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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr9 | genome | chr9:746772..749222 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G02500.1 vs.
Match: EWM27563.1 (hypothetical protein Naga_100015g20 [Nannochloropsis gaditana]) HSP 1 Score: 630.9 bits (1626), Expect = 4.700e-177 Identity = 376/685 (54.89%), Postives = 447/685 (65.26%), Query Frame = 0
Query: 67 SASSQPSQAPQTPPK--------RQPWRRLGSFETLLARKAAAGPQRLSIPHVCVAVVDDEQGLLNARLLKPALVSLVRRHPKLRACIQGTGKVEGAPVAGVRRGGREVDPLMWWPCAMTPEEVVEEALSFDDGSSSSSIND-------------DAQDSPFFFSVSFQAALDNTDMDSSRGPLWRLHVMRSQGSRKGTKPAGPGGVGQVALLFIFNHAISDQVSCNTLIHELLSTLGETSSS----SSSSSSSSSSIASQPFPPSIEKAILGPARATVSFTTALYAARECLFGLLPTTL---YPTPTATAAATGTATALDTIPPP-LPAANRRTICVFRREEPSRLSLLKEECKKRGVTVTAALSAAMLYATSDLAHGEEEEG-------RAEGVRNGKEHNYRFLLSLNMRTFSRRKLGGGTEGGEGEKEKGKDDKEGEEDWEENAVASAAGAMDFMVRLQERQGRNLLCTHKSTTSKNGTVAATAATAPGAPRPHVAGEEAFWLLAKQCRREFLDFVSAGFVPESVNLFDWGMQTLELNEVVEKEAENPKTLGRAYTCGVSNMGVFEDGMGGGRRRGSNRSSNGS------------RGMDEDFSLSSSAFSSCLP--SYGSLRLHGIHYATSHSLTGSLYQLSCGTVNGALCLTFHYPWPLVDREMANRFADRVVQILRCI 702
SA S+P+ +PP R+ WRRLGSFETLLARKAAAGPQRLSIPHVC AVVDD + LL L+K AL +LV+RHPKLRACI+GT K++GAP+ GVRRGG+EVDPL WWPCAMT EVV ALS+ D + D + +D FFF+ FQ ALD TDMD+SRGPLWRL V+R G+R+ G++ALLF+FNHAISDQ SCNTLIHELL T+ SS + + + Q FPPSIE+A+LGP R T+S TT LYAARE LFG+LPTTL +P P+ T T PPP LPAA RRTIC FR + LS+L+ CK RGVTVTAAL AAMLYATSD AHG++ G + + R G HNYR LLSLNMR F R + G EGG GE+EK W E+AVASAAGAMDFMVRL E++G L K T G+ A T G G+ FW L K+CRRE +DF+ AGFV ESV LFDWGMQT+ELN+VVEKEAENP+T GRAYTCGVSNMG+F DG G R +S+GS R E + ++ S +P +YG +RL GI+YATSHSLTGSLYQLSCGTV+GALCLTFH+PWPLV R MA FA+RV+QIL+C+
