NO09G02920.1, NO09G02920.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02920.1
Unique NameNO09G02920.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1981
Alignment locationchr9:857561..859741 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:857561..859741 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G02920.1 vs.
Match: EWM27525.1 (eukaryotic translation initiation factor 3 subunit e [Nannochloropsis gaditana])

HSP 1 Score: 881.3 bits (2276), Expect = 1.600e-252
Identity = 434/498 (87.15%), Postives = 461/498 (92.57%), Query Frame = 0
Query:    1 MAEYDLTHKIAPFADVHFLVQPDGPFDFLVGQAAYFQIPDVMRAKVALLQKTKNTDGEVRALEELEEYPSPELEARSKALDDEEEVLREAAGDALDMFSIDDMTKIKEYVTAGATDPPERLECKEKLLAALPAYYDYAKFKYERGEYDDASIFLNNYIQAIGDRAAFSTVRYSNALWGRLGSAILTQQWHLVKEAVDAIDKHIMTVKRREDGVPPTKPTAADPDPIRSMSDREKLQLRTWLLHWCLFAYPATPEEARKREDAGDKWENILELIFPANDDKQGPGNGPDRYRQALQNNAPWLLRYMTTMVILHKRPVSERFRRKQDVIKEVIWLIEQEAYNYQDPITQFLQCLYVRFDFDGAQEKLQACYHVLRNDYFLSGWADAFLTEARQLIFETYCRIHQKIDINMLGQKLGMSAAEAEKWIVDLILDSKLVAKIDSRDNYVEMDTHSPSVYQQVLDRTERLASSTFRLGTDTQKIFGQPMGGYPDRRGGGGGGRG 499
            MAEYDLT KIAPF DVHFLVQ DGP DFL+ QA Y+   DVMRAK+ALL KTKN DG++RALEEL+E   PELEA+ +A D+ EEVLREAAGDALDMFS++DMT IKEYVTAGATDP E+LE KEKLLAALPAYYDYAKFKYERGEYDDA +FLNNYIQAIGDRAAFSTVRYS+ALWGRLG+ ILTQQWHLVK+AV+AIDKHIMTVKRREDGVPPT P+ +DPDPIRSMSDREKLQLRTW+LHWCLFAYP TP+EARKRE AGDKWENILELIFP ND+KQGPGNGPDRYRQA+QNNAPWLLRY+TTMVILHKRP+SERFRRKQDVIKEVIWLIEQEAY YQDPITQFLQCLYVRFDFDGAQEKLQACYHVLRNDYFLSGWADAFL EARQLIFETYCRIHQKIDINMLGQKLGMS AEAEKWIVDLILDSKLVAKIDSRDNYVEM+T SPSVY QVLDRTERLASSTFRLGTDTQKIFGQ +GGYPD RG  GG RG
Sbjct:    1 MAEYDLTQKIAPFTDVHFLVQSDGPLDFLIEQAEYYSYDDVMRAKLALLAKTKNVDGQLRALEELQEDIPPELEAQQQANDEREEVLREAAGDALDMFSLEDMTTIKEYVTAGATDPAEKLEMKEKLLAALPAYYDYAKFKYERGEYDDAYLFLNNYIQAIGDRAAFSTVRYSHALWGRLGAVILTQQWHLVKDAVEAIDKHIMTVKRREDGVPPTMPSPSDPDPIRSMSDREKLQLRTWVLHWCLFAYPVTPDEARKRESAGDKWENILELIFPVNDEKQGPGNGPDRYRQAVQNNAPWLLRYVTTMVILHKRPMSERFRRKQDVIKEVIWLIEQEAYTYQDPITQFLQCLYVRFDFDGAQEKLQACYHVLRNDYFLSGWADAFLVEARQLIFETYCRIHQKIDINMLGQKLGMSPAEAEKWIVDLILDSKLVAKIDSRDNYVEMNTRSPSVYHQVLDRTERLASSTFRLGTDTQKIFGQTLGGYPD-RGATGGRRG 497          
