NO09G02500, NO09G02500 (gene) Nannochloropsis oceanica

Overview
NameNO09G02500
Unique NameNO09G02500
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2451
Alignment locationchr9:746772..749222 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:746772..749222 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010828Alc_AcTrfase
Homology
BLAST of NO09G02500 vs. NCBI_GenBank
Match: XP_002185765.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >ACI65235.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 112.5 bits (280), Expect = 5.600e-21
Identity = 176/738 (23.85%), Postives = 284/738 (38.48%), Query Frame = 0
Query:   16 LLVHFLAVCTHAFQSLRALKCPLVTQLSNAHSSS----------WSSTDTET---RPERETVIKSASSQPSQAPQTPPKRQPWRRLGSFETLLARKAAAGPQRLSI-----PHVCVAVVDDEQGLLNARLLKPALVSLVRRHPKLRACIQGTGKVEGAPVAGVRRGGREVDPLMWWPCAMTPEEVVEEALSFDDGSSSSSINDDAQDSPFFFSVSFQAALDNTD-MDSSRGPLWRLHVMRSQGSRKGTKPAGPGGVGQVALLFIFNHAISDQVSCNTLIHELLSTLGEXXXXXXXXXXXXXXXXXQPFPPSIEKAILGPARA-------TVSFTTALYAARECLFGLLPTTLYPTXXXXXXXXXXXXXXXTIP------PPLPAANRRTICVFRREEPSRLSLLKEECKKRGVTVTAALSAAMLYATSDLAHGEEEEGRAEGVRNGKEHNYRFLLSLNMRTFSRRKLGGGTEGGEGEKEKXXXXXXGEEDWEENAVASAAGAMDFMV-RLQERQGRNLLCTHKSTTSKNGTVAATAATAPGAPRPHVAGEEAFWLLAKQCRREFLDFVSAGFVPESVNLFDWGMQTLELNEVVEKEAENPKTLGRAYTCGVSNMGVFEDGMGGGRRRGSNRSSNGSRGMDEDFSLSSSAFSSCLPSYGSLRLHGIHYATSHSLTGSLYQLSCGTVNGALCLTFHYPWPLVDREMANRFADRVVQILRCIGWGERTEGGREGGRDREEE 721
            LL++      HAF     L    +TQ SN   +S          ++S   ET   RP   T   +A++   Q      ++   R LGS E L+  +   GP+R  +      HV  A++       +  +L+ AL + ++ HP L   + G G+ +      + +  R+ +P    PC    E  +  AL         S + +A D    +  SF   LD+    D+++GPLW++ + R+  S            G  ALLF FNHAISDQ S N L+ ++L  + E                 Q  P ++E +++G +R         V   T  Y   +   GL    + P                 I           + +RR+   FR       S L  +C++ GV+++ AL+AA     +D+           G    K  NY+ L SL+MR +       G +  +GE                 +VA  AG+MD M+  L +R GR L  T+   T +  T+                    FW LA++                                 +   AE+    GRAY+ G++N+GV+E      R                   +  S  +  L  +G  ++  I +AT+H+ +G LY  SC TV+G+L +TF+   P+V  +    FAD  V++L  +       G  +G   ++EE
