLRIYLVKGWFIVTYGLGIFLLNNLIGFLSPQIDPESEGPGLPTSGSDEFRPFSRRLPEFQFWLSSQKGLLMAFGMTFFSLFDIPVFWPILLIYFIVLMFLTMKRQVKHMIKHKYVPWNWGKATYKGG 173          
BLAST of NO09G03030 vs. NCBI_GenBank
Match: GBG30379.1 (Protein RER1 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 216.9 bits (551), Expect = 5.400e-53
Identity = 107/173 (61.85%), Postives = 135/173 (78.03%), Query Frame = 0
Query:    6 GDP---SFVEQVAVSLQRKWQHILDRSTVYVGLRWVIFVVMLGLYALRVFYINGWFIVTYGLGIYLLNNFIGFLSPQMDPESEGPLLPT--NEREEYRPFARRLPEFKFWYQCAKATWVAFGMTFFDFFDVPVYWPILLLYFISLFVLTMKRQIRHMIKHRYVPWSNGKAKYA 174
            GDP   S VE+    + R++QH+LD+STV++  RW  F  +L  Y +RV+ +NGWFIVTYGLGIYLLN FIGFLSPQ+DPE+EGP+LPT   + EEYRPF RR+PEFKFW++   A  V+ GMTFF FFD+PV+WPILL+YFI LFV+TM++QI HMIKH+YVP S GK  Y+
Sbjct:    4 GDPRPASAVEKFWAQVGRQYQHLLDKSTVHLKARWAAFAGLLLFYLIRVYMLNGWFIVTYGLGIYLLNMFIGFLSPQVDPETEGPVLPTAGRDTEEYRPFNRRVPEFKFWHKATVAVVVSIGMTFFSFFDIPVFWPILLVYFILLFVMTMRKQIAHMIKHKYVPVSWGKKTYS 176          
BLAST of NO09G03030 vs. NCBI_GenBank
Match: CCA23199.1 (protein RER1A putative [Albugo laibachii Nc14])

HSP 1 Score: 216.1 bits (549), Expect = 9.200e-53
Identity = 101/171 (59.06%), Postives = 132/171 (77.19%), Query Frame = 0
Query:    7 DPSFVEQVAVSLQRKWQHILDRSTVYVGLRWVIFVVMLGLYALRVFYINGWFIVTYGLGIYLLNNFIGFLSPQMDPESEGPLLPTNEREEYRPFARRLPEFKFWYQCAKATWVAFGMTFFDFFDVPVYWPILLLYFISLFVLTMKRQIRHMIKHRYVPWSNGKAKYAGGGE 178
            +PSF+ +V  S+ RKWQH+LDRST+YV  RW +  ++L  Y++RV Y+N + IVTYGLGIYLLN  IGFLSPQ+D E EGPLLP+ + EE+RPF R++PEF+FWY  AKAT+V+  +TF   FD+PV+WP+LL+YFI LF +TMKRQI+HM K+ YVPW+ GK  Y    E
Sbjct:  423 EPSFISRVTASIGRKWQHMLDRSTIYVSTRWTLAFLLLTTYSIRVLYLNAFHIVTYGLGIYLLNMLIGFLSPQID-EYEGPLLPSRQSEEFRPFTRKVPEFQFWYSVAKATFVSLLLTFNSTFDIPVFWPVLLIYFIILFAMTMKRQIKHMWKYNYVPWNRGKKVYGKASE 592          
BLAST of NO09G03030 vs. NCBI_GenBank
Match: XP_024402818.1 (protein RER1A-like [Physcomitrella patens] >PNR35552.1 hypothetical protein PHYPA_023452 [Physcomitrella patens])

HSP 1 Score: 214.9 bits (546), Expect = 2.100e-52
Identity = 105/172 (61.05%), Postives = 132/172 (76.74%), Query Frame = 0
Query:    3 ESDGDPSFVEQVAVSLQRKWQHILDRSTVYVGLRWVIFVVMLGLYALRVFYINGWFIVTYGLGIYLLNNFIGFLSPQMDPESEGPLLPTNEREEYRPFARRLPEFKFWYQCAKATWVAFGMTFFDFFDVPVYWPILLLYFISLFVLTMKRQIRHMIKHRYVPWSNGKAKYAG 175
            E D   + + +    + R++Q+ LD+ST + G+RWV  +V+  +Y LR +Y+ G++IVTYGLGIYLLN  IGFLSPQ+DPESEGP LPT   +E++PF RRLPEFKFWY   KA  VAF +TFF  FDVPV+WPILLLY+I LFVLTMKRQIRHMIK+RYVP+S GK +Y G
Sbjct:    8 EGDASSNALLKWRNQMGRRFQYYLDKSTPHAGMRWVATLVVAAIYCLRAYYVKGFYIVTYGLGIYLLNLLIGFLSPQVDPESEGPALPTKGSDEFKPFIRRLPEFKFWYAFTKALIVAFTLTFFSIFDVPVFWPILLLYWIVLFVLTMKRQIRHMIKYRYVPFSLGKQRYTG 179          
BLAST of NO09G03030 vs. NCBI_GenBank
