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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:884589..886608 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G03030.1 vs.
Match: XP_005852692.1 (protein rer1a [Nannochloropsis gaditana CCMP526]; EKU23140.1 protein rer1a [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 323.2 bits (827), Expect = 5.400e-85 Identity = 154/178 (86.52%), Postives = 164/178 (92.13%), Query Frame = 0
Query: 2 MESDGDPSFVEQVAVSLQRKWQHILDRSTVYVGLRWVIFVVMLGLYALRVFYINGWFIVTYGLGIYLLNNFIGFLSPQMDPESEGPLLPTNEREEYRPFARRLPEFKFWYQCAKATWVAFGMTFFDFFDVPVYWPILLLYFISLFVLTMKRQIRHMIKHRYVPWSNGKAKYAGGGEKR 180
ME+ G+ S VEQ VS QRKWQHILD+STV+VGLRWVIF ML LYA+RVFYINGWFIVTYGLGIYLLNNFIGFLSPQMDPESEGPLLPT E EEYRPFARRLPEFKFWYQCAKATW+AF MTFF+FFDVPVYWPILLLYF+SLF+LTMKRQIRHMIKHRYVPWSN KA+YAG GEKR
Sbjct: 1 MEAGGESSVVEQFVVSWQRKWQHILDQSTVHVGLRWVIFAAMLTLYAVRVFYINGWFIVTYGLGIYLLNNFIGFLSPQMDPESEGPLLPTQESEEYRPFARRLPEFKFWYQCAKATWIAFTMTFFEFFDVPVYWPILLLYFVSLFILTMKRQIRHMIKHRYVPWSNSKARYAGAGEKR 178
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G03030.1 ID=NO09G03030.1|Name=NO09G03030.1|organism=Nannochloropsis oceanica|type=mRNA|length=1400bp AGGTCAAAGTCATTTCCCCGTCGTTGTCGTCGTAGACCTTCAAGCCTACT TATAGGTTGCTCTGGGTGTCGTGCCCTGAAAAGTCTCCCTCCCAGAGAAG GGCTTCTCTCGCTCAAAAGCGTTGCTTCGTGAGCGGAACCCTTGCATCTC TGCACCACCTACCCACACGTAAGCCCCGCGCCGCGCGACAGACGCCTGTA CAATGATGGAATCGGATGGAGATCCAAGCTTTGTGGAGCAGGTGGCAGTG TCCCTGCAAAGAAAATGGCAACACATCCTGGATCGCTCCACCGTGTACGT CGGCCTTCGTTGGGTTATCTTTGTTGTCATGCTCGGCCTATACGCCTTAC GTGTATTCTACATTAATGGCTGGTTCATTGTGACCTACGGCTTGGGTATC TACCTCCTGAACAACTTTATCGGATTCCTTTCCCCGCAGATGGACCCAGA ATCAGAAGGTCCCTTACTACCAACGAATGAGAGGGAAGAATATCGACCGT TTGCCCGACGGTTGCCGGAATTTAAATTTTGGTACCAATGCGCGAAGGCG ACATGGGTGGCATTTGGAATGACGTTTTTTGATTTTTTTGACGTGCCGGT TTATTGGCCGATTCTCTTGTTGTACTTTATAAGTCTGTTTGTATTGACGA TGAAGAGACAGATTCGGCATATGATCAAACATCGGTACGTGCCGTGGAGT AACGGCAAGGCCAAGTATGCGGGAGGGGGAGAGAAGCGGATGGCAGCGAA GTAAGTGCGGATAGCGTGGGAGGTGGTGAGGCGTTAGACATAGAAAGAGA AAGGGAGACGATGGTGGACATGGCGCTGGAGGTTTGAGACTTACTCTCTC TTTCCCTCCTGAACATGTGTGTGTGTACGCGCGCGCGTGCGTGTATGTAC