Sbjct: 84 SADSKPTTV--SPPMSEQFQEGHRKSWRRLGSFETLLARKAAAGPQRLSIPHVCAAVVDDRKDLLEPHLVKRALSALVQRHPKLRACIRGTRKIDGAPIKGVRRGGKEVDPLAWWPCAMTDGEVVNNALSYVDVPTGGDAVDVSLQPSGSHPPPFEWEDDRFFFAHHFQRALDETDMDTSRGPLWRLKVLRPMGARR---------EGRIALLFLFNHAISDQTSCNTLIHELLDTVEHIHSSCLDRQPTPGRPAPFVIPQAFPPSIEEAVLGPTRGTLSLTTLLYAAREALFGILPTTLFPRFPPPSYTPRPTADPEGPPERPPPFLPAATRRTICEFRTLDSDSLSMLRAACKSRGVTVTAALCAAMLYATSDFAHGQDGGGGRPERGHKQQKGREGAYHNYRLLLSLNMRAFGRSRKDEGREGG-GEEEK---------MWAEHAVASAAGAMDFMVRLPEQRGSTLSLRPKRT---GGSEEANDGTEDGV----WEGKRDFWALTKRCRRELVDFIEAGFVAESVQLFDWGMQTIELNDVVEKEAENPQTFGRAYTCGVSNMGIF-DGTGRSRVLAEGPNSDGSASVHARCQNGEDRESGERMRVIEASTPSAVPTAAYGPMRLRGIYYATSHSLTGSLYQLSCGTVDGALCLTFHFPWPLVPRSMARCFANRVLQILQCV 739
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G02500.1 ID=NO09G02500.1|Name=NO09G02500.1|organism=Nannochloropsis oceanica|type=mRNA|length=2451bp
ACAGATACAGGCAGAGTATCCTAGCTAGCTGGTCTGCGCGGTGGTGGTAC
ATGCCGGGCTGAGACCCGCCCGTCGCGATGAGGCAGTCCTCCAAGCATGC
CTCAACCATCCTGCCCCTTCTCCTCCTCGTCCACTTCCTGGCAGTCTGCA
CGCATGCCTTCCAGTCCCTTCGCGCACTGAAGTGTCCGCTCGTCACGCAG
CTGTCAAATGCCCATTCCTCTTCGTGGTCCTCCACTGACACGGAAACTCG
GCCAGAGCGAGAGACAGTGATCAAGTCCGCCTCATCCCAACCATCACAAG
CACCCCAAACCCCCCCAAAACGCCAGCCCTGGCGCCGTCTGGGCAGCTTT
GAGACATTGTTGGCCCGGAAAGCAGCAGCAGGACCGCAGCGGTTGTCCAT
ACCTCATGTCTGTGTGGCCGTTGTCGATGATGAACAAGGACTGTTGAATG
CTCGGCTGCTTAAGCCAGCGTTAGTCTCGCTCGTGCGGCGCCATCCCAAG
CTGCGAGCCTGCATTCAGGGCACGGGCAAGGTGGAGGGAGCGCCTGTGGC
CGGGGTGCGACGAGGAGGAAGAGAAGTCGACCCCTTGATGTGGTGGCCAT
GTGCGATGACACCTGAAGAGGTGGTAGAAGAAGCGTTGTCATTCGACGAC
GGCAGCAGTAGCAGCAGCATTAATGACGATGCGCAGGACTCTCCTTTCTT
CTTCTCTGTATCCTTTCAAGCGGCTTTGGACAATACGGACATGGATTCGA
GTCGTGGACCTCTGTGGCGACTGCATGTAATGCGCTCTCAAGGGAGCAGA
AAAGGCACCAAACCTGCAGGGCCAGGAGGAGTAGGGCAGGTTGCTTTGCT
CTTCATTTTCAACCACGCCATAAGCGACCAAGTCTCCTGCAACACGCTCA
TCCATGAGCTACTGTCGACGCTCGGAGAGACCTCATCCTCATCCTCATCC
TCATCCTCATCCTCCTCCTCCATCGCTTCCCAGCCTTTCCCCCCCTCCAT
CGAAAAGGCCATCCTGGGTCCCGCCCGAGCCACGGTCAGTTTCACAACTG
CCCTCTACGCCGCCCGCGAATGTCTTTTCGGCCTTCTCCCCACCACTCTC
TACCCTACGCCTACAGCAACAGCAGCAGCGACAGGGACCGCGACAGCACT
AGACACCATCCCTCCTCCCCTCCCTGCAGCGAACCGAAGGACCATATGTG
