|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:857561..859741 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G02920.1 vs.
Match: EWM27525.1 (eukaryotic translation initiation factor 3 subunit e [Nannochloropsis gaditana]) HSP 1 Score: 881.3 bits (2276), Expect = 1.600e-252 Identity = 434/498 (87.15%), Postives = 461/498 (92.57%), Query Frame = 0
Query: 1 MAEYDLTHKIAPFADVHFLVQPDGPFDFLVGQAAYFQIPDVMRAKVALLQKTKNTDGEVRALEELEEYPSPELEARSKALDDEEEVLREAAGDALDMFSIDDMTKIKEYVTAGATDPPERLECKEKLLAALPAYYDYAKFKYERGEYDDASIFLNNYIQAIGDRAAFSTVRYSNALWGRLGSAILTQQWHLVKEAVDAIDKHIMTVKRREDGVPPTKPTAADPDPIRSMSDREKLQLRTWLLHWCLFAYPATPEEARKREDAGDKWENILELIFPANDDKQGPGNGPDRYRQALQNNAPWLLRYMTTMVILHKRPVSERFRRKQDVIKEVIWLIEQEAYNYQDPITQFLQCLYVRFDFDGAQEKLQACYHVLRNDYFLSGWADAFLTEARQLIFETYCRIHQKIDINMLGQKLGMSAAEAEKWIVDLILDSKLVAKIDSRDNYVEMDTHSPSVYQQVLDRTERLASSTFRLGTDTQKIFGQPMGGYPDRRGGGGGGRG 499
MAEYDLT KIAPF DVHFLVQ DGP DFL+ QA Y+ DVMRAK+ALL KTKN DG++RALEEL+E PELEA+ +A D+ EEVLREAAGDALDMFS++DMT IKEYVTAGATDP E+LE KEKLLAALPAYYDYAKFKYERGEYDDA +FLNNYIQAIGDRAAFSTVRYS+ALWGRLG+ ILTQQWHLVK+AV+AIDKHIMTVKRREDGVPPT P+ +DPDPIRSMSDREKLQLRTW+LHWCLFAYP TP+EARKRE AGDKWENILELIFP ND+KQGPGNGPDRYRQA+QNNAPWLLRY+TTMVILHKRP+SERFRRKQDVIKEVIWLIEQEAY YQDPITQFLQCLYVRFDFDGAQEKLQACYHVLRNDYFLSGWADAFL EARQLIFETYCRIHQKIDINMLGQKLGMS AEAEKWIVDLILDSKLVAKIDSRDNYVEM+T SPSVY QVLDRTERLASSTFRLGTDTQKIFGQ +GGYPD RG GG RG
Sbjct: 1 MAEYDLTQKIAPFTDVHFLVQSDGPLDFLIEQAEYYSYDDVMRAKLALLAKTKNVDGQLRALEELQEDIPPELEAQQQANDEREEVLREAAGDALDMFSLEDMTTIKEYVTAGATDPAEKLEMKEKLLAALPAYYDYAKFKYERGEYDDAYLFLNNYIQAIGDRAAFSTVRYSHALWGRLGAVILTQQWHLVKDAVEAIDKHIMTVKRREDGVPPTMPSPSDPDPIRSMSDREKLQLRTWVLHWCLFAYPVTPDEARKRESAGDKWENILELIFPVNDEKQGPGNGPDRYRQAVQNNAPWLLRYVTTMVILHKRPMSERFRRKQDVIKEVIWLIEQEAYTYQDPITQFLQCLYVRFDFDGAQEKLQACYHVLRNDYFLSGWADAFLVEARQLIFETYCRIHQKIDINMLGQKLGMSPAEAEKWIVDLILDSKLVAKIDSRDNYVEMNTRSPSVYHQVLDRTERLASSTFRLGTDTQKIFGQTLGGYPD-RGATGGRRG 497
