NO09G02920, NO09G02920 (gene) Nannochloropsis oceanica

Overview
NameNO09G02920
Unique NameNO09G02920
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2181
Alignment locationchr9:857561..859741 +

Link to JBrowse

Properties
Property NameValue
DescriptionEukaryotic translation initiation factor 3 subunit E
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:857561..859741 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003743translation initiation factor activity
GO:0008135translation factor activity, RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005852eukaryotic translation initiation factor 3 complex
GO:0005737cytoplasm
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR036390WH_DNA-bd_sf
IPR016650eIF3e
IPR019010eIF3e_N
IPR000717PCI_dom
Homology
BLAST of NO09G02920 vs. NCBI_GenBank
Match: XP_005715226.1 (Translation initiation factor eIF3, subunit E [Chondrus crispus] >CDF35407.1 Translation initiation factor eIF3, subunit E [Chondrus crispus])

HSP 1 Score: 245.0 bits (624), Expect = 5.700e-61
Identity = 171/509 (33.60%), Postives = 250/509 (49.12%), Query Frame = 0
Query:    3 EYDLTHKIAPFADVHFLVQPDGPFDFLVGQ---AAYFQIPDVMRAKVALLQKTKNTDGEVRALEELEEYPSP-ELEARS-------KALDDEEEVLREAAGDALDMFSIDDMTKI-KEYVTAGATDPPERLECKEKLLAALPAYYDYAKFKYERGEYDDASIFLNNYIQAIGDRAAFSTVRYSNALWGRLGSAILTQQW-------HLVKEAVDAIDKHIMTVKRREDGVPPTKPTAADPDPIRSMSDREKLQLRTWLLHWCLFAYPATPEEARKREDAGDKWENILELIFPANDDKQGPGNGPDRYRQALQNNAPWLLRYMTTMVILHKRPVSERFRRKQDVIKEVIWLIEQEAYNYQDPITQFLQCLYVRFDFDGAQEKLQACYHVLRNDYFLSGWADAFLTEARQLIFETYCRIHQKIDINMLGQKLGMSAAEAEKWIVDLILDSKLVAKIDSRDNYVEMDTHSPSVYQQVLDRTERL--ASSTFRLGTDTQKIFGQPMGGYPDRR 491
            E+DLT K++ F D H ++      DFL+        +   DV++AK+ LL  T   D  +    EL   P+P ELE R         AL+D+   L     D   M  + +      E++T     PPE           L A Y+  KF+++ G Y+D +  +  Y          +  R   ALWG+  + I T++W       +++KEA+D+  + ++                        ++  ++LQ RTWL+HW LF +   P          D    I + +              D+Y   +Q N P +LRY+TT VI +K        R+++V+K+++ +I+QE+Y Y DPIT+F+QCLYV FDF+GAQ+ LQ C   L+ DYFL    D FL +AR+ IFETYCRIHQ IDI ML  KL M   +AEKW+V+LI  ++L AKIDS+ N V M    PSVY+QV+D T+ L    S      D  + +     G  DRR
Sbjct:    2 EFDLTRKMSEFLDRHQVIP---LLDFLIQHPDVEGSYNKEDVVKAKIDLLSNTGMVDYAMETHVELYGTPAPVELENRRDQVILVLHALEDDASPLLAIIQDDQLMQELSETNSFTMEHLTTQHDVPPE----------VLDAIYELGKFRFDCGSYEDTAALMWAYRTLANGN---NPEREFFALWGKFAADICTEKWDAALEDMNMLKEAIDSSGRSVL------------------------LNPLQQLQQRTWLIHWSLFVFFNHP----------DGRNGITDFLL------------SDKYLNTIQTNCPHILRYLTTAVITNK--------RRRNVMKDLVKVIQQESYAYSDPITEFVQCLYVNFDFEGAQDMLQKCEDTLKRDYFLYKMLDDFLEDARRTIFETYCRIHQVIDIGMLASKLNMVQYDAEKWVVNLIRHARLDAKIDSQANQVIMGVTVPSVYEQVVDSTKNLLIRGSVLAQNCDRPQGYSGGYRGDDDRR 440          
BLAST of NO09G02920 vs. NCBI_GenBank
Match: GAQ82532.1 (translation initiation factor 3 subunit E [Klebsormidium nitens])

HSP 1 Score: 244.6 bits (623), Expect = 7.400e-61
Identity = 168/477 (35.22%), Postives = 262/477 (54.93%), Query Frame = 0
