NO09G02980.1, NO09G02980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02980.1
Unique NameNO09G02980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1035
Alignment locationchr9:874541..875575 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:874541..875575 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G02980.1 vs.
Match: EWM27496.1 (Protein of unknown function DUF1014 [Nannochloropsis gaditana])

HSP 1 Score: 301.6 bits (771), Expect = 2.300e-78
Identity = 183/256 (71.48%), Postives = 211/256 (82.42%), Query Frame = 0
Query:    1 MPPKSVHTKKAAALEKKAASASEKAAVKQAQMEAQEASAWNEGADLKSAKRREEQEKKAQERDAKRAEKAALENEEAALAASIKAKPKKVPNGKQAAKNNELKELEAQLRAMEMEKKKKEEKKKTA-SGGGKKGKKCKA-GSSEDESSEDEGLPPLEANPNRRMTGVEVARNLDQAIDLLGSG-GGAAGGDSHPEKRQKAAHKAFEERMLVELKESMPGMRMSQYKDRIFEMWKKSPENPAVAAR-AAALDLGGGK 253
            MPPK VH KKAAA+EKKAA+ S KA++K A +EAQEA+ W +GADL++AKR+EE+E+KAQ RDAK+AE  ALE +E A+AAS+K KPKKV N KQAAK+NELKELEAQL+AME+EKKKKEEKKK A +  GKKGKK       +DE S+DE LPPLEAN NR+M  VEVAR LDQAIDL+GS  GG  G D+HPEKRQKAA+KAFEERML ELKE MPGMR+SQYKDRIFEMWKKSPENP VAAR AA +D G GK
Sbjct:    1 MPPKGVHAKKAAAMEKKAANESVKASLKAAALEAQEAAGWCDGADLRTAKRKEEEERKAQARDAKKAELKALEEQENAMAASVKIKPKKVVNSKQAAKSNELKELEAQLKAMELEKKKKEEKKKAAIADAGKKGKKSSGKKGGKDELSDDESLPPLEANVNRQMANVEVARGLDQAIDLMGSSRGGTGGDDAHPEKRQKAAYKAFEERMLAELKEEMPGMRLSQYKDRIFEMWKKSPENPMVAARVAAGMDAGVGK 256          
The following BLAST results are available for this feature:
BLAST of NO09G02980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27496.12.300e-7871.48Protein of unknown function DUF1014 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02980NO09G02980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02980.1NO09G02980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02980.1.cds1NO09G02980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02980.1 ID=NO09G02980.1|Name=NO09G02980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1035bp
ATAGGCCTTTAGGCACGCCGCAGCCCACAGCATAACGACCTCGTCGGCCA
GCTATGCCTCCTAAGAGCGTGCATACTAAAAAGGCAGCAGCCTTGGAGAA
GAAGGCAGCCAGTGCAAGTGAAAAAGCCGCAGTCAAGCAGGCCCAAATGG
AGGCGCAAGAAGCTTCGGCATGGAATGAAGGCGCCGACCTTAAAAGTGCC
AAGCGGCGAGAAGAGCAAGAAAAGAAGGCACAGGAAAGAGACGCGAAGAG
GGCAGAGAAAGCGGCATTGGAAAATGAAGAAGCTGCGCTGGCAGCCTCCA
TCAAAGCCAAGCCAAAGAAGGTTCCGAATGGGAAACAAGCCGCCAAGAAC
AATGAATTGAAGGAGTTGGAAGCTCAATTGAGGGCGATGGAAATGGAGAA
AAAGAAGAAGGAGGAGAAGAAGAAGACGGCTAGTGGTGGGGGTAAGAAGG
GCAAGAAGTGTAAGGCGGGGTCATCGGAGGACGAGTCGTCCGAAGACGAG
GGGCTCCCACCGCTCGAAGCGAACCCCAACAGAAGAATGACGGGAGTCGA
GGTTGCGCGGAATCTGGACCAAGCAATTGACTTGCTGGGCAGTGGTGGTG
GGGCTGCGGGAGGGGACTCTCATCCTGAGAAACGACAGAAAGCTGCGCAC
AAGGCATTCGAGGAGAGGATGCTGGTGGAGCTGAAGGAGTCTATGCCGGG
CATGCGCATGTCGCAATACAAGGACCGAATCTTTGAGATGTGGAAAAAGA
GCCCCGAGAATCCTGCGGTGGCCGCACGGGCGGCGGCTTTGGATCTAGGA
GGTGGCAAAAAGGGTTGAGGATGTGGTGGTTTGACATGCGGTGAAGGAGA
AAGGTCAAATGGCTATCAATCGTTGGTGCTGTGCACCATAGCATTACAAT
GAAACGGAGCTCAGAGAATGTACACGCAAGCCAAAGAAGCCGTAAGTAGG
AAAACACAACAGCGTCAATGGAAATTATAAGACATGCATTCATGGAAATT
ATATAGGATATGAAAAACGATAGAAGGGGAGCGCG
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protein sequence of NO09G02980.1