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G02920.1 ID=NO09G02920.1|Name=NO09G02920.1|organism=Nannochloropsis oceanica|type=mRNA|length=1981bp TTATTAACTCAGCGCCTGTCTCACACAACCACCACAGAGCGAGGCGCCGG CGGGTCTACCGCCCTCATACGAAGCTCTCCCCTCCGCGTCTTTTCCTCCC TGCTGGACCATCGTCATATTTTCCTCCTCACAACACAACCATGGCGGAGT ACGATCTCACGCACAAGATTGCACCCTTTGCGGACGTGCATTTCTTGGTG CAGCCCGACGGTCCCTTTGACTTCTTGGTGGGGCAAGCCGCGTACTTCCA AATTCCAGACGTCATGCGGGCCAAGGTGGCCTTGCTGCAAAAGACCAAGA ACACCGACGGCGAAGTCCGTGCTCTGGAAGAACTGGAAGAATACCCTTCC CCCGAGTTGGAAGCCCGGAGCAAGGCTTTGGATGACGAGGAGGAGGTCCT GCGCGAAGCGGCGGGGGATGCCTTGGACATGTTTAGCATCGACGATATGA CCAAAATCAAGGAATATGTCACGGCCGGGGCCACGGACCCCCCCGAGAGG TTGGAGTGCAAGGAAAAGCTCCTGGCCGCCCTGCCGGCGTACTACGATTA TGCTAAGTTTAAATACGAGCGAGGTGAATATGACGATGCCTCCATTTTTC TCAACAACTACATCCAAGCCATCGGGGACCGTGCTGCCTTCTCCACAGTC CGTTACTCCAATGCCTTGTGGGGACGACTCGGCTCCGCTATCCTCACTCA ACAATGGCACCTAGTCAAGGAAGCTGTCGATGCGATCGACAAACACATCA TGACAGTCAAGCGCCGCGAGGATGGCGTCCCCCCCACCAAACCAACCGCC GCCGACCCCGACCCTATTCGCTCCATGTCTGACCGTGAAAAGCTTCAACT CCGCACTTGGCTTCTCCACTGGTGCCTCTTCGCCTATCCCGCCACTCCCG AAGAGGCCCGAAAGCGTGAGGATGCAGGCGACAAGTGGGAGAATATTTTG GAGCTGATCTTTCCGGCGAACGACGATAAGCAAGGGCCAGGGAATGGCCC GGATCGTTACAGGCAAGCTTTGCAGAACAATGCACCTTGGCTGCTGCGGT ACATGACTACTATGGTTATTCTACACAAGCGCCCAGTGAGCGAGCGGTTC AGGCGCAAGCAGGATGTCATCAAGGAGGTGATTTGGTTGATTGAACAAGA GGCGTACAACTACCAAGATCCCATCACCCAATTCCTGCAGTGTTTGTATG TGCGCTTCGACTTCGACGGCGCACAAGAGAAGCTCCAAGCGTGTTACCAC GTCCTAAGGAATGATTACTTCTTGTCGGGGTGGGCGGACGCGTTTTTGAC GGAGGCCAGACAGTTGATCTTCGAGACTTATTGCCGCATCCACCAAAAAA TTGATATCAACATGCTGGGGCAGAAGCTGGGCATGTCCGCCGCCGAGGCC GAGAAGTGGATCGTGGACCTGATCTTGGACTCTAAGCTTGTAGCGAAGAT TGATTCGAGGGATAATTACGTGGAGATGGACACGCATTCGCCGTCGGTGT ATCAGCAGGTGTTGGACCGCACGGAGCGACTGGCCTCGTCCACCTTCCGC CTGGGCACGGACACGCAGAAAATCTTTGGGCAGCCCATGGGTGGCTATCC CGATCGACGGGGTGGTGGAGGTGGAGGTCGAGGAGGGGAGGAGGGCGAGC