Sbjct:   15 LLLYLATSIGHAFAPRSVLTLRRITQPSNPRQASSTDADDGGMFFASASDETLLARPGNATNDDAATADAGQVNNQSSRQS--RVLGSQELLMLPR-QYGPKRDKVIFPQMNHVSCAIL---SATPSDTVLQKALDAAMQAHPLLHCRVDGDGEPDKR--IDLFQMVRQGEPN---PCTFVSEPNLFSALDVLKVIDVPSTDREALDQS--WQKSFNKNLDDGSWCDAAKGPLWKVELHRTASSS-----------GPCALLFSFNHAISDQSSANRLLDQILRNVAE-----LESLGSTTPAIPQTMPLALEDSVMGVSRRWSDVQMDGVGTDTIRYVVNKAAEGLRNPVIVPDSAGRKEGSNPLNALTIISGRAAGGQDNESQSRRSTLQFRSLSRESTSALLAKCRENGVSISNALTAAAALTATDVID--------NGKPKRKSRNYKVLQSLDMRRY-------GAKLDQGE-----------------SVACMAGSMDLMLGPLADRSGRTLKQTY---TPEAATI--------------------FWNLARE---------------------------------IHLTAESKDNKGRAYSAGITNVGVYESQEAFAR-------------------IDQSEPAVLLVEHGKYKIQDIFFATTHTRSGCLYPASCITVDGSLKMTFNPVAPIVSDKTNANFADGFVELLEIVA------GVSQGTIKKDEE 610          
BLAST of NO09G02500 vs. NCBI_GenBank
Match: EJK59913.1 (hypothetical protein THAOC_19818 [Thalassiosira oceanica])

HSP 1 Score: 107.8 bits (268), Expect = 1.400e-19
Identity = 131/511 (25.64%), Postives = 193/511 (37.77%), Query Frame = 0
Query:  107 SIPHVCVAVVDDEQGLLNARLLKPALVSLVRRHPKLRACIQGTGKVEGA--PVAGVRRGGREVDPLMWWPCAMTPEEVVEEALSFDDGSSSSSINDDAQDSPFFFSVSFQAALDNTDM--DSSRGPLWRLHVMRSQGSRKGTKPAGPGGVGQVALLFIFNHAISDQVSCNTLIHELLSTLGEXXXXXXXXXXXXXXXXXQPFPPSIEKAILG-------PARATVSFTTALYAARECLFGLL-PTTLYPTXXXXXXXXXXXXXXXTIPPPLPA----ANRRTICVFRREEPSRLSLLKEECKKRGVTVTAALSAAMLYATSDLAHGEEEEGRAEGVRNGKEHNYRFLLSLNMRTFSRRKLGGGTEGGEGEKEKXXXXXXGEEDWEENAVASAAGAMDFMV-RLQERQGRNLLCTHKSTTSKNGTVAATAATAPGAPRPHVAGEEAFWLLAKQCRREFLDFVSAGFVPESVNLFDWGMQTLELNEVVEKEAENPKTLGRAYTCGVSNMGVFE 601
            S+ HV V  +     +     L  A+   +  HP LR  ++G G+ +        VRRG          PC               D     +I  D +D    +  +F   +D+      +S GPLW+L + R       +           ALLF  NHAISDQ S N L+ +++S +                   Q  P ++E ++LG            +   T  Y A +   G   P  L  T               TI            RRT   FR       S L + C+  GV+VT AL+AAM    +D   G  E       + GK+ NY+ L SL+MR F                        GE+  +   VA  AG+ D M+  L +R G        S  S+                      + FW LAK+ + +  DFV +G    +V +FD+ M   ++N +V+  A++  +LGRAY+ GVSN GV+E
Sbjct:  108 SMSHVTVTTLSATPSI---EALSDAIEIAMDTHPLLRCHVEGDGEPDERIDLFKMVRRGEPN-------PCTFVAPNA--NPFKATDVLEVVNIEGDDEDLRRSWQENFNNGIDDGSWYESASIGPLWKLTLHRLGNETSSSD-------SPCALLFSSNHAISDQGSVNVLMDQIISDVAS----IESDGGVSNKPTVQGMPMAMEDSVLGLNNRWSDVQTGGIEVDTIKYVAGKAAEGFRGPVILPDTDEEASGGDSLAGALSTISGKSAGGESKVQRRTTLQFRNLSEQTTSKLLQSCRANGVSVTNALTAAMSLTATDFIDGGCE-------KEGKKRNYKVLQSLDMRRF------------------------GEQLDKCETVACMAGSNDLMLGPLPDRSGEAFREEPDSAESR----------------------QLFWNLAKESKSQTEDFVDSGGPTHAVRVFDFAMSISDMNNLVDLTAKSNDSLGRAYSAGVSNNGVYE 542          
