NO09G02160, NO09G02160 (gene) Nannochloropsis oceanica

Overview
NameNO09G02160
Unique NameNO09G02160
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1162
Alignment locationchr9:660221..661382 +

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Properties
Property NameValue
DescriptionKinetochore-Ndc80 subunit Spc24
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:660221..661382 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013252Ndc80_Spc24
Homology
BLAST of NO09G02160 vs. NCBI_GenBank
Match: EWM27534.1 (Kinetochore-Ndc80 subunit Spc24 [Nannochloropsis gaditana])

HSP 1 Score: 298.5 bits (763), Expect = 1.600e-77
Identity = 150/201 (74.63%), Postives = 173/201 (86.07%), Query Frame = 0
Query:    1 MPQMSWEETRSIMAEVQELFAGREDMNTVEEIRALQKEMKEAVQSREASAAACIRGLTAEVGVAQAVVDAFPAARDASKAQKAALEGEKEHVSEVLASLTTDIAEARQNVECMEAERIDVEEKAKGVEHASSEQAPRVLHALSLYANITGIRWKYEDDENSHLIRGFVSLPSKDEVREFSLDCNKESTFKVANTIWDMIDP 202
            MPQM+WEETRSIM+EVQELFAGRED NT+EEIR LQ+E+KE VQSREA AA CIRGLTAEV V+QA VDA PAA +A K++KAALEGEK    E L ++   IA+ RQNVECM  E  +VEEKAKG+EHAS +QAPRVLHALSLYANITGIRWKY+D E SHLIRGFVSLP K+EVREF+LDC+KES+FK+AN+IW+MIDP
Sbjct:    1 MPQMTWEETRSIMSEVQELFAGREDTNTIEEIRELQREIKETVQSREAGAATCIRGLTAEVNVSQAAVDALPAAEEADKSRKAALEGEKGETEEALVAMNKKIADMRQNVECMTVEAEEVEEKAKGIEHASQDQAPRVLHALSLYANITGIRWKYDDGEKSHLIRGFVSLPEKEEVREFTLDCHKESSFKIANSIWNMIDP 201          
BLAST of NO09G02160 vs. NCBI_GenBank
Match: GAQ88434.1 (hypothetical protein KFL_004280030 [Klebsormidium nitens])

HSP 1 Score: 77.8 bits (190), Expect = 4.300e-11
Identity = 49/193 (25.39%), Postives = 101/193 (52.33%), Query Frame = 0
Query:    7 EETRSIMAEVQELFAGREDMNTVEEIRALQKEMKEAVQSREASAAACIRGLTAEVGVAQAVVDAFPAARDASKAQKAALEGEKEHVSEVLASLTTDIAEARQNVECMEAERIDVEEKAKGVEHASSEQAPRVLHALSLYANITGIRWKYEDDENSHLIRGFVSLPSKDEVREFSLDCNKESTFKVANTIWDMI 200
            EET ++M ++Q +F  RED + + +I+   +E  + + SRE   A  +  +  ++  A++     P    A + +  A++ E     + +  L  D+ +  Q  E ++ +   +E K K +E  + E+ P+ L+ ++L+A+I+ I W +E+ E    ++G+++   + ++R F  D  K S F + N +WD I
Sbjct:    7 EETLAVMGDLQRVFESREDADRIVKIQKKCEEAMQLIASRERHMADVLAEMKEQLREAESRATP-PEPESAHEERVDAIKEEARLAWQNIDRLQLDLQQLEQYREGLDEQFKSLEAKRKQLESLAKEEMPKTLYEITLFAHISSITWDFEEKER---VKGYITKIEEGDIRNFDFDTKKISQFDLTNQLWDWI 195          
BLAST of NO09G02160 vs. NCBI_GenBank
Match: XP_011396993.1 (hypothetical protein F751_1372 [Auxenochlorella protothecoides] >KFM24107.1 hypothetical protein F751_1372 [Auxenochlorella protothecoides])