Query:    4 YDLTHKIAPFADVHFLVQPDGPFDFLVGQAAYFQIPDVMRAKVALLQKTKNTDGEV---RALEELEEYPSPELEARSKALDDEEEVLREAAGDALDMFSIDDMTKIKEYVTAGATDPP---ERLECKEKLLAALPAYYDYAKFKYERGEYDDASIFLNNYIQAIGDRAAFSTVRYSNALWGRLGSAILTQQWHLVKEAVDAIDKHIMTVKRREDGVPPTKPTAADPDPIRSMSDREKLQLRTWLLHWCLFAYPATPEEARKREDAGDKWENILELIFPANDDKQGPGNGPDRYRQALQNNAPWLLRYMTTMVILHKRPVSERFRRKQDVIKEVIWLIEQEAYNYQDPITQFLQCLYVRFDFDGAQEKLQACYHVLRNDYFLSGWADAFLTEARQLIFETYCRIHQKIDINMLGQKLGMSAAEAEKWIVDLILDSKLVAKIDSRDNYVEMDTHSPSVYQQVLDRTERLASSTFRLGTD 475
            +DL  K++P+ D H LV P    +FL  +  Y +  D+++AK+ LL KT   D  +   +AL   E+ P   LE R+  ++   ++  +AA   +  F  D     + + +  A +     ER    +  + AL   Y YAKF++E G Y  A+ FL +Y Q   D       +  +ALWG+L +AIL Q+W   ++A++ +++    +K   D    T P +             +LQ RTWLLHW LF +           + G+    ++++ F             ++Y  A+Q NA  LLRY+ T VIL+K       RR+Q V++E++ +I+QE+Y Y DPITQFL+CLY+ +DF+GAQ+KL+ C  VL NDYF+       +  AR  IFETYC+IHQ +D  +L +KL +S  +AE+WIV+LI  S+L AKIDS+   V M    PSVY+Q++++T+ L + +F+L T+
Sbjct:    3 HDLVPKMSPYLDRH-LVFP--LLEFLQEKQVYPE-EDILKAKIDLLGKTNMVDYGMDIHKALYRTEDVPEEMLERRADVVERMRDLDEKAA--PIIQFLQDPAHVDQLHPSDKAYNVQLLRERFNIGQDQIEAL---YWYAKFQFECGNYSGAAEFLYSYRQLSSD-----ADKSMSALWGKLAAAILMQKW---EDALEDLNR----LKEIIDSKAFTSPLS-------------QLQQRTWLLHWSLFVF--------FNHENGNNL--LIDMFF------------QEKYLNAIQQNAHHLLRYLATAVILNK-------RRRQLVMRELMKVIQQESYTYADPITQFLECLYIEYDFEGAQQKLKECEEVLANDYFIGSVRGELMDNARNYIFETYCKIHQCLDTKILSEKLSLSPEDAERWIVNLIRQSRLEAKIDSKAGTVIMTNPHPSVYEQIIEKTKSLTARSFQLATN 416          
BLAST of NO09G02920 vs. NCBI_GenBank
Match: XP_024364389.1 (eukaryotic translation initiation factor 3 subunit E-like [Physcomitrella patens] >PNR28145.1 hypothetical protein PHYPA_028737 [Physcomitrella patens])

HSP 1 Score: 244.2 bits (622), Expect = 9.700e-61
Identity = 170/489 (34.76%), Postives = 254/489 (51.94%), Query Frame = 0
Query:    1 MAEYDLTHKIAPFADVHFLVQPDGPFDFLVGQAAYFQIPDVMRAKVALLQKTKNTDGEV---RALEELEEYPSPELEARSKALDDEEEVLREAAGDALDMFS----IDDMTKIKEYVTAGATDPPERLECKEKLLAALPAYYDYAKFKYERGEYDDASIFLNNYIQAIGDRAAFSTVRYSNALWGRLGSAILTQQWHLVKEAVDAIDKHIMTVKRREDGVPPTKPTAADPDPIRSMSDREKLQLRTWLLHWCLFAYPATPEEARKREDAGDKWENILELIFPANDDKQGPGNGPDRYRQALQNNAPWLLRYMTTMVILHKRPVSERFRRKQDVIKEVIWLIEQEAYNYQDPITQFLQCLYVRFDFDGAQEKLQACYHVLRNDYFL------SGWA-----DAFLTEARQLIFETYCRIHQKIDINMLGQKLGMSAAEAEKWIVDLILDSKLVAKIDSRDNYVEMDTHSPSVYQQVLDRTERLASSTFRL 472
            MA+YDLT  +APF D H LV P    +FL     Y     +++AK+ LL KT   D  +   ++L   E+ P   ++ R++ +    +VL E+A   +        + ++   ++Y         ER +     + AL   Y YAKF++E G Y  AS +L  Y          ++ R  +ALWG+L   IL Q W +  E V+ + + I                    D     S   +LQ RTWL+HW LF +           D G     I++L F             +RY  A+Q NA  LLRY+ T VI++K        R+++VIKE+I +I+QE Y Y DP+T+FL+CLYV +DF+GAQ+KL+ C  V+ +D+FL      +G+      D F+  AR  IFETYCRIHQ IDI ML QKL M+  +A +WI +LI +++L AKIDS+   V M T SP++Y+Q++++T+ L   ++ L