The following BLAST results are available for this feature:
BLAST of NO09G02920.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27525.11.600e-25287.15eukaryotic translation initiation factor 3 subunit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02920NO09G02920Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02920.1NO09G02920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02920.1.cds1NO09G02920.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G02920.1.cds2NO09G02920.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02920.1 ID=NO09G02920.1|Name=NO09G02920.1|organism=Nannochloropsis oceanica|type=mRNA|length=1981bp
TTATTAACTCAGCGCCTGTCTCACACAACCACCACAGAGCGAGGCGCCGG
CGGGTCTACCGCCCTCATACGAAGCTCTCCCCTCCGCGTCTTTTCCTCCC
TGCTGGACCATCGTCATATTTTCCTCCTCACAACACAACCATGGCGGAGT
ACGATCTCACGCACAAGATTGCACCCTTTGCGGACGTGCATTTCTTGGTG
CAGCCCGACGGTCCCTTTGACTTCTTGGTGGGGCAAGCCGCGTACTTCCA
AATTCCAGACGTCATGCGGGCCAAGGTGGCCTTGCTGCAAAAGACCAAGA
ACACCGACGGCGAAGTCCGTGCTCTGGAAGAACTGGAAGAATACCCTTCC
CCCGAGTTGGAAGCCCGGAGCAAGGCTTTGGATGACGAGGAGGAGGTCCT
GCGCGAAGCGGCGGGGGATGCCTTGGACATGTTTAGCATCGACGATATGA
CCAAAATCAAGGAATATGTCACGGCCGGGGCCACGGACCCCCCCGAGAGG
TTGGAGTGCAAGGAAAAGCTCCTGGCCGCCCTGCCGGCGTACTACGATTA
TGCTAAGTTTAAATACGAGCGAGGTGAATATGACGATGCCTCCATTTTTC
TCAACAACTACATCCAAGCCATCGGGGACCGTGCTGCCTTCTCCACAGTC
CGTTACTCCAATGCCTTGTGGGGACGACTCGGCTCCGCTATCCTCACTCA
ACAATGGCACCTAGTCAAGGAAGCTGTCGATGCGATCGACAAACACATCA
TGACAGTCAAGCGCCGCGAGGATGGCGTCCCCCCCACCAAACCAACCGCC
GCCGACCCCGACCCTATTCGCTCCATGTCTGACCGTGAAAAGCTTCAACT
CCGCACTTGGCTTCTCCACTGGTGCCTCTTCGCCTATCCCGCCACTCCCG
AAGAGGCCCGAAAGCGTGAGGATGCAGGCGACAAGTGGGAGAATATTTTG
GAGCTGATCTTTCCGGCGAACGACGATAAGCAAGGGCCAGGGAATGGCCC
GGATCGTTACAGGCAAGCTTTGCAGAACAATGCACCTTGGCTGCTGCGGT
ACATGACTACTATGGTTATTCTACACAAGCGCCCAGTGAGCGAGCGGTTC
AGGCGCAAGCAGGATGTCATCAAGGAGGTGATTTGGTTGATTGAACAAGA
GGCGTACAACTACCAAGATCCCATCACCCAATTCCTGCAGTGTTTGTATG
TGCGCTTCGACTTCGACGGCGCACAAGAGAAGCTCCAAGCGTGTTACCAC
GTCCTAAGGAATGATTACTTCTTGTCGGGGTGGGCGGACGCGTTTTTGAC