BLAST of NO09G02500 vs. NCBI_GenBank
Match: OEU18046.1 (hypothetical protein FRACYDRAFT_183807 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 97.4 bits (241), Expect = 1.900e-16
Identity = 160/675 (23.70%), Postives = 250/675 (37.04%), Query Frame = 0
Query:   62 ETVIKSASSQPSQAPQTPPKRQPWRRLGSFETLLARKAAAGPQRLSIP---HVCVAVVDDEQGLLNARLLKPALVSLVRRHPKLRACIQGTGKVEGA--PVAGVRRGGREVDPLMWWPCAMTPEEVVEEALSFDDGSSSSSINDDAQDSPFFFSVSFQAALDN----TDMDSSRGPLWRLHVMR-SQGSRKGTKPAGPGGVGQVALLFIFNHAISDQVSCNTLIHELLSTLGE---------XXXXXXXXXXXXXXXXXQPFPPSIEKAILG-------PARATVSFTTALYAARECLFG-----LLPTTLYPTXXXXXXXXXXXXXXXTI-------PPPLPAANRRTICVFRREEPSRLSLLKEECKKRGVTVTAALSAAMLYATSDLAHGEEEEGRAEGVRNGKEHNYRFLLSLNMRTFSRRKLGGGTEGGEGEKEKXXXXXXGEEDWEENAVASAAGAMDFMVRLQERQGRNLLCTHKSTTSKNGTVAATAATAPGAPRPHVAGEEAFWLLAKQCRREFLDFVSAGFVPESVNLFDWGMQTLELNEVVEKEAENPKTLGRAYTCGVSNMGVFEDGMGGGRRRGSNRSSNGSRGMDEDFSLSSSAFSSCLPSYGSLRLHGIHYATSHSLTGSLYQLSCGTVNGALCLTFHYPWPLVDREMANRFADRVVQIL 699
            +T + ++S++  +  +     +  R LGS E L           +  P   H+ VA++   Q + +   L  A+   ++ HP LR  + G G+ +        VR+G          PC  T   +   A        SS+   + + S   +  SFQ  LDN     D+  S  PLW+L + R + GS             + ALLF FNHAISDQ S   L  ++L+ + +         XXXXXXXXXXXX     Q  PPS+E+++LG         +  ++  T  Y A + L       +LP     T               TI            + NR+++  FR         L ++C+   V++T ALSAA+                          NY+ L SL+MR +                        GE   +  +V   AG+MD M              H       GT   T                                         V +FD+ M   +LN +V   A++  +LGRAY+ G +N G++E        R ++                          +G   ++ I+YA S++ +GSLY+ S  TV   +  TFH   P+V+      FAD ++++L
Sbjct:    5 DTTLPTSSTKKQKDSEEQNPLRLKRELGSQENLXXXXXXXXXXDVVFPSMNHISVALISGSQ-IPSENALNYAINLCMQSHPLLRCYVDGNGEPDERIDLFQMVRKGDNN-------PCIFTATNMKYTAKDVLKMMPSSTSFQEFESS---WQSSFQNDLDNGASWCDVKDSTTPLWKLELHRFNTGSXXXXXXXXXXXDNKAALLFSFNHAISDQSSACRLTDQILALVVDXXXXXXXXXXXXXXXXXXXXXKIPKSQSIPPSVEESVLGLKKRFKDVGKEDITLNTIKYVAGKALEEIKGPVILPDDFKTTTSKEGGGSGFTGALTTISGNAAGGDADKDSLNRKSVLAFRTLSKDTTDALLKKCRANNVSITNALSAALXXXXXXXXXXXXXXXXXXXXXXXXXRNYKILQSLDMRRY------------------------GECLDQGKSVGCLAGSMDLM--------------HGPLNDNTGTAIRT---------------------------------------RQVRVFDFAMTISDLNNLVHLTAQSKDSLGRAYSGGFTNAGIYE--------RLTSFEXXXXXXXXXXXXXXXXXXXXXXXXHGKYTINDIYYAASNARSGSLYRFSVITVGNEMKFTFHPASPIVNDSTNEEFADALIELL 583          