GGGGGGACAGGGGGGACCGTGGTGGGGGTCGTGGCGGTGGCCGGGGGGAG GAGCGGCAGCCGTCGTTGAGGGCGCAAGGGTTGATGGATGGACAGCCGTC AGAGAGGGACGAAAGGCGAGGAGTTGGCGGGCATGGAGGAGGAGGGGCAG GGGGAGGGAGGGGTGTGCGAAGAGGCGGGAGTTAAGGATCATTTTGGGGT GTGTAAGGGGAGGAGAGGCTGTTAGAATGGGGGAGTGGGAGGGAAAGTTA GATGGGCGGAAGCGTCCGTGGAGCATCGAGAAAAGTGAAAAACAAAAGAA AAGAAATTGTCGTGCAAGAAACGAAAGCGAT back to topprotein sequence of NO09G02920.1 >NO09G02920.1-protein ID=NO09G02920.1-protein|Name=NO09G02920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=565bp MAEYDLTHKIAPFADVHFLVQPDGPFDFLVGQAAYFQIPDVMRAKVALLQ KTKNTDGEVRALEELEEYPSPELEARSKALDDEEEVLREAAGDALDMFSI DDMTKIKEYVTAGATDPPERLECKEKLLAALPAYYDYAKFKYERGEYDDA SIFLNNYIQAIGDRAAFSTVRYSNALWGRLGSAILTQQWHLVKEAVDAID KHIMTVKRREDGVPPTKPTAADPDPIRSMSDREKLQLRTWLLHWCLFAYP ATPEEARKREDAGDKWENILELIFPANDDKQGPGNGPDRYRQALQNNAPW LLRYMTTMVILHKRPVSERFRRKQDVIKEVIWLIEQEAYNYQDPITQFLQ CLYVRFDFDGAQEKLQACYHVLRNDYFLSGWADAFLTEARQLIFETYCRI HQKIDINMLGQKLGMSAAEAEKWIVDLILDSKLVAKIDSRDNYVEMDTHS PSVYQQVLDRTERLASSTFRLGTDTQKIFGQPMGGYPDRRGGGGGGRGGE EGERGDRGDRGGGRGGGRGEERQPSLRAQGLMDGQPSERDERRGVGGHGG GGAGGGRGVRRGGS* back to topmRNA from alignment at chr9:857561..859741+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G02920.1 ID=NO09G02920.1|Name=NO09G02920.1|organism=Nannochloropsis oceanica|type=mRNA|length=2181bp|location=Sequence derived from alignment at chr9:857561..859741+ (Nannochloropsis oceanica) TTATTAACTCAGCGCCTGTCTCACACAACCACCACAGAGCGAGGCGCCGG
CGGGTCTACCGCCCTCATACGAAGCTCTCCCCTCCGCGTCTTTTCCTCCC
TGCTGGACCATCGTCATATTTTCCTCCTCACAACACAACCATGGCGGAGT
ACGATCTCACGCACAAGATTGCACCCTTTGCGGACGTGCATTTCTTGGTG
CAGCCCGACGGTCCCTTTGACTTCTTGGTGGGGCAAGCCGCGTACTTCCA
AATTCCAGACGTCATGCGGGCCAAGGTGGCCTTGCTGCAAAAGACCAAGA
ACACCGACGGCGAAGTCCGTGCTCTGGAAGAACTGGAAGAATACCCTTCC
CCCGAGTTGGAAGCCCGGAGCAAGGCTTTGGATGACGAGGAGGAGGTCCT
GCGCGAAGCGGCGGGGGATGCCTTGGACATGTTTAGCATCGACGATATGA
CCAAAATCAAGGAATATGTCACGGCCGGGGCCACGGACCCCCCCGAGAGG