GGAGGCCAGACAGTTGATCTTCGAGACTTATTGCCGCATCCACCAAAAAA
TTGATATCAACATGCTGGGGCAGAAGCTGGGCATGTCCGCCGCCGAGGCC
GAGAAGTGGATCGTGGACCTGATCTTGGACTCTAAGCTTGTAGCGAAGAT
TGATTCGAGGGATAATTACGTGGAGATGGACACGCATTCGCCGTCGGTGT
ATCAGCAGGTGTTGGACCGCACGGAGCGACTGGCCTCGTCCACCTTCCGC
CTGGGCACGGACACGCAGAAAATCTTTGGGCAGCCCATGGGTGGCTATCC
CGATCGACGGGGTGGTGGAGGTGGAGGTCGAGGAGGGGAGGAGGGCGAGC
GGGGGGACAGGGGGGACCGTGGTGGGGGTCGTGGCGGTGGCCGGGGGGAG
GAGCGGCAGCCGTCGTTGAGGGCGCAAGGGTTGATGGATGGACAGCCGTC
AGAGAGGGACGAAAGGCGAGGAGTTGGCGGGCATGGAGGAGGAGGGGCAG
GGGGAGGGAGGGGTGTGCGAAGAGGCGGGAGTTAAGGATCATTTTGGGGT
GTGTAAGGGGAGGAGAGGCTGTTAGAATGGGGGAGTGGGAGGGAAAGTTA
GATGGGCGGAAGCGTCCGTGGAGCATCGAGAAAAGTGAAAAACAAAAGAA
AAGAAATTGTCGTGCAAGAAACGAAAGCGAT
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protein sequence of NO09G02920.1

>NO09G02920.1-protein ID=NO09G02920.1-protein|Name=NO09G02920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=565bp
MAEYDLTHKIAPFADVHFLVQPDGPFDFLVGQAAYFQIPDVMRAKVALLQ
KTKNTDGEVRALEELEEYPSPELEARSKALDDEEEVLREAAGDALDMFSI
DDMTKIKEYVTAGATDPPERLECKEKLLAALPAYYDYAKFKYERGEYDDA
SIFLNNYIQAIGDRAAFSTVRYSNALWGRLGSAILTQQWHLVKEAVDAID
KHIMTVKRREDGVPPTKPTAADPDPIRSMSDREKLQLRTWLLHWCLFAYP
ATPEEARKREDAGDKWENILELIFPANDDKQGPGNGPDRYRQALQNNAPW
LLRYMTTMVILHKRPVSERFRRKQDVIKEVIWLIEQEAYNYQDPITQFLQ
CLYVRFDFDGAQEKLQACYHVLRNDYFLSGWADAFLTEARQLIFETYCRI
HQKIDINMLGQKLGMSAAEAEKWIVDLILDSKLVAKIDSRDNYVEMDTHS
PSVYQQVLDRTERLASSTFRLGTDTQKIFGQPMGGYPDRRGGGGGGRGGE
EGERGDRGDRGGGRGGGRGEERQPSLRAQGLMDGQPSERDERRGVGGHGG
GGAGGGRGVRRGGS*
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mRNA from alignment at chr9:857561..859741+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02920.1 ID=NO09G02920.1|Name=NO09G02920.1|organism=Nannochloropsis oceanica|type=mRNA|length=2181bp|location=Sequence derived from alignment at chr9:857561..859741+ (Nannochloropsis oceanica)