Match: OQR92589.1 (protein RER1A [Achlya hypogyna])

HSP 1 Score: 214.9 bits (546), Expect = 2.100e-52
Identity = 101/159 (63.52%), Postives = 128/159 (80.50%), Query Frame = 0
Query:   20 RKWQHILDRSTVYVGLRWVIFVVMLGLYALRVFYINGWFIVTYGLGIYLLNNFIGFLSPQMDPESEGPLLPTNEREEYRPFARRLPEFKFWYQCAKATWVAFGMTFFDFFDVPVYWPILLLYFISLFVLTMKRQIRHMIKHRYVPWSNGKAKYAGGGEK 179
            RKWQH+LD+ST++V  RW+   V++ +Y  RV  IN + IVTYGLGIYLLN FIGFLSPQ+DPE+EGP+LP+ + EE+RPF+RR+PEFKFWY   KAT+ A  MTFF+ F++PV+WPILL+YFI LF LTMKRQI+HM KH YVPW++GK  Y G  +K
Sbjct:   46 RKWQHLLDQSTIHVTGRWIFSAVLIFVYLARVLSINSFHIVTYGLGIYLLNLFIGFLSPQIDPETEGPVLPSAKSEEFRPFSRRVPEFKFWYATTKATFYALLMTFFEIFNIPVFWPILLMYFIVLFTLTMKRQIKHMWKHNYVPWNHGKQVYKGKAQK 204          
BLAST of NO09G03030 vs. NCBI_GenBank
Match: KOO34716.1 (rer1a protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 214.5 bits (545), Expect = 2.700e-52
Identity = 97/155 (62.58%), Postives = 128/155 (82.58%), Query Frame = 0
Query:   20 RKWQHILDRSTVYVGLRWVIFVVMLGLYALRVFYINGWFIVTYGLGIYLLNNFIGFLSPQMDPESEGPLLPTNEREEYRPFARRLPEFKFWYQCAKATWVAFGMTFFDFFDVPVYWPILLLYFISLFVLTMKRQIRHMIKHRYVPWSNGKAKYAG 175
            RKWQH++D+S  +   RW++ ++++ +Y LRV++++GW+I+TYGLGIY+LN  IGFLSPQ+DPE+EGP LPT   +E+RPF RRLPEFKFWY   KA  VAF MTFF  F++PV+WPILLLYFI+LF LTMKRQI+HM+K+RYVP+S GK +Y G
Sbjct:   21 RKWQHLMDQSAPHTVPRWILTLLIVIIYCLRVYFLHGWYIITYGLGIYVLNLLIGFLSPQVDPEAEGPTLPTTRDDEFRPFIRRLPEFKFWYSLTKAFCVAFVMTFFSVFNIPVFWPILLLYFIALFALTMKRQIKHMVKYRYVPFSLGKTRYQG 175          
The following BLAST results are available for this feature:
BLAST of NO09G03030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
KUF77866.13.700e-5463.10RER1 protein [Phytophthora nicotianae] >KUF98052.1... [more]
XP_024582120.16.400e-5463.10protein rer1a [Plasmopara halstedii] >CEG45751.1 p... [more]
XP_009534178.18.300e-5462.50hypothetical protein PHYSODRAFT_518489 [Phytophtho... [more]
OWY96674.11.400e-5362.50Protein RER1A [Phytophthora megakarya][more]
CBN76594.14.100e-5359.77conserved unknown protein [Ectocarpus siliculosus][more]
GBG30379.15.400e-5361.85Protein RER1 [Aurantiochytrium sp. FCC1311][more]
CCA23199.19.200e-5359.06protein RER1A putative [Albugo laibachii Nc14][more]
XP_024402818.12.100e-5261.05protein RER1A-like [Physcomitrella patens] >PNR355... [more]
OQR92589.12.100e-5263.52protein RER1A [Achlya hypogyna][more]
KOO34716.12.700e-5262.58rer1a protein [Chrysochromulina sp. CCMP291][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G03030.1NO09G03030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588479gene_4241Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100099g9gene3060Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G03030.1NO09G03030.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G03030 ID=NO09G03030|Name=NO09G03030|organism=Nannochloropsis oceanica|type=gene|length=2020bp