GATAGATTCAAAACCAGAAAAAATGTTTTGTTGGGCGTTATGGTTTGCTC CCTGGACAAATGAAACAGAAAGGGAAGCAGTCGATCCTCCCCTTTGCTCT GTTGGCTCCTTGACAACAGACAGCGGTAACACGTTCGCGAGAAGGATGAT AGAAAATCCGCCCATGCTTTGGACAAAAGAGCGACAGGTTAACCGACTCC AGGCGTTCAAAAGCCAACGGAAGGATGTTGAGAGAAATAAGGAAGGGAAA TGATGGAGGGAGAAGTCGAGGGAGCAGGGCCACAGACGGAAAAACAAGAA ACGTCTCGACGCTTCCCGGCGAGACGTTTCTGCGGCCGATGCCATGGGAG GGGGGGAGGGAGGGGGAAGGCCATTACCTAGGCCGTTCCCCTTCATCATC CTCCCCACGAAGGACCAACCACATGACAACACCATCGATACACGCAATAA GTCAACAAGCAAACATGGCTGCGACCGACAAACACCCGCACCTTGCATTA back to topprotein sequence of NO09G03030.1 >NO09G03030.1-protein ID=NO09G03030.1-protein|Name=NO09G03030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp MMESDGDPSFVEQVAVSLQRKWQHILDRSTVYVGLRWVIFVVMLGLYALR VFYINGWFIVTYGLGIYLLNNFIGFLSPQMDPESEGPLLPTNEREEYRPF ARRLPEFKFWYQCAKATWVAFGMTFFDFFDVPVYWPILLLYFISLFVLTM KRQIRHMIKHRYVPWSNGKAKYAGGGEKRMAAK* back to topmRNA from alignment at chr9:884589..886608- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G03030.1 ID=NO09G03030.1|Name=NO09G03030.1|organism=Nannochloropsis oceanica|type=mRNA|length=2020bp|location=Sequence derived from alignment at chr9:884589..886608- (Nannochloropsis oceanica) AGGTCAAAGTCATTTCCCCGTCGTTGTCGTCGTAGACCTTCAAGCCTACT
TATAGGTTGCTCTGGGTGTCGTGCCCTGAAAAGTCTCCCTCCCAGAGAAG
GGCTTCTCTCGCTCAAAAGCGTTGCTTCGTGAGCGGAACCCTTGCATCTC
TGCACCACCTACCCACACGTAAGCCCCGCGCCGCGCGACAGACGCCTGTA
CAATGATGGAATCGGATGGAGATCCAAGCTTTGTGGAGCAGGTGGCAGTG
TCCCTGCAAAGGTACGTGCTTTATTTACTCTAGGTCTTGTGTATGGGTGG
GTGGACTGCGTGGGTGGGTCATGTGGCGGGTGGTGTACGGGTGAATGTGT
GTCTGGTGCTTGAAAAGCCTCGCTGCTCATCATTGTCGCTATCTGGATAT
GGTGTAATGGCGTTAGGAAATGCGTGGGTGAGAAGATGCTCGATGGATTG
ATGGCATGTGTGAGAGGGAGAGTTACTAAGTCTCTTCCCGCTTTACCCAC
CATGCTCTCGGTGAAACGTTGTGCAATGCATGTTTACCTTTGAGATATGC
TCGTAAGAGTATGTGTGCATATTCCCGTGCGTTTGATGCGATGATTTCTC
TTGTCGGTAGATAGGGCTGTGCATCATTGACATCTTGACGGACGGAACCA
TCAACCATTGATCACCGGATGCGCTTTCACCACCCCATCACCAACCCACT
CTCGCCCTTCCAACCTATCTTCAGTCTAACAATGACCATACACAGTTTGA
AAATTTCTCCACACACCATGTCAGCCCTTGGATGATCCTCTTGGTGGTCG
TGCTCACTATGTTCACAGCGCCTTTCGCGAGTTCAAAAATTGCTTAACAA