>NO09G02980.1-protein ID=NO09G02980.1-protein|Name=NO09G02980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MPPKSVHTKKAAALEKKAASASEKAAVKQAQMEAQEASAWNEGADLKSAK
RREEQEKKAQERDAKRAEKAALENEEAALAASIKAKPKKVPNGKQAAKNN
ELKELEAQLRAMEMEKKKKEEKKKTASGGGKKGKKCKAGSSEDESSEDEG
LPPLEANPNRRMTGVEVARNLDQAIDLLGSGGGAAGGDSHPEKRQKAAHK
AFEERMLVELKESMPGMRMSQYKDRIFEMWKKSPENPAVAARAAALDLGG
GKKG*
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mRNA from alignment at chr9:874541..875575-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02980.1 ID=NO09G02980.1|Name=NO09G02980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1035bp|location=Sequence derived from alignment at chr9:874541..875575- (Nannochloropsis oceanica)
ATAGGCCTTTAGGCACGCCGCAGCCCACAGCATAACGACCTCGTCGGCCA GCTATGCCTCCTAAGAGCGTGCATACTAAAAAGGCAGCAGCCTTGGAGAA GAAGGCAGCCAGTGCAAGTGAAAAAGCCGCAGTCAAGCAGGCCCAAATGG AGGCGCAAGAAGCTTCGGCATGGAATGAAGGCGCCGACCTTAAAAGTGCC AAGCGGCGAGAAGAGCAAGAAAAGAAGGCACAGGAAAGAGACGCGAAGAG GGCAGAGAAAGCGGCATTGGAAAATGAAGAAGCTGCGCTGGCAGCCTCCA TCAAAGCCAAGCCAAAGAAGGTTCCGAATGGGAAACAAGCCGCCAAGAAC AATGAATTGAAGGAGTTGGAAGCTCAATTGAGGGCGATGGAAATGGAGAA AAAGAAGAAGGAGGAGAAGAAGAAGACGGCTAGTGGTGGGGGTAAGAAGG GCAAGAAGTGTAAGGCGGGGTCATCGGAGGACGAGTCGTCCGAAGACGAG GGGCTCCCACCGCTCGAAGCGAACCCCAACAGAAGAATGACGGGAGTCGA GGTTGCGCGGAATCTGGACCAAGCAATTGACTTGCTGGGCAGTGGTGGTG GGGCTGCGGGAGGGGACTCTCATCCTGAGAAACGACAGAAAGCTGCGCAC AAGGCATTCGAGGAGAGGATGCTGGTGGAGCTGAAGGAGTCTATGCCGGG CATGCGCATGTCGCAATACAAGGACCGAATCTTTGAGATGTGGAAAAAGA GCCCCGAGAATCCTGCGGTGGCCGCACGGGCGGCGGCTTTGGATCTAGGA GGTGGCAAAAAGGGTTGAGGATGTGGTGGTTTGACATGCGGTGAAGGAGA AAGGTCAAATGGCTATCAATCGTTGGTGCTGTGCACCATAGCATTACAAT GAAACGGAGCTCAGAGAATGTACACGCAAGCCAAAGAAGCCGTAAGTAGG AAAACACAACAGCGTCAATGGAAATTATAAGACATGCATTCATGGAAATT ATATAGGATATGAAAAACGATAGAAGGGGAGCGCG
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Coding sequence (CDS) from alignment at chr9:874541..875575-

>NO09G02980.1 ID=NO09G02980.1|Name=NO09G02980.1|organism=Nannochloropsis oceanica|type=CDS|length=765bp|location=Sequence derived from alignment at chr9:874541..875575- (Nannochloropsis oceanica)
ATGCCTCCTAAGAGCGTGCATACTAAAAAGGCAGCAGCCTTGGAGAAGAA
GGCAGCCAGTGCAAGTGAAAAAGCCGCAGTCAAGCAGGCCCAAATGGAGG
CGCAAGAAGCTTCGGCATGGAATGAAGGCGCCGACCTTAAAAGTGCCAAG
CGGCGAGAAGAGCAAGAAAAGAAGGCACAGGAAAGAGACGCGAAGAGGGC
AGAGAAAGCGGCATTGGAAAATGAAGAAGCTGCGCTGGCAGCCTCCATCA
AAGCCAAGCCAAAGAAGGTTCCGAATGGGAAACAAGCCGCCAAGAACAAT
GAATTGAAGGAGTTGGAAGCTCAATTGAGGGCGATGGAAATGGAGAAAAA
GAAGAAGGAGGAGAAGAAGAAGACGGCTAGTGGTGGGGGTAAGAAGGGCA
AGAAGTGTAAGGCGGGGTCATCGGAGGACGAGTCGTCCGAAGACGAGGGG
CTCCCACCGCTCGAAGCGAACCCCAACAGAAGAATGACGGGAGTCGAGGT
TGCGCGGAATCTGGACCAAGCAATTGACTTGCTGGGCAGTGGTGGTGGGG
CTGCGGGAGGGGACTCTCATCCTGAGAAACGACAGAAAGCTGCGCACAAG
GCATTCGAGGAGAGGATGCTGGTGGAGCTGAAGGAGTCTATGCCGGGCAT
GCGCATGTCGCAATACAAGGACCGAATCTTTGAGATGTGGAAAAAGAGCC
CCGAGAATCCTGCGGTGGCCGCACGGGCGGCGGCTTTGGATCTAGGAGGT
GGCAAAAAGGGTTGA
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Synonyms
Publications