NO09G02160.1, NO09G02160.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02160.1
Unique NameNO09G02160.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length606
Alignment locationchr9:660221..661382 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:660221..661382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G02160.1 vs.
Match: EWM27534.1 (Kinetochore-Ndc80 subunit Spc24 [Nannochloropsis gaditana])

HSP 1 Score: 298.5 bits (763), Expect = 1.600e-77
Identity = 150/201 (74.63%), Postives = 173/201 (86.07%), Query Frame = 0
Query:    1 MPQMSWEETRSIMAEVQELFAGREDMNTVEEIRALQKEMKEAVQSREASAAACIRGLTAEVGVAQAVVDAFPAARDASKAQKAALEGEKEHVSEVLASLTTDIAEARQNVECMEAERIDVEEKAKGVEHASSEQAPRVLHALSLYANITGIRWKYEDDENSHLIRGFVSLPSKDEVREFSLDCNKESTFKVANTIWDMIDP 202
            MPQM+WEETRSIM+EVQELFAGRED NT+EEIR LQ+E+KE VQSREA AA CIRGLTAEV V+QA VDA PAA +A K++KAALEGEK    E L ++   IA+ RQNVECM  E  +VEEKAKG+EHAS +QAPRVLHALSLYANITGIRWKY+D E SHLIRGFVSLP K+EVREF+LDC+KES+FK+AN+IW+MIDP
Sbjct:    1 MPQMTWEETRSIMSEVQELFAGREDTNTIEEIRELQREIKETVQSREAGAATCIRGLTAEVNVSQAAVDALPAAEEADKSRKAALEGEKGETEEALVAMNKKIADMRQNVECMTVEAEEVEEKAKGIEHASQDQAPRVLHALSLYANITGIRWKYDDGEKSHLIRGFVSLPEKEEVREFTLDCHKESSFKIANSIWNMIDP 201          
The following BLAST results are available for this feature:
BLAST of NO09G02160.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27534.11.600e-7774.63Kinetochore-Ndc80 subunit Spc24 [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02160NO09G02160Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02160.1NO09G02160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02160.1.cds1NO09G02160.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G02160.1.cds2NO09G02160.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G02160.1.cds3NO09G02160.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02160.1 ID=NO09G02160.1|Name=NO09G02160.1|organism=Nannochloropsis oceanica|type=mRNA|length=606bp
ATGCCCCAAATGAGCTGGGAAGAGACGCGGAGCATCATGGCCGAGGTCCA
GGAGCTCTTTGCGGGTCGCGAGGATATGAACACCGTCGAAGAGATCCGTG
CCCTGCAAAAAGAAATGAAGGAAGCTGTGCAATCCCGCGAGGCTTCCGCA
GCTGCGTGCATCCGCGGGTTGACCGCGGAAGTGGGCGTGGCTCAAGCAGT
GGTGGATGCCTTCCCCGCTGCCCGAGACGCAAGCAAGGCGCAAAAAGCGG
CATTGGAGGGGGAGAAGGAGCATGTGTCCGAGGTGCTGGCCAGCTTGACT
ACAGACATAGCGGAGGCGAGGCAGAATGTGGAGTGTATGGAAGCGGAGCG
GATTGATGTGGAGGAGAAGGCGAAGGGGGTGGAGCACGCGAGCTCAGAGC
AGGCCCCGCGGGTATTGCACGCTTTGAGTTTGTACGCGAACATAACGGGG
ATTCGGTGGAAGTACGAGGATGACGAGAACAGCCACTTGATTCGGGGATT
CGTCTCTCTGCCCAGCAAGGACGAGGTGCGTGAGTTCTCTCTAGACTGCA
ACAAGGAAAGCACCTTCAAAGTCGCCAATACCATTTGGGACATGATCGAT
CCTTGA
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protein sequence of NO09G02160.1