The following BLAST results are available for this feature:
BLAST of NO09G02500 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 13
Match NameE-valueIdentityDescription
XP_002185765.15.600e-2123.85predicted protein [Phaeodactylum tricornutum CCAP ... [more]
EJK59913.11.400e-1925.64hypothetical protein THAOC_19818 [Thalassiosira oc... [more]
OEU18046.11.900e-1623.70hypothetical protein FRACYDRAFT_183807 [Fragilario... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL122nonsL122Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR129ngnoR129Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010777NSK010777Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G02500.1NO09G02500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|20275gene_4297Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100015g20gene3017Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G02500.1NO09G02500.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G02500 ID=NO09G02500|Name=NO09G02500|organism=Nannochloropsis oceanica|type=gene|length=2451bp
ACAGATACAGGCAGAGTATCCTAGCTAGCTGGTCTGCGCGGTGGTGGTAC
ATGCCGGGCTGAGACCCGCCCGTCGCGATGAGGCAGTCCTCCAAGCATGC
CTCAACCATCCTGCCCCTTCTCCTCCTCGTCCACTTCCTGGCAGTCTGCA
CGCATGCCTTCCAGTCCCTTCGCGCACTGAAGTGTCCGCTCGTCACGCAG
CTGTCAAATGCCCATTCCTCTTCGTGGTCCTCCACTGACACGGAAACTCG
GCCAGAGCGAGAGACAGTGATCAAGTCCGCCTCATCCCAACCATCACAAG
CACCCCAAACCCCCCCAAAACGCCAGCCCTGGCGCCGTCTGGGCAGCTTT
GAGACATTGTTGGCCCGGAAAGCAGCAGCAGGACCGCAGCGGTTGTCCAT
ACCTCATGTCTGTGTGGCCGTTGTCGATGATGAACAAGGACTGTTGAATG
CTCGGCTGCTTAAGCCAGCGTTAGTCTCGCTCGTGCGGCGCCATCCCAAG
CTGCGAGCCTGCATTCAGGGCACGGGCAAGGTGGAGGGAGCGCCTGTGGC
CGGGGTGCGACGAGGAGGAAGAGAAGTCGACCCCTTGATGTGGTGGCCAT
GTGCGATGACACCTGAAGAGGTGGTAGAAGAAGCGTTGTCATTCGACGAC
GGCAGCAGTAGCAGCAGCATTAATGACGATGCGCAGGACTCTCCTTTCTT
CTTCTCTGTATCCTTTCAAGCGGCTTTGGACAATACGGACATGGATTCGA
GTCGTGGACCTCTGTGGCGACTGCATGTAATGCGCTCTCAAGGGAGCAGA
AAAGGCACCAAACCTGCAGGGCCAGGAGGAGTAGGGCAGGTTGCTTTGCT
CTTCATTTTCAACCACGCCATAAGCGACCAAGTCTCCTGCAACACGCTCA
TCCATGAGCTACTGTCGACGCTCGGAGAGACCTCATCCTCATCCTCATCC
TCATCCTCATCCTCCTCCTCCATCGCTTCCCAGCCTTTCCCCCCCTCCAT
CGAAAAGGCCATCCTGGGTCCCGCCCGAGCCACGGTCAGTTTCACAACTG
CCCTCTACGCCGCCCGCGAATGTCTTTTCGGCCTTCTCCCCACCACTCTC
TACCCTACGCCTACAGCAACAGCAGCAGCGACAGGGACCGCGACAGCACT