TATTTCGTCGTGAGGAACCCTCCAGGCTGTCCCTCTTGAAGGAAGAGTGT
AAGAAGAGGGGGGTGACAGTGACAGCTGCCTTGTCTGCGGCCATGCTGTA
TGCCACCAGTGATCTGGCGCATGGAGAGGAAGAGGAAGGGAGGGCTGAAG
GGGTACGAAACGGAAAAGAGCACAATTATCGTTTTTTGCTGTCCTTGAAC
ATGCGCACATTTTCTCGCCGTAAGCTTGGGGGAGGAACGGAGGGAGGGGA
GGGAGAAAAGGAGAAAGGGAAGGATGACAAGGAGGGGGAGGAGGACTGGG
AAGAGAATGCAGTGGCATCAGCAGCCGGTGCAATGGACTTTATGGTCCGC
TTGCAGGAAAGGCAAGGCAGAAACCTCCTCTGTACTCACAAATCAACGAC
AAGCAAGAACGGAACGGTAGCCGCAACTGCTGCAACAGCACCAGGAGCAC
CAAGACCACATGTAGCTGGAGAGGAAGCATTTTGGCTCCTGGCTAAACAA
TGCCGTCGTGAGTTTCTAGATTTTGTCTCGGCCGGTTTCGTCCCCGAATC
CGTTAATTTGTTTGATTGGGGTATGCAGACATTGGAATTGAATGAGGTAG
TGGAGAAGGAGGCCGAAAACCCTAAGACTCTGGGAAGGGCGTATACTTGT
GGAGTGTCGAACATGGGAGTGTTTGAAGATGGGATGGGAGGAGGGAGGCG
CAGAGGCAGCAATCGCAGCAGCAACGGCAGCCGAGGGATGGACGAAGATT
TCTCTCTCTCTTCTTCAGCCTTTTCCTCTTGTCTACCCTCCTATGGATCT
CTCCGACTCCACGGAATTCACTATGCAACCAGTCACAGCTTGACGGGAAG
CCTGTACCAGCTGTCGTGCGGGACGGTAAATGGGGCGCTATGTCTGACAT
TCCACTACCCCTGGCCGTTGGTGGATCGAGAGATGGCCAATCGGTTCGCG
GACAGAGTGGTTCAAATCTTGAGGTGTATTGGTTGGGGAGAGAGAACGGA
GGGAGGGAGGGAGGGAGGGAGGGACAGAGAAGAGGAAAGTTGAAAGGGCC
TTTGGGTGTGACTTCCAGTTAGTCATTGGCAACGTGTCGATAGAAGGGGG
AGGTTCTCCGGCGTGTTGGACCAGAGAGGGAGGGATTGAAAATAGGATCG
TAGAAGTGTACAGTATAGCTCAAGATAGAGGGATCGACAGGATGCAGTGA
AGCCGATAAGCCGTTGAAAAAATAACATGGAGGCAGGAATGGTGCTCCGG
G back to topprotein sequence of NO09G02500.1 >NO09G02500.1-protein ID=NO09G02500.1-protein|Name=NO09G02500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=722bp
MRQSSKHASTILPLLLLVHFLAVCTHAFQSLRALKCPLVTQLSNAHSSSW
SSTDTETRPERETVIKSASSQPSQAPQTPPKRQPWRRLGSFETLLARKAA
AGPQRLSIPHVCVAVVDDEQGLLNARLLKPALVSLVRRHPKLRACIQGTG
KVEGAPVAGVRRGGREVDPLMWWPCAMTPEEVVEEALSFDDGSSSSSIND
DAQDSPFFFSVSFQAALDNTDMDSSRGPLWRLHVMRSQGSRKGTKPAGPG
GVGQVALLFIFNHAISDQVSCNTLIHELLSTLGETSSSSSSSSSSSSSIA
SQPFPPSIEKAILGPARATVSFTTALYAARECLFGLLPTTLYPTPTATAA
ATGTATALDTIPPPLPAANRRTICVFRREEPSRLSLLKEECKKRGVTVTA
ALSAAMLYATSDLAHGEEEEGRAEGVRNGKEHNYRFLLSLNMRTFSRRKL
