NO09G02980, NO09G02980 (gene) Nannochloropsis oceanica

Overview
NameNO09G02980
Unique NameNO09G02980
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1035
Alignment locationchr9:874541..875575 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:874541..875575 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010422Ccdc124/Lso1/Lso2
Homology
BLAST of NO09G02980 vs. NCBI_GenBank
Match: EWM27496.1 (Protein of unknown function DUF1014 [Nannochloropsis gaditana])

HSP 1 Score: 186.4 bits (472), Expect = 1.100e-43
Identity = 138/174 (79.31%), Postives = 148/174 (85.06%), Query Frame = 0
Query:   83 IKAKPKKVPNGKQAAKNNELKELEAQLRAMEME--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLPPLEANPNRRMTGVEVARNLDQAIDLLGSG-GGAAGGDSHPEKRQKAAHKAFEERMLVELKESMPGMRMSQYKDRIFEMWKKSPENPAVAAR-AAALDLGGGK 253
            +K KPKKV N KQAAK+NELKELEAQL+AME+E  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     LPPLEAN NR+M  VEVAR LDQAIDL+GS  GG  G D+HPEKRQKAA+KAFEERML ELKE MPGMR+SQYKDRIFEMWKKSPENP VAAR AA +D G GK
Sbjct:   83 VKIKPKKVVNSKQAAKSNELKELEAQLKAMELEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDESLPPLEANVNRQMANVEVARGLDQAIDLMGSSRGGTGGDDAHPEKRQKAAYKAFEERMLAELKEEMPGMRLSQYKDRIFEMWKKSPENPMVAARVAAGMDAGVGK 256          
BLAST of NO09G02980 vs. NCBI_GenBank
Match: ETN58521.1 (coiled-coil domain-containing protein 124 [Anopheles darlingi])

HSP 1 Score: 92.4 bits (228), Expect = 2.100e-15
Identity = 47/85 (55.29%), Postives = 59/85 (69.41%), Query Frame = 0
Query:  153 PLEANPNRRMTGVEVARNLDQAIDLLGSGGGAAGGDSHPEKRQKAAHKAFEERMLVELKESMPGMRMSQYKDRIFEMWKKSPENP 238
            PLE N NR M   EVA+ +DQAI +L S  G  G D HPEKR KAA+KA+EE  LV LK+  P +++SQ K  IF+ W+K+PENP
Sbjct:  125 PLEENLNRVMADTEVAQTIDQAIAVL-SVSGEGGADRHPEKRMKAAYKAYEEEQLVRLKQEYPSLKLSQLKQMIFKNWQKAPENP 208          
BLAST of NO09G02980 vs. NCBI_GenBank
Match: KFB44674.1 (coiled-coil domain-containing protein 124 [Anopheles sinensis])

HSP 1 Score: 91.3 bits (225), Expect = 4.700e-15
Identity = 49/91 (53.85%), Postives = 60/91 (65.93%), Query Frame = 0
Query:  153 PLEANPNRRMTGVEVARNLDQAIDLLGSGGGAAGGDSHPEKRQKAAHKAFEERMLVELKESMPGMRMSQYKDRIFEMWKKSPENPAVAARA 244
            PLE N NR M   EVA+ +DQAI +L  G  A   D HPEKR KAA+KA+EE  LV LK+  P +++SQ K  IF+ W+KSPENP    RA
Sbjct:  124 PLEENLNRVMADTEVAQTIDQAIAVLSVGDSAV--DRHPEKRMKAAYKAYEEAELVRLKQENPSLKLSQLKQMIFKNWQKSPENPMNQIRA 212          
BLAST of NO09G02980 vs. NCBI_GenBank
Match: XP_001846565.1 (coiled-coil domain-containing protein 124 [Culex quinquefasciatus] >EDS43941.1 coiled-coil domain-containing protein 124 [Culex quinquefasciatus])