TTATTAACTCAGCGCCTGTCTCACACAACCACCACAGAGCGAGGCGCCGG CGGGTCTACCGCCCTCATACGAAGCTCTCCCCTCCGCGTCTTTTCCTCCC TGCTGGACCATCGTCATATTTTCCTCCTCACAACACAACCATGGCGGAGT ACGATCTCACGCACAAGATTGCACCCTTTGCGGACGTGCATTTCTTGGTG CAGCCCGACGGTCCCTTTGACTTCTTGGTGGGGCAAGCCGCGTACTTCCA AATTCCAGACGTCATGCGGGCCAAGGTGGCCTTGCTGCAAAAGACCAAGA ACACCGACGGCGAAGTCCGTGCTCTGGAAGAACTGGAAGAATACCCTTCC CCCGAGTTGGAAGCCCGGAGCAAGGCTTTGGATGACGAGGAGGAGGTCCT GCGCGAAGCGGCGGGGGATGCCTTGGACATGTTTAGCATCGACGATATGA CCAAAATCAAGGAATATGTCACGGCCGGGGCCACGGACCCCCCCGAGAGG TTGGAGTGCAAGGAAAAGCTCCTGGCCGCCCTGCCGGCGTACTACGATTA TGCTAAGTTTAAATACGAGCGAGGTGAATATGACGATGCCTCCATTTTTC TCAACAACTACATCCAAGCCATCGGGGACCGTGCTGCCTTCTCCACAGTC CGTTACTCCAATGCCTTGTGGGGACGACTCGGCTCCGCTATCCTCACTCA ACAATGGCACCTAGTCAAGGAAGCTGTCGATGCGATCGACAAACACATCA TGACAGTCAAGCGCCGCGAGGATGGCGTCCCCCCCACCAAACCAACCGCC GCCGACCCCGACCCTATTCGCTCCATGTCTGACCGTGAAAAGCTTCAACT CCGCACTTGGCTTCTCCACTGGTGCCTCTTCGCCTATCCCGCCACTCCCG AAGAGGCCCGAAAGCGTGAGGATGCAGGCGACAAGTGGGAGAATATTTTG GAGCTGATCTTTCCGGCGAACGACGATAAGCAAGGGCCAGGGAATGGCCC GGATCGTTACAGGCAAGCTTTGCAGAACAATGCACCTTGGCTGCTGCGGT ACATGACTACTATGGTTATTCTACACAAGCGCCCAGTGAGCGAGCGGTTC AGGCGCAAGCAGGATGTCATCAAGGAGGTGATTTGGTTGATTGAACAAGA GGCGTACAACTACCAAGATCCCATCACCCAATTCCTGCAGTGTTTGTATG TGCGCTTCGACTTCGACGGCGCACAAGAGAAGCTCCAAGCGTGTTACCAC GTCCTAAGGAATGATTACTTCTTGTCGGGGTGGGCGGACGCGTTTTTGAC GGAGGCCAGACAGTTGATCTTCGAGACTTATTGCCGCATCCACCAAAAAA TTGATATCAACATGCTGGGGCAGAAGCTGGGCATGTCCGCCGCCGAGGCC GAGAAGTGGATCGTGGACCTGATCTTGGACTCTAAGCTTGTAGCGAAGAT TGATTCGAGGGATAATTACGTGGAGATGGACACGCATTCGCCGTCGGTGT ATCAGCAGGTGAAGGATCAAGGGCGGGAAGTGAGGGAGTGAGAGCGGACG GTGTGGCGGGGGGGGAAGGAGAGAGGTCTTCGACTTTTGCCTTGACTGGG TGGTTAGAAAAGGAATATGTGTCTGATAATATTCTGCTTCTGTATGTCTG TATGCCTGCCTGATTCTCACATTCTCCCCCTTCCTCACCACGTCCTTTTT CAAAACAGGTGTTGGACCGCACGGAGCGACTGGCCTCGTCCACCTTCCGC CTGGGCACGGACACGCAGAAAATCTTTGGGCAGCCCATGGGTGGCTATCC CGATCGACGGGGTGGTGGAGGTGGAGGTCGAGGAGGGGAGGAGGGCGAGC GGGGGGACAGGGGGGACCGTGGTGGGGGTCGTGGCGGTGGCCGGGGGGAG GAGCGGCAGCCGTCGTTGAGGGCGCAAGGGTTGATGGATGGACAGCCGTC AGAGAGGGACGAAAGGCGAGGAGTTGGCGGGCATGGAGGAGGAGGGGCAG GGGGAGGGAGGGGTGTGCGAAGAGGCGGGAGTTAAGGATCATTTTGGGGT GTGTAAGGGGAGGAGAGGCTGTTAGAATGGGGGAGTGGGAGGGAAAGTTA GATGGGCGGAAGCGTCCGTGGAGCATCGAGAAAAGTGAAAAACAAAAGAA AAGAAATTGTCGTGCAAGAAACGAAAGCGAT
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Coding sequence (CDS) from alignment at chr9:857561..859741+