Sbjct:    1 MAQYDLTAAVAPFLDRH-LVFP--LLEFLQENQLYSD-DQILKAKIELLAKTNMVDYAMDIHKSLYHTEDVPQDMVDRRAEVV-GRLKVLEESAAPLISFLQNPALVQELRSDQQY---NLQMLQERYQIGSDQIEAL---YQYAKFQFECGNYSGASDYLYQY-----RTLCTNSERSISALWGKLACEILMQNWDVATEEVNRLKETI--------------------DSKSFASPLSQLQQRTWLMHWSLFIF--------FNHDNGK--NGIIDLFF------------SERYLNAIQTNAHHLLRYLVTAVIVNK--------RRRNVIKELIKVIQQERYTYSDPVTEFLECLYVNYDFEGAQQKLRECEEVIVSDFFLGKQLSENGFVTIPLRDEFMENARLFIFETYCRIHQCIDIGMLSQKLNMNYDDAARWIANLIRNARLDAKIDSKMGTVVMGTQSPNIYEQIIEKTKVLGQRSYAL 423          
BLAST of NO09G02920 vs. NCBI_GenBank
Match: XP_009032531.1 (hypothetical protein AURANDRAFT_70037 [Aureococcus anophagefferens] >EGB12909.1 hypothetical protein AURANDRAFT_70037 [Aureococcus anophagefferens])

HSP 1 Score: 244.2 bits (622), Expect = 9.700e-61
Identity = 177/486 (36.42%), Postives = 246/486 (50.62%), Query Frame = 0
Query:    2 AEYDLTHKIAPFADVHFLVQPDGPFDFLVGQAAYFQIPDVMRAKVALLQKTKNTDGEVRALEEL--------EEYPSPE-LEARSKALDDEE--EVLREAAGDALDMFSIDDMTKIKEYVTAGATDPPERLECKEKLLAALPA-YYDYAKFKYERGEYDDASIFLNNYIQAIGDRAAFSTVRYSNALWGRLGSAILTQQW----HLVKEAVDAIDKHIMTVKRREDGVPPTKPTAADPDPIRSMSDREKLQLRTWLLHWCLFAYPATPEEARKREDAGDKWENILELIFPANDDKQGPGNGPDRYRQALQNNAPWLLRYMTTMVILHKRPVSERFRRKQDVIKEVIWLIEQEAYNYQDPITQFLQCLYVRFDFDGAQEKLQACYHVLRNDYFLSGWADAFLTEARQLIFETYCRIHQKIDINMLGQKLGMSAAEAEKWIVDLILDSKLVAKIDSRDNYVEMDTHSPSVYQQVLDRTERLASSTFRL 472
            +EY++T KI+PF D H LV P    DFL    +Y +   V RA++ LL  T   D  +     L        E  PS E +EAR  A   +   EVL +A        +++ M +   Y  A        LE K  +  A  A Y+++AKF YE G+Y+ A   L++Y+                ALWG+ GS +L + W    H +     AID         + G PP                 E+LQ R+WLLHW LF +      A+  +   D + N                   ++Y QA+Q N PWLLRY+TT VI++K        R++  +K+++ +I  E     DP+TQFL+CLYV+FDF+GAQ  L  C   LR+DYFL   ADAF+ +AR  +FETYCRIH KIDI ML  KL M   +AE+W+VDLI  + L AKIDS+D+ V M T + SVY QV+D+T  L++ +  L
Sbjct:   17 SEYEVTQKISPFLDAH-LVFP--LLDFLEENTSY-EAGSVQRARLDLLAPTNMVDYAIEIRSALGDANAALVEGAPSVEAMEARRDAAKVQRVAEVLEDAE-------AVEQMKRDGTYTAAD-------LEAKHGIGPANWADYFEFAKFLYECGDYEGARDMLDHYLALCFPAGKKLDASGFRALWGKFGSEVLLKNWEGALHDLGRLRAAID---------DFGAPPL----------------EQLQQRSWLLHWSLFVF---FNHAKGHDGIIDLFLN-------------------EKYLQAIQTNCPWLLRYLTTAVIINK--------RRRSTLKDLVRVITMEHDLKADPVTQFLECLYVKFDFEGAQRTLAECDKALRSDYFLCNCADAFMEDARLFVFETYCRIHTKIDIGMLSDKLVMEREKAERWVVDLIRGALLDAKIDSQDSCVVMGTDTTSVYSQVIDKTRDLSNRSAAL 429          
BLAST of NO09G02920 vs. NCBI_GenBank
Match: ORX94404.1 (eukaryotic translation initiation factor 3, subunit 6 [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 244.2 bits (622), Expect = 9.700e-61
Identity = 167/490 (34.08%), Postives = 256/490 (52.24%), Query Frame = 0
Query:    1 MAEYDLTHKIAPFADVHFLVQPDGPFDFLVGQAAYFQIPDVMRAKVALLQKTKNTDGEV---RALEELEEYPSPELEARSKALDDEEEVLREAAGDALDMFSIDDMTKIKEYVTAGATDPPERLECKEKLLAALP----AYYDYAKFKYERGEYDDASIFLNNYIQAIGDRAAFSTVRYSN--ALWGRLGSAILTQQWHLVKEAV----DAIDKHIMTVKRREDGVPPTKPTAADPDPIRSMSDREKLQLRTWLLHWCLFAYPATPEEARKREDAGDKWENILELIFPANDDKQGPGNGPDRYRQALQNNAPWLLRYMTTMVILHKRPVSERFRRKQDVIKEVIWLIEQEAYNYQDPITQFLQCLYVRFDFDGAQEKLQACYHVLRNDYFLSGWADAFLTEARQLIFETYCRIHQKIDINMLGQKLGMSAAEAEKWIVDLILDSKLVAKIDSRDNYVEMDTHSPSVYQQVLDRTERLASSTFRLGTDTQK 478