GGGTEGGEGEKEKGKDDKEGEEDWEENAVASAAGAMDFMVRLQERQGRNL
LCTHKSTTSKNGTVAATAATAPGAPRPHVAGEEAFWLLAKQCRREFLDFV
SAGFVPESVNLFDWGMQTLELNEVVEKEAENPKTLGRAYTCGVSNMGVFE
DGMGGGRRRGSNRSSNGSRGMDEDFSLSSSAFSSCLPSYGSLRLHGIHYA
TSHSLTGSLYQLSCGTVNGALCLTFHYPWPLVDREMANRFADRVVQILRC
IGWGERTEGGREGGRDREEES* back to topmRNA from alignment at chr9:746772..749222- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G02500.1 ID=NO09G02500.1|Name=NO09G02500.1|organism=Nannochloropsis oceanica|type=mRNA|length=2451bp|location=Sequence derived from alignment at chr9:746772..749222- (Nannochloropsis oceanica)
ACAGATACAGGCAGAGTATCCTAGCTAGCTGGTCTGCGCGGTGGTGGTAC
ATGCCGGGCTGAGACCCGCCCGTCGCGATGAGGCAGTCCTCCAAGCATGC
CTCAACCATCCTGCCCCTTCTCCTCCTCGTCCACTTCCTGGCAGTCTGCA
CGCATGCCTTCCAGTCCCTTCGCGCACTGAAGTGTCCGCTCGTCACGCAG
CTGTCAAATGCCCATTCCTCTTCGTGGTCCTCCACTGACACGGAAACTCG
GCCAGAGCGAGAGACAGTGATCAAGTCCGCCTCATCCCAACCATCACAAG
CACCCCAAACCCCCCCAAAACGCCAGCCCTGGCGCCGTCTGGGCAGCTTT
GAGACATTGTTGGCCCGGAAAGCAGCAGCAGGACCGCAGCGGTTGTCCAT
ACCTCATGTCTGTGTGGCCGTTGTCGATGATGAACAAGGACTGTTGAATG
CTCGGCTGCTTAAGCCAGCGTTAGTCTCGCTCGTGCGGCGCCATCCCAAG
CTGCGAGCCTGCATTCAGGGCACGGGCAAGGTGGAGGGAGCGCCTGTGGC
CGGGGTGCGACGAGGAGGAAGAGAAGTCGACCCCTTGATGTGGTGGCCAT
GTGCGATGACACCTGAAGAGGTGGTAGAAGAAGCGTTGTCATTCGACGAC
GGCAGCAGTAGCAGCAGCATTAATGACGATGCGCAGGACTCTCCTTTCTT
CTTCTCTGTATCCTTTCAAGCGGCTTTGGACAATACGGACATGGATTCGA
GTCGTGGACCTCTGTGGCGACTGCATGTAATGCGCTCTCAAGGGAGCAGA
AAAGGCACCAAACCTGCAGGGCCAGGAGGAGTAGGGCAGGTTGCTTTGCT
CTTCATTTTCAACCACGCCATAAGCGACCAAGTCTCCTGCAACACGCTCA
TCCATGAGCTACTGTCGACGCTCGGAGAGACCTCATCCTCATCCTCATCC
TCATCCTCATCCTCCTCCTCCATCGCTTCCCAGCCTTTCCCCCCCTCCAT
CGAAAAGGCCATCCTGGGTCCCGCCCGAGCCACGGTCAGTTTCACAACTG
CCCTCTACGCCGCCCGCGAATGTCTTTTCGGCCTTCTCCCCACCACTCTC
TACCCTACGCCTACAGCAACAGCAGCAGCGACAGGGACCGCGACAGCACT
AGACACCATCCCTCCTCCCCTCCCTGCAGCGAACCGAAGGACCATATGTG
TATTTCGTCGTGAGGAACCCTCCAGGCTGTCCCTCTTGAAGGAAGAGTGT