AGACACCATCCCTCCTCCCCTCCCTGCAGCGAACCGAAGGACCATATGTG
TATTTCGTCGTGAGGAACCCTCCAGGCTGTCCCTCTTGAAGGAAGAGTGT
AAGAAGAGGGGGGTGACAGTGACAGCTGCCTTGTCTGCGGCCATGCTGTA
TGCCACCAGTGATCTGGCGCATGGAGAGGAAGAGGAAGGGAGGGCTGAAG
GGGTACGAAACGGAAAAGAGCACAATTATCGTTTTTTGCTGTCCTTGAAC
ATGCGCACATTTTCTCGCCGTAAGCTTGGGGGAGGAACGGAGGGAGGGGA
GGGAGAAAAGGAGAAAGGGAAGGATGACAAGGAGGGGGAGGAGGACTGGG
AAGAGAATGCAGTGGCATCAGCAGCCGGTGCAATGGACTTTATGGTCCGC
TTGCAGGAAAGGCAAGGCAGAAACCTCCTCTGTACTCACAAATCAACGAC
AAGCAAGAACGGAACGGTAGCCGCAACTGCTGCAACAGCACCAGGAGCAC
CAAGACCACATGTAGCTGGAGAGGAAGCATTTTGGCTCCTGGCTAAACAA
TGCCGTCGTGAGTTTCTAGATTTTGTCTCGGCCGGTTTCGTCCCCGAATC
CGTTAATTTGTTTGATTGGGGTATGCAGACATTGGAATTGAATGAGGTAG
TGGAGAAGGAGGCCGAAAACCCTAAGACTCTGGGAAGGGCGTATACTTGT
GGAGTGTCGAACATGGGAGTGTTTGAAGATGGGATGGGAGGAGGGAGGCG
CAGAGGCAGCAATCGCAGCAGCAACGGCAGCCGAGGGATGGACGAAGATT
TCTCTCTCTCTTCTTCAGCCTTTTCCTCTTGTCTACCCTCCTATGGATCT
CTCCGACTCCACGGAATTCACTATGCAACCAGTCACAGCTTGACGGGAAG
CCTGTACCAGCTGTCGTGCGGGACGGTAAATGGGGCGCTATGTCTGACAT
TCCACTACCCCTGGCCGTTGGTGGATCGAGAGATGGCCAATCGGTTCGCG
GACAGAGTGGTTCAAATCTTGAGGTGTATTGGTTGGGGAGAGAGAACGGA
GGGAGGGAGGGAGGGAGGGAGGGACAGAGAAGAGGAAAGTTGAAAGGGCC
TTTGGGTGTGACTTCCAGTTAGTCATTGGCAACGTGTCGATAGAAGGGGG
AGGTTCTCCGGCGTGTTGGACCAGAGAGGGAGGGATTGAAAATAGGATCG
TAGAAGTGTACAGTATAGCTCAAGATAGAGGGATCGACAGGATGCAGTGA
AGCCGATAAGCCGTTGAAAAAATAACATGGAGGCAGGAATGGTGCTCCGG
G
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protein sequence of NO09G02500.1

>NO09G02500.1-protein ID=NO09G02500.1-protein|Name=NO09G02500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=722bp
MRQSSKHASTILPLLLLVHFLAVCTHAFQSLRALKCPLVTQLSNAHSSSW
SSTDTETRPERETVIKSASSQPSQAPQTPPKRQPWRRLGSFETLLARKAA
AGPQRLSIPHVCVAVVDDEQGLLNARLLKPALVSLVRRHPKLRACIQGTG
KVEGAPVAGVRRGGREVDPLMWWPCAMTPEEVVEEALSFDDGSSSSSIND
DAQDSPFFFSVSFQAALDNTDMDSSRGPLWRLHVMRSQGSRKGTKPAGPG
GVGQVALLFIFNHAISDQVSCNTLIHELLSTLGETSSSSSSSSSSSSSIA
SQPFPPSIEKAILGPARATVSFTTALYAARECLFGLLPTTLYPTPTATAA
ATGTATALDTIPPPLPAANRRTICVFRREEPSRLSLLKEECKKRGVTVTA
ALSAAMLYATSDLAHGEEEEGRAEGVRNGKEHNYRFLLSLNMRTFSRRKL
GGGTEGGEGEKEKGKDDKEGEEDWEENAVASAAGAMDFMVRLQERQGRNL
LCTHKSTTSKNGTVAATAATAPGAPRPHVAGEEAFWLLAKQCRREFLDFV
SAGFVPESVNLFDWGMQTLELNEVVEKEAENPKTLGRAYTCGVSNMGVFE
DGMGGGRRRGSNRSSNGSRGMDEDFSLSSSAFSSCLPSYGSLRLHGIHYA
TSHSLTGSLYQLSCGTVNGALCLTFHYPWPLVDREMANRFADRVVQILRC
IGWGERTEGGREGGRDREEES*
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Synonyms
Publications