AACCCCAATTTTTCCCCTCACGCGAACACAGAAAATGGCAACACATCCTG
GATCGCTCCACCGTGTACGTCGGCCTTCGTTGGGTTATCTTTGTTGTCAT
GCTCGGCCTATACGCCTTACGTGTATTCTACATTAATGGCTGGTTCATTG
TGACCTACGGCTTGGGTATCTACCTCCTGAACAACTTTATCGGATTCCTT
TCCCCGCAGATGGACCCAGAATCAGAAGGTCCCTTACTACCAACGAATGA
GAGGGAAGAATATCGACCGTTTGCCCGACGGTTGCCGGAATTTAAATTTT
GGTACCAATGCGCGAAGGCGACATGGGTGGCATTTGGAATGACGTTTTTT
GATTTTTTTGACGTGCCGGTTTATTGGCCGATTCTCTTGTTGTACTTTAT
AAGTCTGTTTGTATTGACGATGAAGAGACAGATTCGGCATATGATCAAAC
ATCGGTACGTGCCGTGGAGTAACGGCAAGGCCAAGTATGCGGGAGGGGGA
GAGAAGCGGATGGCAGCGAAGTAAGTGCGGATAGCGTGGGAGGTGGTGAG
GCGTTAGACATAGAAAGAGAAAGGGAGACGATGGTGGACATGGCGCTGGA
GGTTTGAGACTTACTCTCTCTTTCCCTCCTGAACATGTGTGTGTGTACGC
GCGCGCGTGCGTGTATGTACGATAGATTCAAAACCAGAAAAAATGTTTTG
TTGGGCGTTATGGTTTGCTCCCTGGACAAATGAAACAGAAAGGGAAGCAG
TCGATCCTCCCCTTTGCTCTGTTGGCTCCTTGACAACAGACAGCGGTAAC
ACGTTCGCGAGAAGGATGATAGAAAATCCGCCCATGCTTTGGACAAAAGA
GCGACAGGTTAACCGACTCCAGGCGTTCAAAAGCCAACGGAAGGATGTTG
AGAGAAATAAGGAAGGGAAATGATGGAGGGAGAAGTCGAGGGAGCAGGGC
CACAGACGGAAAAACAAGAAACGTCTCGACGCTTCCCGGCGAGACGTTTC
TGCGGCCGATGCCATGGGAGGGGGGGAGGGAGGGGGAAGGCCATTACCTA
GGCCGTTCCCCTTCATCATCCTCCCCACGAAGGACCAACCACATGACAAC
ACCATCGATACACGCAATAAGTCAACAAGCAAACATGGCTGCGACCGACA
AACACCCGCACCTTGCATTA back to topCoding sequence (CDS) from alignment at chr9:884589..886608- >NO09G03030.1 ID=NO09G03030.1|Name=NO09G03030.1|organism=Nannochloropsis oceanica|type=CDS|length=552bp|location=Sequence derived from alignment at chr9:884589..886608- (Nannochloropsis oceanica) ATGATGGAATCGGATGGAGATCCAAGCTTTGTGGAGCAGGTGGCAGTGTC CCTGCAAAGAAAATGGCAACACATCCTGGATCGCTCCACCGTGTACGTCG GCCTTCGTTGGGTTATCTTTGTTGTCATGCTCGGCCTATACGCCTTACGT GTATTCTACATTAATGGCTGGTTCATTGTGACCTACGGCTTGGGTATCTA CCTCCTGAACAACTTTATCGGATTCCTTTCCCCGCAGATGGACCCAGAAT CAGAAGGTCCCTTACTACCAACGAATGAGAGGGAAGAATATCGACCGTTT GCCCGACGGTTGCCGGAATTTAAATTTTGGTACCAATGCGCGAAGGCGAC ATGGGTGGCATTTGGAATGACGTTTTTTGATTTTTTTGACGTGCCGGTTT ATTGGCCGATTCTCTTGTTGTACTTTATAAGTCTGTTTGTATTGACGATG AAGAGACAGATTCGGCATATGATCAAACATCGGTACGTGCCGTGGAGTAA CGGCAAGGCCAAGTATGCGGGAGGGGGAGAGAAGCGGATGGCAGCGAAGT AA back to top
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