AAGAAGAGGGGGGTGACAGTGACAGCTGCCTTGTCTGCGGCCATGCTGTA
TGCCACCAGTGATCTGGCGCATGGAGAGGAAGAGGAAGGGAGGGCTGAAG
GGGTACGAAACGGAAAAGAGCACAATTATCGTTTTTTGCTGTCCTTGAAC
ATGCGCACATTTTCTCGCCGTAAGCTTGGGGGAGGAACGGAGGGAGGGGA
GGGAGAAAAGGAGAAAGGGAAGGATGACAAGGAGGGGGAGGAGGACTGGG
AAGAGAATGCAGTGGCATCAGCAGCCGGTGCAATGGACTTTATGGTCCGC
TTGCAGGAAAGGCAAGGCAGAAACCTCCTCTGTACTCACAAATCAACGAC
AAGCAAGAACGGAACGGTAGCCGCAACTGCTGCAACAGCACCAGGAGCAC
CAAGACCACATGTAGCTGGAGAGGAAGCATTTTGGCTCCTGGCTAAACAA
TGCCGTCGTGAGTTTCTAGATTTTGTCTCGGCCGGTTTCGTCCCCGAATC
CGTTAATTTGTTTGATTGGGGTATGCAGACATTGGAATTGAATGAGGTAG
TGGAGAAGGAGGCCGAAAACCCTAAGACTCTGGGAAGGGCGTATACTTGT
GGAGTGTCGAACATGGGAGTGTTTGAAGATGGGATGGGAGGAGGGAGGCG
CAGAGGCAGCAATCGCAGCAGCAACGGCAGCCGAGGGATGGACGAAGATT
TCTCTCTCTCTTCTTCAGCCTTTTCCTCTTGTCTACCCTCCTATGGATCT
CTCCGACTCCACGGAATTCACTATGCAACCAGTCACAGCTTGACGGGAAG
CCTGTACCAGCTGTCGTGCGGGACGGTAAATGGGGCGCTATGTCTGACAT
TCCACTACCCCTGGCCGTTGGTGGATCGAGAGATGGCCAATCGGTTCGCG
GACAGAGTGGTTCAAATCTTGAGGTGTATTGGTTGGGGAGAGAGAACGGA
GGGAGGGAGGGAGGGAGGGAGGGACAGAGAAGAGGAAAGTTGAAAGGGCC
TTTGGGTGTGACTTCCAGTTAGTCATTGGCAACGTGTCGATAGAAGGGGG
AGGTTCTCCGGCGTGTTGGACCAGAGAGGGAGGGATTGAAAATAGGATCG
TAGAAGTGTACAGTATAGCTCAAGATAGAGGGATCGACAGGATGCAGTGA
AGCCGATAAGCCGTTGAAAAAATAACATGGAGGCAGGAATGGTGCTCCGG
G back to topCoding sequence (CDS) from alignment at chr9:746772..749222- >NO09G02500.1 ID=NO09G02500.1|Name=NO09G02500.1|organism=Nannochloropsis oceanica|type=CDS|length=2166bp|location=Sequence derived from alignment at chr9:746772..749222- (Nannochloropsis oceanica)
ATGAGGCAGTCCTCCAAGCATGCCTCAACCATCCTGCCCCTTCTCCTCCT
CGTCCACTTCCTGGCAGTCTGCACGCATGCCTTCCAGTCCCTTCGCGCAC
TGAAGTGTCCGCTCGTCACGCAGCTGTCAAATGCCCATTCCTCTTCGTGG
TCCTCCACTGACACGGAAACTCGGCCAGAGCGAGAGACAGTGATCAAGTC
CGCCTCATCCCAACCATCACAAGCACCCCAAACCCCCCCAAAACGCCAGC
CCTGGCGCCGTCTGGGCAGCTTTGAGACATTGTTGGCCCGGAAAGCAGCA
GCAGGACCGCAGCGGTTGTCCATACCTCATGTCTGTGTGGCCGTTGTCGA
TGATGAACAAGGACTGTTGAATGCTCGGCTGCTTAAGCCAGCGTTAGTCT