>NO09G02160.1-protein ID=NO09G02160.1-protein|Name=NO09G02160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MPQMSWEETRSIMAEVQELFAGREDMNTVEEIRALQKEMKEAVQSREASA
AACIRGLTAEVGVAQAVVDAFPAARDASKAQKAALEGEKEHVSEVLASLT
TDIAEARQNVECMEAERIDVEEKAKGVEHASSEQAPRVLHALSLYANITG
IRWKYEDDENSHLIRGFVSLPSKDEVREFSLDCNKESTFKVANTIWDMID
P*
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mRNA from alignment at chr9:660221..661382+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02160.1 ID=NO09G02160.1|Name=NO09G02160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1162bp|location=Sequence derived from alignment at chr9:660221..661382+ (Nannochloropsis oceanica)
ATGCCCCAAATGAGCTGGGAAGAGACGCGGAGCATCATGGCCGAGGTCCA GGAGCTCTTTGCGGGTCGCGAGGTAAGGCACTAACTGAAGCGCGTGAATG GGGAGGGAACGCAGTAGGCCTTCGCTCTCTCCCATTATCATGATCATCAG CCAAAGCAAGAAGTCCACGACACACGAGCGGTGGTATCATGCACTACGGC CACCCGTCCCCAACGACCTGCGTTCTTCTTCGCGCACCCGTGCTTCCCGC ACCTTGTCGCGGCCCTTGCCCTCGTCTGCATCCCTGCCGCTCCCTCAATC CTCTCTCCTCTCTCCCCCATCACCACCTCTCCGCCACAGGATATGAACAC CGTCGAAGAGATCCGTGCCCTGCAAAAAGAAATGAAGGAAGCTGTGCAAT CCCGCGAGGCTTCCGCAGCTGCGTGCATCCGCGGGTTGACCGCGGAAGTG GGCGTGGCTCAAGCAGTGGTGGATGCCTTCCCCGCTGCCCGAGACGCAAG CAAGGCGCAAAAAGCGGCATTGGAGGGGGAGAAGGAGCATGTGTCCGAGG TGCTGGCCAGCTTGACTACAGACATAGCGGAGGCGAGGCAGAATGTGGAG TGTATGGAAGCGGAGCGGATTGATGTGGAGGAGAAGGCGAAGGGGGTGGA GCACGCGAGCTCAGAGCAGGCCCCGCGGGTATTGCACGCTTTGAGTTTGT ACGCGAACATAACGGGGATTCGGTGGAAGTACGAGGATGACGAGAACAGC CACTTGATTCGGGGATGTGAGTATGGGAGGGATGGGGGGAGGGAGGGAGG GAGGGAGGGAGGGCGGGAGGTGCATCGTGTGTGTGTGAGAGGGAGTGGGT ATGGGTGAGAGAGCGTGTGTGTGTATGTGTATATATGCTTGTGCGTTTCC TGTTCCCACCCCCTACAGTCGTCTTTCTGTCCAGTAAGATGAGATGTGGG AGTTCCCTAGCCTGCTCCAAGAGGAGCACGTAGAAAGTCGCCGATACCAC TTCACACTCACCCTTCTTCCCTCCCTCCCTTCCTCCCTCCCTCCCCTGTA CACAGTCGTCTCTCTGCCCAGCAAGGACGAGGTGCGTGAGTTCTCTCTAG ACTGCAACAAGGAAAGCACCTTCAAAGTCGCCAATACCATTTGGGACATG ATCGATCCTTGA
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Coding sequence (CDS) from alignment at chr9:660221..661382+

>NO09G02160.1 ID=NO09G02160.1|Name=NO09G02160.1|organism=Nannochloropsis oceanica|type=CDS|length=606bp|location=Sequence derived from alignment at chr9:660221..661382+ (Nannochloropsis oceanica)
ATGCCCCAAATGAGCTGGGAAGAGACGCGGAGCATCATGGCCGAGGTCCA
GGAGCTCTTTGCGGGTCGCGAGGATATGAACACCGTCGAAGAGATCCGTG
CCCTGCAAAAAGAAATGAAGGAAGCTGTGCAATCCCGCGAGGCTTCCGCA
GCTGCGTGCATCCGCGGGTTGACCGCGGAAGTGGGCGTGGCTCAAGCAGT
GGTGGATGCCTTCCCCGCTGCCCGAGACGCAAGCAAGGCGCAAAAAGCGG
CATTGGAGGGGGAGAAGGAGCATGTGTCCGAGGTGCTGGCCAGCTTGACT
ACAGACATAGCGGAGGCGAGGCAGAATGTGGAGTGTATGGAAGCGGAGCG
GATTGATGTGGAGGAGAAGGCGAAGGGGGTGGAGCACGCGAGCTCAGAGC
AGGCCCCGCGGGTATTGCACGCTTTGAGTTTGTACGCGAACATAACGGGG
ATTCGGTGGAAGTACGAGGATGACGAGAACAGCCACTTGATTCGGGGATT
CGTCTCTCTGCCCAGCAAGGACGAGGTGCGTGAGTTCTCTCTAGACTGCA
ACAAGGAAAGCACCTTCAAAGTCGCCAATACCATTTGGGACATGATCGAT
CCTTGA
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Synonyms
Publications