            MA+YDLT ++ PF D H LV P    +FL  +  Y +  D+++AK  LL KT   D      + +  +EE P+   E R K +   EE+  EA         + ++ +  E ++A   D  + L    +     P      Y + K+++  G Y  ++  L ++          ST    N  ALWG+L S ILT  W +  E +    DAID+                   + P P+       +LQ R+WL+HW LF +      A+ R       + I+++ F              ++   +Q++ PW+LRY+ T VI +K        R++ +++E++ +IEQE+Y Y+DPI +F++CLYV+FDF+GAQ+KL  C  VL ND+FL    D F+  AR  I ET+CRIHQKIDIN L Q L MS  E EKWIV+L+ D+++ AKID ++N V M+T  P++YQQV++RT+ L+  +  L T  +K
Sbjct:    2 MAQYDLTSRMVPFLDRH-LVYP--LLEFLTLKEIYPE-EDLLQAKYDLLSKTNMIDTAAELFKQIHHVEEAPAEFTEKRKKVISTLEELQNEAG-------KVLEVIEKPEVISALRQDKLQNLHFLREKYNITPEMVSTLYQFGKYQFNCGIYGASADMLYHF-------RVLSTDPEMNLSALWGKLASEILTGNWEVALEDLHKLKDAIDQ------------------KSFPSPL------HQLQQRSWLIHWSLFVF---FNHAQGR-------DGIIDMFF------------QPQFINTIQSSCPWMLRYLATAVITNK--------RRKSIMRELVRVIEQESYVYEDPIIEFVKCLYVKFDFEGAQQKLGECEQVLANDFFLVATLDDFIENARCFILETHCRIHQKIDINELSQSLNMSQQEGEKWIVNLVRDTRVDAKIDFQENTVLMNTSYPTIYQQVIERTKGLSFRSQVLATSIEK 419          
BLAST of NO09G02920 vs. NCBI_GenBank
Match: XP_024383292.1 (eukaryotic translation initiation factor 3 subunit E-like [Physcomitrella patens] >XP_024383293.1 eukaryotic translation initiation factor 3 subunit E-like [Physcomitrella patens] >XP_024383294.1 eukaryotic translation initiation factor 3 subunit E-like [Physcomitrella patens] >PNR49668.1 hypothetical protein PHYPA_011564 [Physcomitrella patens])

HSP 1 Score: 243.8 bits (621), Expect = 1.300e-60
Identity = 167/492 (33.94%), Postives = 260/492 (52.85%), Query Frame = 0
Query:    1 MAEYDLTHKIAPFADVHFLVQPDGPFDFLVGQAAYFQIPDVMRAKVALLQKTKNTDGEV---RALEELEEYPSPELEARSKALDDEEEVLREAAGDALDMFS----IDDMTKIKEYVTAGATDPPERLECKEKLLAALPAYYDYAKFKYERGEYDDASIFLNNYIQAIGDRAAFSTVRYSNALWGRLGSAILTQQWHLVKEAVDAIDKHIMTVKRREDGVPPTKPTAADPDPIRSMSDREKLQLRTWLLHWCLFAYPATPEEARKREDAGDKWENILELIFPANDDKQGPGNGPDRYRQALQNNAPWLLRYMTTMVILHKRPVSERFRRKQDVIKEVIWLIEQEAYNYQDPITQFLQCLYVRFDFDGAQEKLQACYHVLRNDYFL------SGWA-----DAFLTEARQLIFETYCRIHQKIDINMLGQKLGMSAAEAEKWIVDLILDSKLVAKIDSRDNYVEMDTHSPSVYQQVLDRTERLASSTFRLGTD 475
            MA+YDLT ++APF D H LV P    +FL  +  Y     ++++K+ LL KT   D  +   ++L   E+ P   ++ R++ +    +VL E+A   +        + ++   K+Y         ER +   + + AL   Y YAKF++E G Y  AS +L  Y          ++ R  +ALWG+L   +L Q W    + ++ + + I                    D     S   +LQ RTWL+HW LF +           D G     I++L F             +RY  A+Q NA  LLRY+ T VI++K        R++++IKE+I +I+QE Y+Y DP+T+FL+CLYV +DF+GAQ KL+ C  ++ +D+FL      +G+      D F+  AR  IFETYCRIHQ IDI ML QKL M+  +AE+WIV+LI +++L AKIDS+   V M T  P++Y+Q++++T+ L+  ++ L T+
Sbjct:    1 MAQYDLTARVAPFLDRH-LVFP--LLEFLQDKQLYSD-DQILKSKIELLAKTNMVDYAMDIHKSLYHTEDVPQDMVDRRAEVV-GRLKVLEESAAPLISFLQNPALVQELRSDKQY---NLQMLQERYQIGSEQIEAL---YQYAKFQFECGNYSGASDYLYEY-----RALCTNSERSISALWGKLACEVLMQNWDTATDELNRLKEFI--------------------DSKNFASPLNQLQQRTWLMHWSLFIF--------FNHDNGR--NGIIDLFF------------SERYLNAIQTNAHHLLRYLATAVIVNK--------RRRNMIKELIKVIQQERYSYSDPVTEFLECLYVNYDFEGAQRKLRECEELIVSDFFLGKQTSENGFVPIPLLDEFMENARLFIFETYCRIHQCIDICMLSQKLNMNYDDAERWIVNLIRNARLDAKIDSKMGTVVMGTQYPNIYEQIIEKTKVLSQRSYALTTN 426          
