NO09G02980, NO09G02980 (gene) Nannochloropsis oceanica

Overview
NameNO09G02980
Unique NameNO09G02980
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1035
Alignment locationchr9:874541..875575 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:874541..875575 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010422Ccdc124/Lso1/Lso2
Homology
BLAST of NO09G02980 vs. NCBI_GenBank
Match: XP_008897220.1 (hypothetical protein PPTG_05428 [Phytophthora parasitica INRA-310] >ETN17685.1 hypothetical protein PPTG_05428 [Phytophthora parasitica INRA-310])

HSP 1 Score: 85.1 bits (209), Expect = 3.400e-13
Identity = 42/83 (50.60%), Postives = 58/83 (69.88%), Query Frame = 0
Query:  155 EANPNRRMTGVEVARNLDQAIDLLGSGGGAAGGDSHPEKRQKAAHKAFEERMLVELKESMPGMRMSQYKDRIFEMWKKSPENP 238
            +AN NR       AR+LD A+DLL  G      + HPE+R KAA+KAFEE ML ++KE  PG+++SQYK ++ EMW++SP+NP
Sbjct:  169 QANRNRNQDEPTEARSLDAALDLLSVGDKEL--EKHPERRAKAAYKAFEEVMLPQVKEDYPGLKLSQYKQKLSEMWRRSPDNP 249          
BLAST of NO09G02980 vs. NCBI_GenBank
Match: XP_312989.4 (AGAP004110-PA [Anopheles gambiae str. PEST] >EAA08560.4 AGAP004110-PA [Anopheles gambiae str. PEST])

HSP 1 Score: 84.7 bits (208), Expect = 4.400e-13
Identity = 45/85 (52.94%), Postives = 57/85 (67.06%), Query Frame = 0
Query:  153 PLEANPNRRMTGVEVARNLDQAIDLLGSGGGAAGGDSHPEKRQKAAHKAFEERMLVELKESMPGMRMSQYKDRIFEMWKKSPENP 238
            PLE N NR M   EVA+ +DQAI +L  G  +A  D HPEKR KAA+KA+EE  L  LK   P +++SQ K  IF+ W+K+PENP
Sbjct:  125 PLEENLNRVMADTEVAQTIDQAIAVLSVGDPSA--DRHPEKRMKAAYKAYEEEELKRLKLENPSLKLSQLKQMIFKNWQKAPENP 207          
BLAST of NO09G02980 vs. NCBI_GenBank
Match: AEE61388.1 (unknown [Dendroctonus ponderosae])

HSP 1 Score: 84.3 bits (207), Expect = 5.800e-13
Identity = 45/85 (52.94%), Postives = 56/85 (65.88%), Query Frame = 0
Query:  153 PLEANPNRRMTGVEVARNLDQAIDLLGSGGGAAGGDSHPEKRQKAAHKAFEERMLVELKESMPGMRMSQYKDRIFEMWKKSPENP 238
            PL+ N NR     E AR +D+AI++L  GG     D HPEKR KAA+ AFEE+ L ELK   P +R+SQ K  IF+ W+KSPENP
Sbjct:  121 PLQENLNRVQIDGEEARTIDEAIEIL--GGPTDDYDKHPEKRMKAAYNAFEEKRLKELKLEHPSLRLSQLKQMIFKEWQKSPENP 203          
BLAST of NO09G02980 vs. NCBI_GenBank
Match: POM75744.1 (Hypothetical protein PHPALM_7110 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 83.6 bits (205), Expect = 9.900e-13
Identity = 42/83 (50.60%), Postives = 58/83 (69.88%), Query Frame = 0
Query:  155 EANPNRRMTGVEVARNLDQAIDLLGSGGGAAGGDSHPEKRQKAAHKAFEERMLVELKESMPGMRMSQYKDRIFEMWKKSPENP 238
            +AN NR       AR+LD A+DLL  G      + HPE+R KAA+KAFEE ML ++KE  PG+++SQYK ++ EMW++SP+NP
Sbjct:  169 QANRNRDQDEPTEARSLDAALDLLSVGDKDL--EKHPERRAKAAYKAFEEVMLPQVKEDYPGLKLSQYKHKLSEMWRRSPDNP 249          
BLAST of NO09G02980 vs. NCBI_GenBank
Match: XP_022902021.1 (coiled-coil domain-containing protein 124-like [Onthophagus taurus])