AGGTCAAAGTCATTTCCCCGTCGTTGTCGTCGTAGACCTTCAAGCCTACT
TATAGGTTGCTCTGGGTGTCGTGCCCTGAAAAGTCTCCCTCCCAGAGAAG
GGCTTCTCTCGCTCAAAAGCGTTGCTTCGTGAGCGGAACCCTTGCATCTC
TGCACCACCTACCCACACGTAAGCCCCGCGCCGCGCGACAGACGCCTGTA
CAATGATGGAATCGGATGGAGATCCAAGCTTTGTGGAGCAGGTGGCAGTG
TCCCTGCAAAGgtacgtgctttatttactctaggtcttgtgtatgggtgg
gtggactgcgtgggtgggtcatgtggcgggtggtgtacgggtgaatgtgt
gtctggtgcttgaaaagcctcgctgctcatcattgtcgctatctggatat
ggtgtaatggcgttaggaaatgcgtgggtgagaagatgctcgatggattg
atggcatgtgtgagagggagagttactaagtctcttcccgctttacccac
catgctctcggtgaaacgttgtgcaatgcatgtttacctttgagatatgc
tcgtaagagtatgtgtgcatattcccgtgcgtttgatgcgatgatttctc
ttgtcggtagatagggctgtgcatcattgacatcttgacggacggaacca
tcaaccattgatcaccggatgcgctttcaccaccccatcaccaacccact
ctcgcccttccaacctatcttcagtctaacaatgaccatacacagtttga
aaatttctccacacaccatgtcagcccttggatgatcctcttggtggtcg
tgctcactatgttcacagcgcctttcgcgagttcaaaaattgcttaacaa
aaccccaatttttcccctcacgcgaacacagAAAATGGCAACACATCCTG
GATCGCTCCACCGTGTACGTCGGCCTTCGTTGGGTTATCTTTGTTGTCAT
GCTCGGCCTATACGCCTTACGTGTATTCTACATTAATGGCTGGTTCATTG
TGACCTACGGCTTGGGTATCTACCTCCTGAACAACTTTATCGGATTCCTT
TCCCCGCAGATGGACCCAGAATCAGAAGGTCCCTTACTACCAACGAATGA
GAGGGAAGAATATCGACCGTTTGCCCGACGGTTGCCGGAATTTAAATTTT
GGTACCAATGCGCGAAGGCGACATGGGTGGCATTTGGAATGACGTTTTTT
GATTTTTTTGACGTGCCGGTTTATTGGCCGATTCTCTTGTTGTACTTTAT
AAGTCTGTTTGTATTGACGATGAAGAGACAGATTCGGCATATGATCAAAC
ATCGGTACGTGCCGTGGAGTAACGGCAAGGCCAAGTATGCGGGAGGGGGA
GAGAAGCGGATGGCAGCGAAGTAAGTGCGGATAGCGTGGGAGGTGGTGAG
GCGTTAGACATAGAAAGAGAAAGGGAGACGATGGTGGACATGGCGCTGGA
GGTTTGAGACTTACTCTCTCTTTCCCTCCTGAACATGTGTGTGTGTACGC
GCGCGCGTGCGTGTATGTACGATAGATTCAAAACCAGAAAAAATGTTTTG
TTGGGCGTTATGGTTTGCTCCCTGGACAAATGAAACAGAAAGGGAAGCAG
TCGATCCTCCCCTTTGCTCTGTTGGCTCCTTGACAACAGACAGCGGTAAC
ACGTTCGCGAGAAGGATGATAGAAAATCCGCCCATGCTTTGGACAAAAGA
GCGACAGGTTAACCGACTCCAGGCGTTCAAAAGCCAACGGAAGGATGTTG
AGAGAAATAAGGAAGGGAAATGATGGAGGGAGAAGTCGAGGGAGCAGGGC
CACAGACGGAAAAACAAGAAACGTCTCGACGCTTCCCGGCGAGACGTTTC
TGCGGCCGATGCCATGGGAGGGGGGGAGGGAGGGGGAAGGCCATTACCTA
GGCCGTTCCCCTTCATCATCCTCCCCACGAAGGACCAACCACATGACAAC
ACCATCGATACACGCAATAAGTCAACAAGCAAACATGGCTGCGACCGACA
AACACCCGCACCTTGCATTA
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protein sequence of NO09G03030.1

>NO09G03030.1-protein ID=NO09G03030.1-protein|Name=NO09G03030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp
MMESDGDPSFVEQVAVSLQRKWQHILDRSTVYVGLRWVIFVVMLGLYALR
VFYINGWFIVTYGLGIYLLNNFIGFLSPQMDPESEGPLLPTNEREEYRPF
ARRLPEFKFWYQCAKATWVAFGMTFFDFFDVPVYWPILLLYFISLFVLTM
KRQIRHMIKHRYVPWSNGKAKYAGGGEKRMAAK*
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Synonyms
Publications