BLAST of NO09G02920 vs. NCBI_GenBank
Match: ACN40777.1 (unknown [Picea sitchensis])

HSP 1 Score: 243.8 bits (621), Expect = 1.300e-60
Identity = 177/496 (35.69%), Postives = 254/496 (51.21%), Query Frame = 0
Query:    1 MAEYDLTHKIAPFADVHFLVQPDGPFDFLVGQAAYFQIPD--VMRAKVALLQKTKNTDGEV---RALEELEEYPSP------ELEARSKALDDEEEVLREAAGDALDMFSIDDMTKIKEYVTAGATDPPERLECKEKLLAALPAYYDYAKFKYERGEYDDASIFLNNYIQAIGDRAAFSTVRYSNALWGRLGSAILTQQWHLVKEAVDAIDKHIMTVKRREDGVPPTKPTAADPDPIRSMSDREKLQLRTWLLHWCLFAYPATPEEARKREDAGDKWENILELIFPANDDKQGPGNGPDRYRQALQNNAPWLLRYMTTMVILHKRPVSERFRRKQDVIKEVIWLIEQEAYNYQDPITQFLQCLYVRFDFDGAQEKLQACYHVLRNDYFLSGWA-----------DAFLTEARQLIFETYCRIHQKIDINMLGQKLGMSAAEAEKWIVDLILDSKLVAKIDSRDNYVEMDTHSPSVYQQVLDRTERLASSTFRLGTD 475
            MAEYDLT KIAP  D H LV P    +FL  +  Y   PD  ++++K+ LL KT   D  +   ++L   E+ P        E+ AR K+L   EE+         +   + ++   K+Y      D   R +     + AL   Y YAKF++E G Y  A+ FL  Y          ++ R  +ALWG+L + IL Q W +  E ++ + + I                    D     S   +LQ RTWL+HW LF +    E  R           I++L F             +RY  A+Q NA  LLRY+ T V+++K        R+++++KE+I +I+QE Y Y+DPIT+FL+CLYV +DF+GAQ+KL  C  V+ ND FL               D FL  AR  IFETYCRIHQ IDI ML +KL MS  EAE+WIV+L+ ++KL AKIDS    V M T+  +VY+Q+++ T++L+  T+ L  +
Sbjct:    1 MAEYDLTSKIAPHLDRH-LVFP--LLEFLQEKQLY---PDDQILKSKIDLLSKTNMVDYAMDIHKSLYRTEDVPQDMTDRRVEVVARLKSL---EEMAAPLISFLQNPSLVQELRSDKQYNLQMLND---RYQIGPNQIEAL---YQYAKFQFECGNYSGAADFLYQY-----RTFCTNSDRSLSALWGKLAAEILMQNWDIALEELNRLKEII--------------------DSKNFSSPLNQLQNRTWLMHWSLFIF-FNHENGR---------NGIIDLFF------------QERYLNAIQTNAHHLLRYLATAVVVNK--------RRRNMLKELIKVIQQEQYTYKDPITEFLECLYVNYDFEGAQQKLVECEKVILNDPFLGKQVQEGNFVTVPLRDEFLENARLFIFETYCRIHQCIDIRMLAEKLSMSYDEAERWIVNLVKNAKLDAKIDSTSGTVVMGTNHTNVYEQIIENTKQLSMRTYVLANN 426          
BLAST of NO09G02920 vs. NCBI_GenBank
Match: OAE20257.1 (hypothetical protein AXG93_3960s1480 [Marchantia polymorpha subsp. ruderalis] >PTQ47792.1 hypothetical protein MARPO_0007s0188 [Marchantia polymorpha])

HSP 1 Score: 243.8 bits (621), Expect = 1.300e-60
Identity = 170/492 (34.55%), Postives = 259/492 (52.64%), Query Frame = 0
Query:    1 MAEYDLTHKIAPFADVHFLVQPDGPFDFLVGQAAYFQIPDVMRAKVALLQKTKNTDGEV---RALEELEEYPSPELEARSKALDDEEEVLREAAGDALDMFS----IDDMTKIKEYVTAGATDPPERLECKEKLLAALPAYYDYAKFKYERGEYDDASIFLNNYIQAIGDRAAFSTVRYSNALWGRLGSAILTQQWHLVKEAVDAIDKHIMTVKRREDGVPPTKPTAADPDPIRSMSDREKLQLRTWLLHWCLFAYPATPEEARKREDAGDKWENILELIFPANDDKQGPGNGPDRYRQALQNNAPWLLRYMTTMVILHKRPVSERFRRKQDVIKEVIWLIEQEAYNYQDPITQFLQCLYVRFDFDGAQEKLQACYHVLRNDYFL------SGWA-----DAFLTEARQLIFETYCRIHQKIDINMLGQKLGMSAAEAEKWIVDLILDSKLVAKIDSRDNYVEMDTHSPSVYQQVLDRTERLASSTFRLGTD 475