HSP 1 Score: 83.2 bits (204), Expect = 1.300e-12
Identity = 45/86 (52.33%), Postives = 55/86 (63.95%), Query Frame = 0
Query:  153 PLEANPNRRMTGVEVARNLDQAIDLLGSGGGAAGG-DSHPEKRQKAAHKAFEERMLVELKESMPGMRMSQYKDRIFEMWKKSPENP 238
            PLE N NR M   E AR++ +AI +L     A    D HPEKR KAA+ A+EER L ELK   P +R+SQ K  IF+ W+KSPENP
Sbjct:  121 PLEENINRAMVEGEEARSVTEAISILSVNSAAQDKVDKHPEKRMKAAYTAYEERRLAELKAENPSLRLSQLKQMIFKEWQKSPENP 206          
BLAST of NO09G02980 vs. NCBI_GenBank
Match: CCA26492.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 82.8 bits (203), Expect = 1.700e-12
Identity = 40/81 (49.38%), Postives = 58/81 (71.60%), Query Frame = 0
Query:  157 NPNRRMTGVEVARNLDQAIDLLGSGGGAAGGDSHPEKRQKAAHKAFEERMLVELKESMPGMRMSQYKDRIFEMWKKSPENP 238
            N NR++   + AR++D A+D+L      A  D HPE+R KAA+KAFEE  L ELK+  PG+++SQYK ++ +MW+KSP+NP
Sbjct:  164 NLNRQVKVADEARSIDAALDVLSLSNEDA-ADRHPERRAKAAYKAFEEVTLPELKQDFPGLKLSQYKQKLSDMWRKSPQNP 243          
BLAST of NO09G02980 vs. NCBI_GenBank
Match: CCI48995.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 82.8 bits (203), Expect = 1.700e-12
Identity = 41/81 (50.62%), Postives = 58/81 (71.60%), Query Frame = 0
Query:  157 NPNRRMTGVEVARNLDQAIDLLGSGGGAAGGDSHPEKRQKAAHKAFEERMLVELKESMPGMRMSQYKDRIFEMWKKSPENP 238
            NPNR+   V+ AR++D A+D+L      A  D HPE+R KAA+KAFEE  L ELK   PG+++SQYK ++ ++W+KSP+NP
Sbjct:  164 NPNRQPKTVDEARSIDAALDVLSISKNDA-IDRHPERRAKAAYKAFEEVTLPELKLEFPGLKLSQYKQKLSDLWRKSPQNP 243          
BLAST of NO09G02980 vs. NCBI_GenBank
Match: CCI48998.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 82.8 bits (203), Expect = 1.700e-12
Identity = 41/81 (50.62%), Postives = 58/81 (71.60%), Query Frame = 0
Query:  157 NPNRRMTGVEVARNLDQAIDLLGSGGGAAGGDSHPEKRQKAAHKAFEERMLVELKESMPGMRMSQYKDRIFEMWKKSPENP 238
            NPNR+   V+ AR++D A+D+L      A  D HPE+R KAA+KAFEE  L ELK   PG+++SQYK ++ ++W+KSP+NP
Sbjct:  164 NPNRQPKTVDEARSIDAALDVLSISKNDA-IDRHPERRAKAAYKAFEEVTLPELKLEFPGLKLSQYKQKLSDLWRKSPQNP 243          
BLAST of NO09G02980 vs. NCBI_GenBank
Match: GAQ86290.1 (hypothetical protein KFL_002800200 [Klebsormidium nitens])

HSP 1 Score: 82.8 bits (203), Expect = 1.700e-12
Identity = 42/83 (50.60%), Postives = 58/83 (69.88%), Query Frame = 0
Query:  155 EANPNRRMTGVEVARNLDQAIDLLGSGGGAAGGDSHPEKRQKAAHKAFEERMLVELKESMPGMRMSQYKDRIFEMWKKSPENP 238
            E N N+  T V+ ARN+D+A+  L  GG +   D HPEKR KAA+KAFEE  L +L+   PG+  SQYK+ ++++WKKSP+NP
Sbjct:  139 EPNLNKIETVVD-ARNIDEALQQLDLGGPSGTPDKHPEKRLKAAYKAFEEAELPQLRAEKPGLTQSQYKEALWKLWKKSPDNP 220          
BLAST of NO09G02980 vs. NCBI_GenBank
Match: GAY05092.1 (Hypothetical protein PINS_012907 [Pythium insidiosum])