TTGGAGTGCAAGGAAAAGCTCCTGGCCGCCCTGCCGGCGTACTACGATTA
TGCTAAGTTTAAATACGAGCGAGGTGAATATGACGATGCCTCCATTTTTC
TCAACAACTACATCCAAGCCATCGGGGACCGTGCTGCCTTCTCCACAGTC
CGTTACTCCAATGCCTTGTGGGGACGACTCGGCTCCGCTATCCTCACTCA
ACAATGGCACCTAGTCAAGGAAGCTGTCGATGCGATCGACAAACACATCA
TGACAGTCAAGCGCCGCGAGGATGGCGTCCCCCCCACCAAACCAACCGCC
GCCGACCCCGACCCTATTCGCTCCATGTCTGACCGTGAAAAGCTTCAACT
CCGCACTTGGCTTCTCCACTGGTGCCTCTTCGCCTATCCCGCCACTCCCG
AAGAGGCCCGAAAGCGTGAGGATGCAGGCGACAAGTGGGAGAATATTTTG
GAGCTGATCTTTCCGGCGAACGACGATAAGCAAGGGCCAGGGAATGGCCC
GGATCGTTACAGGCAAGCTTTGCAGAACAATGCACCTTGGCTGCTGCGGT
ACATGACTACTATGGTTATTCTACACAAGCGCCCAGTGAGCGAGCGGTTC
AGGCGCAAGCAGGATGTCATCAAGGAGGTGATTTGGTTGATTGAACAAGA
GGCGTACAACTACCAAGATCCCATCACCCAATTCCTGCAGTGTTTGTATG
TGCGCTTCGACTTCGACGGCGCACAAGAGAAGCTCCAAGCGTGTTACCAC
GTCCTAAGGAATGATTACTTCTTGTCGGGGTGGGCGGACGCGTTTTTGAC
GGAGGCCAGACAGTTGATCTTCGAGACTTATTGCCGCATCCACCAAAAAA
TTGATATCAACATGCTGGGGCAGAAGCTGGGCATGTCCGCCGCCGAGGCC
GAGAAGTGGATCGTGGACCTGATCTTGGACTCTAAGCTTGTAGCGAAGAT
TGATTCGAGGGATAATTACGTGGAGATGGACACGCATTCGCCGTCGGTGT
ATCAGCAGGTGAAGGATCAAGGGCGGGAAGTGAGGGAGTGAGAGCGGACG
GTGTGGCGGGGGGGGAAGGAGAGAGGTCTTCGACTTTTGCCTTGACTGGG
TGGTTAGAAAAGGAATATGTGTCTGATAATATTCTGCTTCTGTATGTCTG
TATGCCTGCCTGATTCTCACATTCTCCCCCTTCCTCACCACGTCCTTTTT
CAAAACAGGTGTTGGACCGCACGGAGCGACTGGCCTCGTCCACCTTCCGC
CTGGGCACGGACACGCAGAAAATCTTTGGGCAGCCCATGGGTGGCTATCC
CGATCGACGGGGTGGTGGAGGTGGAGGTCGAGGAGGGGAGGAGGGCGAGC
GGGGGGACAGGGGGGACCGTGGTGGGGGTCGTGGCGGTGGCCGGGGGGAG
GAGCGGCAGCCGTCGTTGAGGGCGCAAGGGTTGATGGATGGACAGCCGTC
AGAGAGGGACGAAAGGCGAGGAGTTGGCGGGCATGGAGGAGGAGGGGCAG
GGGGAGGGAGGGGTGTGCGAAGAGGCGGGAGTTAAGGATCATTTTGGGGT
GTGTAAGGGGAGGAGAGGCTGTTAGAATGGGGGAGTGGGAGGGAAAGTTA
GATGGGCGGAAGCGTCCGTGGAGCATCGAGAAAAGTGAAAAACAAAAGAA