            MA+YDLT K+AP+ D H LV P    +FL  +  Y     +++AK+ LL KT   D  +   ++L   E+ P   ++ R + +    + L E A   +        + ++   K+Y      D   R +   + + AL   Y YAKF++E G Y  AS +L  Y          ++ R  +ALWG+L + IL Q W +  E ++ + + I                    D     S   +LQ RTW++HW LF +    E  R           I++L F             +RY  A+Q NA  LLRY+ T VI++K        R+++++K++I +I+QE Y Y+DPIT+FL+CLYV +DF+GAQ+KL+ C  ++ ND+FL      +G+      D FL  AR  IFETYCRIHQ IDI ML QKL M+  +AE+WIV+LI +++L AKIDS+   V M T   +VY+Q++D+T++LA  ++ L  +
Sbjct:    1 MAQYDLTAKVAPYLDRH-LVFP--LLEFLQEKQLYAD-DQILKAKIELLAKTNMVDYAMDIHKSLYHTEDVPQEMVDRRVEVV-GRLKSLEELAAPLISFLQNPQLVQELRSDKQYNLQMLHD---RYKIGSEQIEAL---YQYAKFQFECGNYSGASDYLYQY-----RTLCTNSDRSFSALWGKLAAEILMQNWDIAIEELNRLKEII--------------------DSKNFSSPLNQLQQRTWVMHWALFIF-FNHENGR---------NGIIDLFF------------QERYLNAIQTNAHHLLRYLATAVIVNK--------RRRNMLKDLIKVIQQEHYTYKDPITEFLECLYVNYDFEGAQKKLRECEELILNDFFLGKEVQDNGFVTVPLRDEFLENARLFIFETYCRIHQCIDIGMLSQKLNMNYDDAERWIVNLIRNARLDAKIDSKMGTVVMGTQYANVYEQIIDKTKQLAVRSYMLANN 426          
BLAST of NO09G02920 vs. NCBI_GenBank
Match: XP_004226360.1 (PREDICTED: eukaryotic translation initiation factor 3 subunit E-B isoform X1 [Ciona intestinalis])

HSP 1 Score: 243.0 bits (619), Expect = 2.200e-60
Identity = 165/486 (33.95%), Postives = 248/486 (51.03%), Query Frame = 0
Query:    1 MAEYDLTHKIAPFADVHFLVQPDGPFDFLVGQAAYFQIPDVMRAKVALLQKTKNTDGEV---RALEELEEYPSPELEARSKALDDEEEVLREAAGDALDMFSIDDMTKIKEYVTAGATDPPERLECKEK----LLAALPAYYDYAKFKYERGEYDDAS--IFLNNYIQAIGDRAAFSTVRYSNALWGRLGSAILTQQWHLVKEAVDAIDKHIMTVKRREDGVPPTKPTAADPDPIRSMSDREKLQLRTWLLHWCLFAYPATPEEARKREDAGDKWENILELIFPANDDKQGPGNGPDRYRQALQNNAPWLLRYMTTMVILHKRPVSERFRRKQDVIKEVIWLIEQEAYNYQDPITQFLQCLYVRFDFDGAQEKLQACYHVLRNDYFLSGWADAFLTEARQLIFETYCRIHQKIDINMLGQKLGMSAAEAEKWIVDLILDSKLVAKIDSRDNYVEMDTHSPSVYQQVLDRTERLASSTFRLGTDTQK 478
            MA++DLT K+  + D H +     P    + +   F   D+ + K+ LL  T   D  +   + L   EE PS   + R+  +     +L+        +  I +  ++++ +     D  +  E  EK     L  L   YDYAKF+YE G Y  A+  ++ +  +    D+ A       ++LWG+L S IL Q W    E +  + + I                    D     S  + LQ RTWL+HW LF +      A+ R++       I++L        Q P      Y   +Q   PW+LRY+TT VI +K        R++ V+K+++ +I+QEAY Y+DP+T+FL+CLYV FDFD AQEKL+ C  VL ND+FL    D F+  AR  IFET+CRIHQ I I+ML  KL MS  EAE+WIV+LI +++L AKIDS+  +V M T + S Y+QV+++T+ L   T  L T+ ++
Sbjct:    1 MAQFDLTSKVGCYLDRHLVF----PLLEFLSERDIFDERDLHKGKLELLSNTNMVDFAMDVHKTLYPGEEIPSSLRDKRNNVV----SLLKSYTVKTEPIVHIFEQDEVRKQIET-TRDGKQLFEYLEKNHNFKLEDLDTLYDYAKFQYECGNYSGAAEYLYFHRVLVQPDDKRAM------DSLWGKLASEILMQDWDTAWEDLHRLQESI--------------------DSNTIASPLQLLQQRTWLIHWSLFVF---FNHAKGRDE-------IIDLFL-----YQPP------YLNTIQTMCPWVLRYLTTAVITNK--------RRRQVLKDLVRVIQQEAYTYRDPVTEFLECLYVHFDFDKAQEKLRECELVLSNDFFLIACLDDFIENARLFIFETFCRIHQCISIDMLADKLNMSVDEAERWIVNLIRNARLDAKIDSKMGHVMMGTQAVSSYEQVIEKTKSLGLRTQMLSTNVER 422          
BLAST of NO09G02920 vs. NCBI_GenBank
Match: XP_002130084.2 (PREDICTED: eukaryotic translation initiation factor 3 subunit E-B isoform X2 [Ciona intestinalis])

HSP 1 Score: 243.0 bits (619), Expect = 2.200e-60
Identity = 165/486 (33.95%), Postives = 248/486 (51.03%), Query Frame = 0