HSP 1 Score: 89.0 bits (219), Expect = 2.400e-14
Identity = 47/91 (51.65%), Postives = 60/91 (65.93%), Query Frame = 0
Query:  153 PLEANPNRRMTGVEVARNLDQAIDLLGSGGGAAGGDSHPEKRQKAAHKAFEERMLVELKESMPGMRMSQYKDRIFEMWKKSPENPAVAARA 244
            PLE N NR M   EVA+ +DQA+ +L    G  G D HPEKR KAA+KAFEE  L  LK+  P +++SQ K  IF+ W+KSP+NP   A+A
Sbjct:  123 PLEENLNRVMADTEVAQTIDQALAVLAVKDG--GDDKHPEKRMKAAYKAFEEEQLAILKQEHPSLKLSQLKQMIFKDWQKSPQNPLNQAKA 211          
BLAST of NO09G02980 vs. NCBI_GenBank
Match: XP_018332290.1 (PREDICTED: coiled-coil domain-containing protein 124 [Agrilus planipennis] >XP_018332291.1 PREDICTED: coiled-coil domain-containing protein 124 [Agrilus planipennis] >XP_018332292.1 PREDICTED: coiled-coil domain-containing protein 124 [Agrilus planipennis])

HSP 1 Score: 86.7 bits (213), Expect = 1.200e-13
Identity = 46/85 (54.12%), Postives = 56/85 (65.88%), Query Frame = 0
Query:  153 PLEANPNRRMTGVEVARNLDQAIDLLGSGGGAAGGDSHPEKRQKAAHKAFEERMLVELKESMPGMRMSQYKDRIFEMWKKSPENP 238
            PLE N NR     E AR +D+AI +L   GG    D HPEKR KAA+ AFEER L ELK+  P +R+SQ K  +F+ W+KSPENP
Sbjct:  123 PLEENINRLTIDGEEARTIDEAIKVL---GGKDDADKHPEKRMKAAYNAFEERRLKELKDENPTLRLSQLKQLVFKEWQKSPENP 204          
BLAST of NO09G02980 vs. NCBI_GenBank
Match: XP_002773843.1 (conserved hypothetical protein [Perkinsus marinus ATCC 50983] >EER05659.1 conserved hypothetical protein [Perkinsus marinus ATCC 50983])

HSP 1 Score: 86.3 bits (212), Expect = 1.500e-13
Identity = 47/93 (50.54%), Postives = 61/93 (65.59%), Query Frame = 0
Query:  153 PLEANPNRRM-----TGVEV--ARNLDQAIDLLGSGGGAAGG-DSHPEKRQKAAHKAFEERMLVELKESMPGMRMSQYKDRIFEMWKKSPENP 238
            PL+ N N  +      GVE+     +D+A+  LG    A  G D HPEKR KA + AFEERM+VE+KE  PG++ SQYKD+IF+ W+KSPENP
Sbjct:  133 PLQENINHLLRAQAERGVEIVSGTGIDKALGALGGDATATDGQDRHPEKRAKALYAAFEERMMVEMKEEYPGLKRSQYKDKIFKEWQKSPENP 225          
BLAST of NO09G02980 vs. NCBI_GenBank
Match: XP_024585507.1 (Uncharacterized conserved protein [Plasmopara halstedii] >CEG49138.1 Uncharacterized conserved protein [Plasmopara halstedii])

HSP 1 Score: 85.5 bits (210), Expect = 2.600e-13
Identity = 42/83 (50.60%), Postives = 59/83 (71.08%), Query Frame = 0
Query:  155 EANPNRRMTGVEVARNLDQAIDLLGSGGGAAGGDSHPEKRQKAAHKAFEERMLVELKESMPGMRMSQYKDRIFEMWKKSPENP 238
            +AN NR +     AR+LD A++LL  G      + HPE+R KAA+KAFEE ML ++KE  PG+++SQYK ++ EMW++SPENP
Sbjct:  168 QANRNRELDESTEARSLDAALELLSVGDKEI--EKHPERRAKAAYKAFEEVMLPQIKEDYPGLKLSQYKHKLSEMWRRSPENP 248          
BLAST of NO09G02980 vs. NCBI_GenBank
Match: XP_019754859.1 (PREDICTED: coiled-coil domain-containing protein 124 [Dendroctonus ponderosae])