AAGAAATTGTCGTGCAAGAAACGAAAGCGAT back to topCoding sequence (CDS) from alignment at chr9:857561..859741+ >NO09G02920.1 ID=NO09G02920.1|Name=NO09G02920.1|organism=Nannochloropsis oceanica|type=CDS|length=1695bp|location=Sequence derived from alignment at chr9:857561..859741+ (Nannochloropsis oceanica) ATGGCGGAGTACGATCTCACGCACAAGATTGCACCCTTTGCGGACGTGCA TTTCTTGGTGCAGCCCGACGGTCCCTTTGACTTCTTGGTGGGGCAAGCCG CGTACTTCCAAATTCCAGACGTCATGCGGGCCAAGGTGGCCTTGCTGCAA AAGACCAAGAACACCGACGGCGAAGTCCGTGCTCTGGAAGAACTGGAAGA ATACCCTTCCCCCGAGTTGGAAGCCCGGAGCAAGGCTTTGGATGACGAGG AGGAGGTCCTGCGCGAAGCGGCGGGGGATGCCTTGGACATGTTTAGCATC GACGATATGACCAAAATCAAGGAATATGTCACGGCCGGGGCCACGGACCC CCCCGAGAGGTTGGAGTGCAAGGAAAAGCTCCTGGCCGCCCTGCCGGCGT ACTACGATTATGCTAAGTTTAAATACGAGCGAGGTGAATATGACGATGCC TCCATTTTTCTCAACAACTACATCCAAGCCATCGGGGACCGTGCTGCCTT CTCCACAGTCCGTTACTCCAATGCCTTGTGGGGACGACTCGGCTCCGCTA TCCTCACTCAACAATGGCACCTAGTCAAGGAAGCTGTCGATGCGATCGAC AAACACATCATGACAGTCAAGCGCCGCGAGGATGGCGTCCCCCCCACCAA ACCAACCGCCGCCGACCCCGACCCTATTCGCTCCATGTCTGACCGTGAAA AGCTTCAACTCCGCACTTGGCTTCTCCACTGGTGCCTCTTCGCCTATCCC GCCACTCCCGAAGAGGCCCGAAAGCGTGAGGATGCAGGCGACAAGTGGGA GAATATTTTGGAGCTGATCTTTCCGGCGAACGACGATAAGCAAGGGCCAG GGAATGGCCCGGATCGTTACAGGCAAGCTTTGCAGAACAATGCACCTTGG CTGCTGCGGTACATGACTACTATGGTTATTCTACACAAGCGCCCAGTGAG CGAGCGGTTCAGGCGCAAGCAGGATGTCATCAAGGAGGTGATTTGGTTGA TTGAACAAGAGGCGTACAACTACCAAGATCCCATCACCCAATTCCTGCAG TGTTTGTATGTGCGCTTCGACTTCGACGGCGCACAAGAGAAGCTCCAAGC GTGTTACCACGTCCTAAGGAATGATTACTTCTTGTCGGGGTGGGCGGACG CGTTTTTGACGGAGGCCAGACAGTTGATCTTCGAGACTTATTGCCGCATC CACCAAAAAATTGATATCAACATGCTGGGGCAGAAGCTGGGCATGTCCGC CGCCGAGGCCGAGAAGTGGATCGTGGACCTGATCTTGGACTCTAAGCTTG TAGCGAAGATTGATTCGAGGGATAATTACGTGGAGATGGACACGCATTCG CCGTCGGTGTATCAGCAGGTGTTGGACCGCACGGAGCGACTGGCCTCGTC CACCTTCCGCCTGGGCACGGACACGCAGAAAATCTTTGGGCAGCCCATGG GTGGCTATCCCGATCGACGGGGTGGTGGAGGTGGAGGTCGAGGAGGGGAG GAGGGCGAGCGGGGGGACAGGGGGGACCGTGGTGGGGGTCGTGGCGGTGG CCGGGGGGAGGAGCGGCAGCCGTCGTTGAGGGCGCAAGGGTTGATGGATG GACAGCCGTCAGAGAGGGACGAAAGGCGAGGAGTTGGCGGGCATGGAGGA GGAGGGGCAGGGGGAGGGAGGGGTGTGCGAAGAGGCGGGAGTTAA back to top
|