Query:    1 MAEYDLTHKIAPFADVHFLVQPDGPFDFLVGQAAYFQIPDVMRAKVALLQKTKNTDGEV---RALEELEEYPSPELEARSKALDDEEEVLREAAGDALDMFSIDDMTKIKEYVTAGATDPPERLECKEK----LLAALPAYYDYAKFKYERGEYDDAS--IFLNNYIQAIGDRAAFSTVRYSNALWGRLGSAILTQQWHLVKEAVDAIDKHIMTVKRREDGVPPTKPTAADPDPIRSMSDREKLQLRTWLLHWCLFAYPATPEEARKREDAGDKWENILELIFPANDDKQGPGNGPDRYRQALQNNAPWLLRYMTTMVILHKRPVSERFRRKQDVIKEVIWLIEQEAYNYQDPITQFLQCLYVRFDFDGAQEKLQACYHVLRNDYFLSGWADAFLTEARQLIFETYCRIHQKIDINMLGQKLGMSAAEAEKWIVDLILDSKLVAKIDSRDNYVEMDTHSPSVYQQVLDRTERLASSTFRLGTDTQK 478
            MA++DLT K+  + D H +     P    + +   F   D+ + K+ LL  T   D  +   + L   EE PS   + R+  +     +L+        +  I +  ++++ +     D  +  E  EK     L  L   YDYAKF+YE G Y  A+  ++ +  +    D+ A       ++LWG+L S IL Q W    E +  + + I                    D     S  + LQ RTWL+HW LF +      A+ R++       I++L        Q P      Y   +Q   PW+LRY+TT VI +K        R++ V+K+++ +I+QEAY Y+DP+T+FL+CLYV FDFD AQEKL+ C  VL ND+FL    D F+  AR  IFET+CRIHQ I I+ML  KL MS  EAE+WIV+LI +++L AKIDS+  +V M T + S Y+QV+++T+ L   T  L T+ ++
Sbjct:    1 MAQFDLTSKVGCYLDRHLVF----PLLEFLSERDIFDERDLHKGKLELLSNTNMVDFAMDVHKTLYPGEEIPSSLRDKRNNVV----SLLKSYTVKTEPIVHIFEQDEVRKQIET-TRDGKQLFEYLEKNHNFKLEDLDTLYDYAKFQYECGNYSGAAEYLYFHRVLVQPDDKRAM------DSLWGKLASEILMQDWDTAWEDLHRLQESI--------------------DSNTIASPLQLLQQRTWLIHWSLFVF---FNHAKGRDE-------IIDLFL-----YQPP------YLNTIQTMCPWVLRYLTTAVITNK--------RRRQVLKDLVRVIQQEAYTYRDPVTEFLECLYVHFDFDKAQEKLRECELVLSNDFFLIACLDDFIENARLFIFETFCRIHQCISIDMLADKLNMSVDEAERWIVNLIRNARLDAKIDSKMGHVMMGTQAVSSYEQVIEKTKSLGLRTQMLSTNVER 422          
The following BLAST results are available for this feature:
BLAST of NO09G02920 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005715226.15.700e-6133.60Translation initiation factor eIF3, subunit E [Cho... [more]
GAQ82532.17.400e-6135.22translation initiation factor 3 subunit E [Klebsor... [more]
XP_024364389.19.700e-6134.76eukaryotic translation initiation factor 3 subunit... [more]
XP_009032531.19.700e-6136.42hypothetical protein AURANDRAFT_70037 [Aureococcus... [more]
ORX94404.19.700e-6134.08eukaryotic translation initiation factor 3, subuni... [more]
XP_024383292.11.300e-6033.94eukaryotic translation initiation factor 3 subunit... [more]
ACN40777.11.300e-6035.69unknown [Picea sitchensis][more]
OAE20257.11.300e-6034.55hypothetical protein AXG93_3960s1480 [Marchantia p... [more]
XP_004226360.12.200e-6033.95PREDICTED: eukaryotic translation initiation facto... [more]
XP_002130084.22.200e-6033.95PREDICTED: eukaryotic translation initiation facto... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010825NSK010825Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G02920.1NO09G02920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|528153gene_4256Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100101g1gene3049Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G02920.1NO09G02920.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G02920 ID=NO09G02920|Name=NO09G02920|organism=Nannochloropsis oceanica|type=gene|length=2181bp
TTATTAACTCAGCGCCTGTCTCACACAACCACCACAGAGCGAGGCGCCGG