HSP 1 Score: 85.5 bits (210), Expect = 2.600e-13
Identity = 46/85 (54.12%), Postives = 56/85 (65.88%), Query Frame = 0
Query:  153 PLEANPNRRMTGVEVARNLDQAIDLLGSGGGAAGGDSHPEKRQKAAHKAFEERMLVELKESMPGMRMSQYKDRIFEMWKKSPENP 238
            PL+ N NR     E AR +D+AI++L  GG     D HPEKR KAA+ AFEER L ELK   P +R+SQ K  IF+ W+KSPENP
Sbjct:  121 PLQENLNRVQIDGEEARTIDEAIEIL--GGPTDDYDKHPEKRMKAAYNAFEERRLKELKLEHPSLRLSQLKQMIFKEWQKSPENP 203          
BLAST of NO09G02980 vs. NCBI_GenBank
Match: PAA70597.1 (hypothetical protein BOX15_Mlig005652g2, partial [Macrostomum lignano] >PAA71017.1 hypothetical protein BOX15_Mlig005652g1, partial [Macrostomum lignano] >PAA72432.1 hypothetical protein BOX15_Mlig004796g1, partial [Macrostomum lignano])

HSP 1 Score: 85.5 bits (210), Expect = 2.600e-13
Identity = 43/86 (50.00%), Postives = 56/86 (65.12%), Query Frame = 0
Query:  152 PPLEANPNRRMTGVEVARNLDQAIDLLGSGGGAAGGDSHPEKRQKAAHKAFEERMLVELKESMPGMRMSQYKDRIFEMWKKSPENP 238
            P LE N NR     E AR +++A+ +L   GG AG D HPE+R +AA+ A+EER L  LK  +PGMR+SQ K  + + W KSPENP
Sbjct:  124 PELEENVNRLAIDGEQARTVEEALQVL---GGEAGSDRHPERRMRAAYAAYEERELARLKRELPGMRLSQLKQLVHKSWDKSPENP 206          
BLAST of NO09G02980 vs. NCBI_GenBank
Match: ETI34068.1 (hypothetical protein F443_19335 [Phytophthora parasitica P1569] >ETK74448.1 hypothetical protein L915_18760 [Phytophthora parasitica] >ETL27863.1 hypothetical protein L916_18660 [Phytophthora parasitica] >ETL81113.1 hypothetical protein L917_18482 [Phytophthora parasitica] >ETM34301.1 hypothetical protein L914_18576 [Phytophthora parasitica] >ETO62876.1 hypothetical protein F444_19284 [Phytophthora parasitica P1976] >ETP03972.1 hypothetical protein F441_19157 [Phytophthora parasitica CJ01A1] >ETP32125.1 hypothetical protein F442_19107 [Phytophthora parasitica P10297] >KUF87723.1 Coiled-coil domain-containing protein [Phytophthora nicotianae] >KUF94347.1 hypothetical protein AM588_10004592 [Phytophthora nicotianae])

