NO09G02160, NO09G02160 (gene) Nannochloropsis oceanica

Overview
NameNO09G02160
Unique NameNO09G02160
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1162
Alignment locationchr9:660221..661382 +

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Properties
Property NameValue
DescriptionKinetochore-Ndc80 subunit Spc24
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:660221..661382 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013252Ndc80_Spc24
Homology
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BLAST of NO09G02160 vs. NCBI_GenBank
Match: XP_004364219.2 (hypothetical protein CAOG_03380 [Capsaspora owczarzaki ATCC 30864] >KJE92402.1 hypothetical protein CAOG_003380 [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 63.5 bits (153), Expect = 8.400e-7
Identity = 51/195 (26.15%), Postives = 95/195 (48.72%), Query Frame = 0 
Query:    4 MSWEETRSIMAEVQELFAGREDMNTVEEIRALQKEMKEAVQSREASAAACIRGLTAEVGVAQA-VVDAFPAARDASKAQKAALEGEKEHVSEVLASLTTDIAEARQNVECMEAERIDVEEKAKGVEHASSEQAPRVLHALSLYANITGIRWKYEDDENSHLIRGFVSLPSKDEVREFSLDCNKESTFKVANTIWD 198
            ++++ T  +M E   +F   +D+  V EI  LQ+++ +  + RE ++ A I  LTA++   ++  V A P  + A   Q   +E +K  +++                            + + VE A +   P+    +SLY NIT I+W +E D   +L++GFV+    ++VR FSLD   ++ + +AN +W+
Sbjct:    3 VTFQTTGELMREATRVFTQGDDVREVSEIMQLQRQVSDIHEQRELASKAAILELTAKLSAEESKCVRATPDNQHAEVLQN--IENDKFALAKSXXXXXXXXXXXXXXXXXXXXXXXXXXARRQAVEQARTVGVPQNKSIVSLYMNITNIKWDFEQD---NLVKGFVT--KNNDVRPFSLDPKVQTPYFIANYLWE 190
The following BLAST results are available for this feature:
BLAST of NO09G02160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 11
Match NameE-valueIdentityDescription
XP_004364219.28.400e-726.15hypothetical protein CAOG_03380 [Capsaspora owczar... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010732NSK010732Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G02160.1NO09G02160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588772gene_4335Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100015g56gene2984Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G02160.1NO09G02160.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G02160 ID=NO09G02160|Name=NO09G02160|organism=Nannochloropsis oceanica|type=gene|length=1162bp
ATGCCCCAAATGAGCTGGGAAGAGACGCGGAGCATCATGGCCGAGGTCCA
GGAGCTCTTTGCGGGTCGCGAGgtaaggcactaactgaagcgcgtgaatg
gggagggaacgcagtaggccttcgctctctcccattatcatgatcatcag
ccaaagcaagaagtccacgacacacgagcggtggtatcatgcactacggc
cacccgtccccaacgacctgcgttcttcttcgcgcacccgtgcttcccgc
accttgtcgcggcccttgccctcgtctgcatccctgccgctccctcaatc
ctctctcctctctcccccatcaccacctctccgccacagGATATGAACAC
CGTCGAAGAGATCCGTGCCCTGCAAAAAGAAATGAAGGAAGCTGTGCAAT
CCCGCGAGGCTTCCGCAGCTGCGTGCATCCGCGGGTTGACCGCGGAAGTG
GGCGTGGCTCAAGCAGTGGTGGATGCCTTCCCCGCTGCCCGAGACGCAAG
CAAGGCGCAAAAAGCGGCATTGGAGGGGGAGAAGGAGCATGTGTCCGAGG
TGCTGGCCAGCTTGACTACAGACATAGCGGAGGCGAGGCAGAATGTGGAG
TGTATGGAAGCGGAGCGGATTGATGTGGAGGAGAAGGCGAAGGGGGTGGA
GCACGCGAGCTCAGAGCAGGCCCCGCGGGTATTGCACGCTTTGAGTTTGT
ACGCGAACATAACGGGGATTCGGTGGAAGTACGAGGATGACGAGAACAGC
CACTTGATTCGGGGATgtgagtatgggagggatggggggagggagggagg
gagggagggagggcgggaggtgcatcgtgtgtgtgtgagagggagtgggt
atgggtgagagagcgtgtgtgtgtatgtgtatatatgcttgtgcgtttcc
tgttcccaccccctacagtcgtctttctgtccagtaagatgagatgtggg
agttccctagcctgctccaagaggagcacgtagaaagtcgccgataccac
ttcacactcacccttcttccctccctcccttcctccctccctcccctgta
cacagTCGTCTCTCTGCCCAGCAAGGACGAGGTGCGTGAGTTCTCTCTAG
ACTGCAACAAGGAAAGCACCTTCAAAGTCGCCAATACCATTTGGGACATG
ATCGATCCTTGA
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protein sequence of NO09G02160.1

>NO09G02160.1-protein ID=NO09G02160.1-protein|Name=NO09G02160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MPQMSWEETRSIMAEVQELFAGREDMNTVEEIRALQKEMKEAVQSREASA
AACIRGLTAEVGVAQAVVDAFPAARDASKAQKAALEGEKEHVSEVLASLT
TDIAEARQNVECMEAERIDVEEKAKGVEHASSEQAPRVLHALSLYANITG
IRWKYEDDENSHLIRGFVSLPSKDEVREFSLDCNKESTFKVANTIWDMID
P*
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Synonyms
Publications