CGGGTCTACCGCCCTCATACGAAGCTCTCCCCTCCGCGTCTTTTCCTCCC
TGCTGGACCATCGTCATATTTTCCTCCTCACAACACAACCATGGCGGAGT
ACGATCTCACGCACAAGATTGCACCCTTTGCGGACGTGCATTTCTTGGTG
CAGCCCGACGGTCCCTTTGACTTCTTGGTGGGGCAAGCCGCGTACTTCCA
AATTCCAGACGTCATGCGGGCCAAGGTGGCCTTGCTGCAAAAGACCAAGA
ACACCGACGGCGAAGTCCGTGCTCTGGAAGAACTGGAAGAATACCCTTCC
CCCGAGTTGGAAGCCCGGAGCAAGGCTTTGGATGACGAGGAGGAGGTCCT
GCGCGAAGCGGCGGGGGATGCCTTGGACATGTTTAGCATCGACGATATGA
CCAAAATCAAGGAATATGTCACGGCCGGGGCCACGGACCCCCCCGAGAGG
TTGGAGTGCAAGGAAAAGCTCCTGGCCGCCCTGCCGGCGTACTACGATTA
TGCTAAGTTTAAATACGAGCGAGGTGAATATGACGATGCCTCCATTTTTC
TCAACAACTACATCCAAGCCATCGGGGACCGTGCTGCCTTCTCCACAGTC
CGTTACTCCAATGCCTTGTGGGGACGACTCGGCTCCGCTATCCTCACTCA
ACAATGGCACCTAGTCAAGGAAGCTGTCGATGCGATCGACAAACACATCA
TGACAGTCAAGCGCCGCGAGGATGGCGTCCCCCCCACCAAACCAACCGCC
GCCGACCCCGACCCTATTCGCTCCATGTCTGACCGTGAAAAGCTTCAACT
CCGCACTTGGCTTCTCCACTGGTGCCTCTTCGCCTATCCCGCCACTCCCG
AAGAGGCCCGAAAGCGTGAGGATGCAGGCGACAAGTGGGAGAATATTTTG
GAGCTGATCTTTCCGGCGAACGACGATAAGCAAGGGCCAGGGAATGGCCC
GGATCGTTACAGGCAAGCTTTGCAGAACAATGCACCTTGGCTGCTGCGGT
ACATGACTACTATGGTTATTCTACACAAGCGCCCAGTGAGCGAGCGGTTC
AGGCGCAAGCAGGATGTCATCAAGGAGGTGATTTGGTTGATTGAACAAGA
GGCGTACAACTACCAAGATCCCATCACCCAATTCCTGCAGTGTTTGTATG
TGCGCTTCGACTTCGACGGCGCACAAGAGAAGCTCCAAGCGTGTTACCAC
GTCCTAAGGAATGATTACTTCTTGTCGGGGTGGGCGGACGCGTTTTTGAC
GGAGGCCAGACAGTTGATCTTCGAGACTTATTGCCGCATCCACCAAAAAA
TTGATATCAACATGCTGGGGCAGAAGCTGGGCATGTCCGCCGCCGAGGCC
GAGAAGTGGATCGTGGACCTGATCTTGGACTCTAAGCTTGTAGCGAAGAT
TGATTCGAGGGATAATTACGTGGAGATGGACACGCATTCGCCGTCGGTGT
ATCAGCAGgtgaaggatcaagggcgggaagtgagggagtgagagcggacg
gtgtggcggggggggaaggagagaggtcttcgacttttgccttgactggg
tggttagaaaaggaatatgtgtctgataatattctgcttctgtatgtctg
tatgcctgcctgattctcacattctcccccttcctcaccacgtccttttt
caaaacagGTGTTGGACCGCACGGAGCGACTGGCCTCGTCCACCTTCCGC
CTGGGCACGGACACGCAGAAAATCTTTGGGCAGCCCATGGGTGGCTATCC
CGATCGACGGGGTGGTGGAGGTGGAGGTCGAGGAGGGGAGGAGGGCGAGC
GGGGGGACAGGGGGGACCGTGGTGGGGGTCGTGGCGGTGGCCGGGGGGAG
GAGCGGCAGCCGTCGTTGAGGGCGCAAGGGTTGATGGATGGACAGCCGTC
AGAGAGGGACGAAAGGCGAGGAGTTGGCGGGCATGGAGGAGGAGGGGCAG
GGGGAGGGAGGGGTGTGCGAAGAGGCGGGAGTTAAGGATCATTTTGGGGT
GTGTAAGGGGAGGAGAGGCTGTTAGAATGGGGGAGTGGGAGGGAAAGTTA
GATGGGCGGAAGCGTCCGTGGAGCATCGAGAAAAGTGAAAAACAAAAGAA
AAGAAATTGTCGTGCAAGAAACGAAAGCGAT
back to top

protein sequence of NO09G02920.1

>NO09G02920.1-protein ID=NO09G02920.1-protein|Name=NO09G02920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=565bp
MAEYDLTHKIAPFADVHFLVQPDGPFDFLVGQAAYFQIPDVMRAKVALLQ
KTKNTDGEVRALEELEEYPSPELEARSKALDDEEEVLREAAGDALDMFSI
DDMTKIKEYVTAGATDPPERLECKEKLLAALPAYYDYAKFKYERGEYDDA
SIFLNNYIQAIGDRAAFSTVRYSNALWGRLGSAILTQQWHLVKEAVDAID
KHIMTVKRREDGVPPTKPTAADPDPIRSMSDREKLQLRTWLLHWCLFAYP
ATPEEARKREDAGDKWENILELIFPANDDKQGPGNGPDRYRQALQNNAPW
LLRYMTTMVILHKRPVSERFRRKQDVIKEVIWLIEQEAYNYQDPITQFLQ
CLYVRFDFDGAQEKLQACYHVLRNDYFLSGWADAFLTEARQLIFETYCRI
HQKIDINMLGQKLGMSAAEAEKWIVDLILDSKLVAKIDSRDNYVEMDTHS
PSVYQQVLDRTERLASSTFRLGTDTQKIFGQPMGGYPDRRGGGGGGRGGE
EGERGDRGDRGGGRGGGRGEERQPSLRAQGLMDGQPSERDERRGVGGHGG
GGAGGGRGVRRGGS*
back to top
Synonyms
Publications