>NO09G02920.1 ID=NO09G02920.1|Name=NO09G02920.1|organism=Nannochloropsis oceanica|type=CDS|length=1695bp|location=Sequence derived from alignment at chr9:857561..859741+ (Nannochloropsis oceanica)
ATGGCGGAGTACGATCTCACGCACAAGATTGCACCCTTTGCGGACGTGCA
TTTCTTGGTGCAGCCCGACGGTCCCTTTGACTTCTTGGTGGGGCAAGCCG
CGTACTTCCAAATTCCAGACGTCATGCGGGCCAAGGTGGCCTTGCTGCAA
AAGACCAAGAACACCGACGGCGAAGTCCGTGCTCTGGAAGAACTGGAAGA
ATACCCTTCCCCCGAGTTGGAAGCCCGGAGCAAGGCTTTGGATGACGAGG
AGGAGGTCCTGCGCGAAGCGGCGGGGGATGCCTTGGACATGTTTAGCATC
GACGATATGACCAAAATCAAGGAATATGTCACGGCCGGGGCCACGGACCC
CCCCGAGAGGTTGGAGTGCAAGGAAAAGCTCCTGGCCGCCCTGCCGGCGT
ACTACGATTATGCTAAGTTTAAATACGAGCGAGGTGAATATGACGATGCC
TCCATTTTTCTCAACAACTACATCCAAGCCATCGGGGACCGTGCTGCCTT
CTCCACAGTCCGTTACTCCAATGCCTTGTGGGGACGACTCGGCTCCGCTA
TCCTCACTCAACAATGGCACCTAGTCAAGGAAGCTGTCGATGCGATCGAC
AAACACATCATGACAGTCAAGCGCCGCGAGGATGGCGTCCCCCCCACCAA
ACCAACCGCCGCCGACCCCGACCCTATTCGCTCCATGTCTGACCGTGAAA
AGCTTCAACTCCGCACTTGGCTTCTCCACTGGTGCCTCTTCGCCTATCCC
GCCACTCCCGAAGAGGCCCGAAAGCGTGAGGATGCAGGCGACAAGTGGGA
GAATATTTTGGAGCTGATCTTTCCGGCGAACGACGATAAGCAAGGGCCAG
GGAATGGCCCGGATCGTTACAGGCAAGCTTTGCAGAACAATGCACCTTGG
CTGCTGCGGTACATGACTACTATGGTTATTCTACACAAGCGCCCAGTGAG
CGAGCGGTTCAGGCGCAAGCAGGATGTCATCAAGGAGGTGATTTGGTTGA
TTGAACAAGAGGCGTACAACTACCAAGATCCCATCACCCAATTCCTGCAG
TGTTTGTATGTGCGCTTCGACTTCGACGGCGCACAAGAGAAGCTCCAAGC
GTGTTACCACGTCCTAAGGAATGATTACTTCTTGTCGGGGTGGGCGGACG
CGTTTTTGACGGAGGCCAGACAGTTGATCTTCGAGACTTATTGCCGCATC
CACCAAAAAATTGATATCAACATGCTGGGGCAGAAGCTGGGCATGTCCGC
CGCCGAGGCCGAGAAGTGGATCGTGGACCTGATCTTGGACTCTAAGCTTG
TAGCGAAGATTGATTCGAGGGATAATTACGTGGAGATGGACACGCATTCG
CCGTCGGTGTATCAGCAGGTGTTGGACCGCACGGAGCGACTGGCCTCGTC
CACCTTCCGCCTGGGCACGGACACGCAGAAAATCTTTGGGCAGCCCATGG
GTGGCTATCCCGATCGACGGGGTGGTGGAGGTGGAGGTCGAGGAGGGGAG
GAGGGCGAGCGGGGGGACAGGGGGGACCGTGGTGGGGGTCGTGGCGGTGG
CCGGGGGGAGGAGCGGCAGCCGTCGTTGAGGGCGCAAGGGTTGATGGATG
GACAGCCGTCAGAGAGGGACGAAAGGCGAGGAGTTGGCGGGCATGGAGGA
GGAGGGGCAGGGGGAGGGAGGGGTGTGCGAAGAGGCGGGAGTTAA
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Synonyms
Publications