HSP 1 Score: 82.8 bits (203), Expect = 1.700e-12
Identity = 44/88 (50.00%), Postives = 57/88 (64.77%), Query Frame = 0
Query:  157 NPNRRMTGVEVARNLDQAIDLLGSGGGAAGGDSHPEKRQKAAHKAFEERMLVELKESMPGMRMSQYKDRIFEMWKKSPENPAVAARAA 245
            N NR       AR+LD A+D+L         + HPE R KAA+KAFEE M+ ++KE  PG+++SQYK RIF++WKKSPENP   A  A
Sbjct:  171 NRNRAADVDGEARSLDAALDVLSMDDKDL--EKHPEXRAKAAYKAFEEAMMPQMKEDYPGLKLSQYKQRIFDLWKKSPENPLNQASLA 256          
The following BLAST results are available for this feature:
BLAST of NO09G02980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_008897220.13.400e-1350.60hypothetical protein PPTG_05428 [Phytophthora para... [more]
XP_312989.44.400e-1352.94AGAP004110-PA [Anopheles gambiae str. PEST] >EAA08... [more]
AEE61388.15.800e-1352.94unknown [Dendroctonus ponderosae][more]
POM75744.19.900e-1350.60Hypothetical protein PHPALM_7110 [Phytophthora pal... [more]
XP_022902021.11.300e-1252.33coiled-coil domain-containing protein 124-like [On... [more]
CCA26492.11.700e-1249.38conserved hypothetical protein [Albugo laibachii N... [more]
CCI48995.11.700e-1250.62unnamed protein product [Albugo candida][more]
CCI48998.11.700e-1250.62unnamed protein product [Albugo candida][more]
GAQ86290.11.700e-1250.60hypothetical protein KFL_002800200 [Klebsormidium ... [more]
GAY05092.11.700e-1250.00Hypothetical protein PINS_012907 [Pythium insidios... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010832NSK010832Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G02980.1NO09G02980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588502gene_4249Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100099g4gene3055Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G02980.1NO09G02980.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G02980 ID=NO09G02980|Name=NO09G02980|organism=Nannochloropsis oceanica|type=gene|length=1035bp
ATAGGCCTTTAGGCACGCCGCAGCCCACAGCATAACGACCTCGTCGGCCA
GCTATGCCTCCTAAGAGCGTGCATACTAAAAAGGCAGCAGCCTTGGAGAA
GAAGGCAGCCAGTGCAAGTGAAAAAGCCGCAGTCAAGCAGGCCCAAATGG
AGGCGCAAGAAGCTTCGGCATGGAATGAAGGCGCCGACCTTAAAAGTGCC
AAGCGGCGAGAAGAGCAAGAAAAGAAGGCACAGGAAAGAGACGCGAAGAG
GGCAGAGAAAGCGGCATTGGAAAATGAAGAAGCTGCGCTGGCAGCCTCCA
TCAAAGCCAAGCCAAAGAAGGTTCCGAATGGGAAACAAGCCGCCAAGAAC
AATGAATTGAAGGAGTTGGAAGCTCAATTGAGGGCGATGGAAATGGAGAA
AAAGAAGAAGGAGGAGAAGAAGAAGACGGCTAGTGGTGGGGGTAAGAAGG
GCAAGAAGTGTAAGGCGGGGTCATCGGAGGACGAGTCGTCCGAAGACGAG
GGGCTCCCACCGCTCGAAGCGAACCCCAACAGAAGAATGACGGGAGTCGA
GGTTGCGCGGAATCTGGACCAAGCAATTGACTTGCTGGGCAGTGGTGGTG
GGGCTGCGGGAGGGGACTCTCATCCTGAGAAACGACAGAAAGCTGCGCAC
AAGGCATTCGAGGAGAGGATGCTGGTGGAGCTGAAGGAGTCTATGCCGGG
CATGCGCATGTCGCAATACAAGGACCGAATCTTTGAGATGTGGAAAAAGA
GCCCCGAGAATCCTGCGGTGGCCGCACGGGCGGCGGCTTTGGATCTAGGA
GGTGGCAAAAAGGGTTGAGGATGTGGTGGTTTGACATGCGGTGAAGGAGA
AAGGTCAAATGGCTATCAATCGTTGGTGCTGTGCACCATAGCATTACAAT
GAAACGGAGCTCAGAGAATGTACACGCAAGCCAAAGAAGCCGTAAGTAGG
AAAACACAACAGCGTCAATGGAAATTATAAGACATGCATTCATGGAAATT
ATATAGGATATGAAAAACGATAGAAGGGGAGCGCG
back to top

protein sequence of NO09G02980.1

>NO09G02980.1-protein ID=NO09G02980.1-protein|Name=NO09G02980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MPPKSVHTKKAAALEKKAASASEKAAVKQAQMEAQEASAWNEGADLKSAK
RREEQEKKAQERDAKRAEKAALENEEAALAASIKAKPKKVPNGKQAAKNN
ELKELEAQLRAMEMEKKKKEEKKKTASGGGKKGKKCKAGSSEDESSEDEG
LPPLEANPNRRMTGVEVARNLDQAIDLLGSGGGAAGGDSHPEKRQKAAHK
AFEERMLVELKESMPGMRMSQYKDRIFEMWKKSPENPAVAARAAALDLGG
GKKG*
back to top
Synonyms
Publications