HSP 1 Score: 85.1 bits (209), Expect = 3.400e-13
Identity = 42/83 (50.60%), Postives = 58/83 (69.88%), Query Frame = 0
Query:  155 EANPNRRMTGVEVARNLDQAIDLLGSGGGAAGGDSHPEKRQKAAHKAFEERMLVELKESMPGMRMSQYKDRIFEMWKKSPENP 238
            +AN NR       AR+LD A+DLL  G      + HPE+R KAA+KAFEE ML ++KE  PG+++SQYK ++ EMW++SP+NP
Sbjct:  169 QANRNRNQDEPTEARSLDAALDLLSVGDKEL--EKHPERRAKAAYKAFEEVMLPQVKEDYPGLKLSQYKQKLSEMWRRSPDNP 249          
The following BLAST results are available for this feature:
BLAST of NO09G02980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27496.11.100e-4379.31Protein of unknown function DUF1014 [Nannochlorops... [more]
ETN58521.12.100e-1555.29coiled-coil domain-containing protein 124 [Anophel... [more]
KFB44674.14.700e-1553.85coiled-coil domain-containing protein 124 [Anophel... [more]
XP_001846565.12.400e-1451.65coiled-coil domain-containing protein 124 [Culex q... [more]
XP_018332290.11.200e-1354.12PREDICTED: coiled-coil domain-containing protein 1... [more]
XP_002773843.11.500e-1350.54conserved hypothetical protein [Perkinsus marinus ... [more]
XP_024585507.12.600e-1350.60Uncharacterized conserved protein [Plasmopara hals... [more]
XP_019754859.12.600e-1354.12PREDICTED: coiled-coil domain-containing protein 1... [more]
PAA70597.12.600e-1350.00hypothetical protein BOX15_Mlig005652g2, partial [... [more]
ETI34068.13.400e-1350.60hypothetical protein F443_19335 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010832NSK010832Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G02980.1NO09G02980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588502gene_4249Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100099g4gene3055Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G02980.1NO09G02980.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G02980 ID=NO09G02980|Name=NO09G02980|organism=Nannochloropsis oceanica|type=gene|length=1035bp
ATAGGCCTTTAGGCACGCCGCAGCCCACAGCATAACGACCTCGTCGGCCA
GCTATGCCTCCTAAGAGCGTGCATACTAAAAAGGCAGCAGCCTTGGAGAA
GAAGGCAGCCAGTGCAAGTGAAAAAGCCGCAGTCAAGCAGGCCCAAATGG
AGGCGCAAGAAGCTTCGGCATGGAATGAAGGCGCCGACCTTAAAAGTGCC
AAGCGGCGAGAAGAGCAAGAAAAGAAGGCACAGGAAAGAGACGCGAAGAG
GGCAGAGAAAGCGGCATTGGAAAATGAAGAAGCTGCGCTGGCAGCCTCCA
TCAAAGCCAAGCCAAAGAAGGTTCCGAATGGGAAACAAGCCGCCAAGAAC
AATGAATTGAAGGAGTTGGAAGCTCAATTGAGGGCGATGGAAATGGAGAA
AAAGAAGAAGGAGGAGAAGAAGAAGACGGCTAGTGGTGGGGGTAAGAAGG
GCAAGAAGTGTAAGGCGGGGTCATCGGAGGACGAGTCGTCCGAAGACGAG
GGGCTCCCACCGCTCGAAGCGAACCCCAACAGAAGAATGACGGGAGTCGA
GGTTGCGCGGAATCTGGACCAAGCAATTGACTTGCTGGGCAGTGGTGGTG
GGGCTGCGGGAGGGGACTCTCATCCTGAGAAACGACAGAAAGCTGCGCAC
AAGGCATTCGAGGAGAGGATGCTGGTGGAGCTGAAGGAGTCTATGCCGGG
CATGCGCATGTCGCAATACAAGGACCGAATCTTTGAGATGTGGAAAAAGA
GCCCCGAGAATCCTGCGGTGGCCGCACGGGCGGCGGCTTTGGATCTAGGA
GGTGGCAAAAAGGGTTGAGGATGTGGTGGTTTGACATGCGGTGAAGGAGA
AAGGTCAAATGGCTATCAATCGTTGGTGCTGTGCACCATAGCATTACAAT
GAAACGGAGCTCAGAGAATGTACACGCAAGCCAAAGAAGCCGTAAGTAGG
AAAACACAACAGCGTCAATGGAAATTATAAGACATGCATTCATGGAAATT
ATATAGGATATGAAAAACGATAGAAGGGGAGCGCG
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protein sequence of NO09G02980.1

>NO09G02980.1-protein ID=NO09G02980.1-protein|Name=NO09G02980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MPPKSVHTKKAAALEKKAASASEKAAVKQAQMEAQEASAWNEGADLKSAK
RREEQEKKAQERDAKRAEKAALENEEAALAASIKAKPKKVPNGKQAAKNN
ELKELEAQLRAMEMEKKKKEEKKKTASGGGKKGKKCKAGSSEDESSEDEG
LPPLEANPNRRMTGVEVARNLDQAIDLLGSGGGAAGGDSHPEKRQKAAHK
AFEERMLVELKESMPGMRMSQYKDRIFEMWKKSPENPAVAARAAALDLGG
GKKG*
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Synonyms
Publications