CGCTCGTGCGGCGCCATCCCAAGCTGCGAGCCTGCATTCAGGGCACGGGC
AAGGTGGAGGGAGCGCCTGTGGCCGGGGTGCGACGAGGAGGAAGAGAAGT
CGACCCCTTGATGTGGTGGCCATGTGCGATGACACCTGAAGAGGTGGTAG
AAGAAGCGTTGTCATTCGACGACGGCAGCAGTAGCAGCAGCATTAATGAC
GATGCGCAGGACTCTCCTTTCTTCTTCTCTGTATCCTTTCAAGCGGCTTT
GGACAATACGGACATGGATTCGAGTCGTGGACCTCTGTGGCGACTGCATG
TAATGCGCTCTCAAGGGAGCAGAAAAGGCACCAAACCTGCAGGGCCAGGA
GGAGTAGGGCAGGTTGCTTTGCTCTTCATTTTCAACCACGCCATAAGCGA
CCAAGTCTCCTGCAACACGCTCATCCATGAGCTACTGTCGACGCTCGGAG
AGACCTCATCCTCATCCTCATCCTCATCCTCATCCTCCTCCTCCATCGCT
TCCCAGCCTTTCCCCCCCTCCATCGAAAAGGCCATCCTGGGTCCCGCCCG
AGCCACGGTCAGTTTCACAACTGCCCTCTACGCCGCCCGCGAATGTCTTT
TCGGCCTTCTCCCCACCACTCTCTACCCTACGCCTACAGCAACAGCAGCA
GCGACAGGGACCGCGACAGCACTAGACACCATCCCTCCTCCCCTCCCTGC
AGCGAACCGAAGGACCATATGTGTATTTCGTCGTGAGGAACCCTCCAGGC
TGTCCCTCTTGAAGGAAGAGTGTAAGAAGAGGGGGGTGACAGTGACAGCT
GCCTTGTCTGCGGCCATGCTGTATGCCACCAGTGATCTGGCGCATGGAGA
GGAAGAGGAAGGGAGGGCTGAAGGGGTACGAAACGGAAAAGAGCACAATT
ATCGTTTTTTGCTGTCCTTGAACATGCGCACATTTTCTCGCCGTAAGCTT
GGGGGAGGAACGGAGGGAGGGGAGGGAGAAAAGGAGAAAGGGAAGGATGA
CAAGGAGGGGGAGGAGGACTGGGAAGAGAATGCAGTGGCATCAGCAGCCG
GTGCAATGGACTTTATGGTCCGCTTGCAGGAAAGGCAAGGCAGAAACCTC
CTCTGTACTCACAAATCAACGACAAGCAAGAACGGAACGGTAGCCGCAAC
TGCTGCAACAGCACCAGGAGCACCAAGACCACATGTAGCTGGAGAGGAAG
CATTTTGGCTCCTGGCTAAACAATGCCGTCGTGAGTTTCTAGATTTTGTC
TCGGCCGGTTTCGTCCCCGAATCCGTTAATTTGTTTGATTGGGGTATGCA
GACATTGGAATTGAATGAGGTAGTGGAGAAGGAGGCCGAAAACCCTAAGA
CTCTGGGAAGGGCGTATACTTGTGGAGTGTCGAACATGGGAGTGTTTGAA
GATGGGATGGGAGGAGGGAGGCGCAGAGGCAGCAATCGCAGCAGCAACGG
CAGCCGAGGGATGGACGAAGATTTCTCTCTCTCTTCTTCAGCCTTTTCCT
CTTGTCTACCCTCCTATGGATCTCTCCGACTCCACGGAATTCACTATGCA
ACCAGTCACAGCTTGACGGGAAGCCTGTACCAGCTGTCGTGCGGGACGGT
AAATGGGGCGCTATGTCTGACATTCCACTACCCCTGGCCGTTGGTGGATC
GAGAGATGGCCAATCGGTTCGCGGACAGAGTGGTTCAAATCTTGAGGTGT
ATTGGTTGGGGAGAGAGAACGGAGGGAGGGAGGGAGGGAGGGAGGGACAG
AGAAGAGGAAAGTTGA back to top
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