HSP 1 Score: 75.1 bits (183), Expect = 2.800e-10
Identity = 53/195 (27.18%), Postives = 102/195 (52.31%), Query Frame = 0
Query:    6 WEETRSIMAEVQELFAGREDMNTVEEIRALQKEMKEAVQSREASAAACIRGLTAEVGVAQAVVDAFPAARDASKAQKAALEGEKEHVSEVLASLTTDIAEARQNVECMEAERIDVEEKAKGVEHASSEQAPRVLHALSLYANITGIRWKYEDDENSHLIRGFVSLPSKDEVREFSLDCNKESTFKVANTIWDMID 201
            ++E   ++A +++ +A  +D +T+ E+  +Q+E++  + SRE +    I+ L++ V  A+ +   +P    A  A+   LE       + +A LTT++    +  + + +   +V  K   V+H   E  PR+ H LSLYA+++ I W++   +N   I G VS P K +VR F L   +   F+  N +W +++
Sbjct:    7 FDEHLGVIAALRDNYARHDDTDTIRELLGIQEELEGLLSSREDTVKQAIQALSSRVEEAR-IKAVYPEEEGAHDARLRELEARVAASKQHVAQLTTELEALGKQRQQLGSSMKEVGLKKAQVDHLLLEDEPRIRHQLSLYAHVSKISWRF---DNPDRIAGTVSDPEKADVRLFDL-APQMPRFEATNQLWRLME 196          
BLAST of NO09G02160 vs. NCBI_GenBank
Match: GBG33328.1 (Kinetochore protein Spc24 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 73.9 bits (180), Expect = 6.200e-10
Identity = 56/192 (29.17%), Postives = 100/192 (52.08%), Query Frame = 0
Query:   10 RSIMAEVQELFAGREDMNTVEEIRALQKEMKEAVQSREASAAACIRGLTAEVGVAQAVVDAFPAARDASKAQKAALEGEKEHVSEVLASLTTDIAEARQNVECMEAERIDVEEKAKGVEHASSEQAPRVLHALSLYANITGIRWKYE-DDENSHLIRGFVSLPSKDEVREFSLDCNKESTFKVANTIWDMID 201
            + I+ EV  L   + ++  VE    L +E++E     + +AA  IR  T +V  A+   +AF AA+  +  +  ALE E+  + + L     D     + V  +EA+    EE+ K    A  +  P+++H+LSLY+ I+ I+W  E  +    + +G V  P +  V++F +D   ++ F+VAN +WD+I+
Sbjct:   69 QQILEEVSVLAHEKTELEAVEGAGKLAREVRERYARAKDNAAEAIRKCTQDVTDAREKAEAF-AAQTPTSPEIEALEQERIALLKRLEDANEDQDALLKLVADLEAKVARTEEELKLARQAEDKALPKMMHSLSLYSTISKIKWDLESSNPRKGVFQGTVVNPDEGYVKDFRIDEGSKTPFQVANQLWDIIN 259          
BLAST of NO09G02160 vs. NCBI_GenBank
Match: XP_013411178.1 (kinetochore protein Spc24 [Lingula anatina] >XP_013411179.1 kinetochore protein Spc24 [Lingula anatina] >XP_013411180.1 kinetochore protein Spc24 [Lingula anatina])

HSP 1 Score: 71.6 bits (174), Expect = 3.100e-9
Identity = 52/197 (26.40%), Postives = 110/197 (55.84%), Query Frame = 0
Query:    7 EETRSIMAEVQELFAGREDMNTVEEIRALQKEMKEAVQSREASAAACIRGLTAEVGVAQAVVDAFPA--ARDASKAQKAA-LEGEKEHVSEVLASLTTDIAEARQNVECMEAERIDVEEKAKGVEHASSEQAPRVLHALSLYANITGIRWKYEDDENSHLIRGFVSLPSKDEVREFSLDCNKESTFKVANTIWDMID 201
            EE RSI++E+  +    E++  ++    +  ++ +  +++E +    I  L+  +   +++V    +  A D    + AA +E  ++H S V   L T     + N+E M++ + DVE K + V+H ++E  P++ H ++LY +I+ IRW+Y+ + +   I+G+  L +K +V+ FS++  + S F + N +WD+++
Sbjct:    5 EEARSIVSELITVLNQDEELTKLQAAGEIVDKINQLRRAQEEAIRNDIHALSTMIDEEESLVAGSQSDEALDKGMGELAAQMEQAQQHKSHVAQELAT----TKGNIEQMKSLKEDVEAKKEQVKHKTTEALPKLRHDVNLYHSISNIRWQYDCEPDE--IKGY--LCNKHDVKPFSMNSKQNSQFFIVNYLWDLME 193          
BLAST of NO09G02160 vs. NCBI_GenBank
Match: XP_015758940.1 (PREDICTED: kinetochore protein Spc24-like [Acropora digitifera])

HSP 1 Score: 70.5 bits (171), Expect = 6.900e-9
Identity = 51/187 (27.27%), Postives = 100/187 (53.48%), Query Frame = 0
Query:   15 EVQELFAGREDMNTVEEIRALQKEMKEAVQSREASAAACIRGLTAEVGVAQAVVDAFPAAR-DASKAQKAALEGEKEHVSEVLASLTTDIAEARQNVECMEAERIDVEEKAKGVEHASSEQAPRVLHALSLYANITGIRWKYEDDENSHLIRGFVSLPSKDEVREFSLDCNKESTFKVANTIWDMID 201
            EV  + +  ED  ++E+I     E++E     E   +  +  L+    + QA  +   A++ D S  +  +L+G+K+  ++ +  L  D+    QN+   E E  D++ +A  V+    E  P+  +  SLY NI+ IRW YE +E+   ++GF++  + ++V+ F L+ ++ S + +AN +WD++D
Sbjct:    9 EVITVLSNAEDEESLEKIAQNFDEVQEICLQEEGDFSNTLLALSK---ILQAQEEKNKASKLDESSNRMDSLQGDKKTTTQFIEKLEDDVKLLEQNINARENEIQDLQVRAAEVKENQEEVLPKKRYIFSLYTNISHIRWDYECEEDH--VKGFMA--NLNDVKPFCLNKSENSAYDIANRLWDIMD 188          
BLAST of NO09G02160 vs. NCBI_GenBank
Match: XP_005651962.1 (hypothetical protein COCSUDRAFT_64220 [Coccomyxa subellipsoidea C-169] >EIE27418.1 hypothetical protein COCSUDRAFT_64220 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 67.0 bits (162), Expect = 7.600e-8
Identity = 50/198 (25.25%), Postives = 93/198 (46.97%), Query Frame = 0
Query:    3 QMSWEETRSIMAEVQELFAGREDMNTVEEIRALQKEMKEAVQSREASAAACIRGLTAEVGVAQAVV-DAFPAARDASKAQKAALEGEKEHVSEVLASLTTDIAEARQNVECMEAERIDVEEKAKGVEHASSEQAPRVLHALSLYANITGIRWKYEDDENSHLIRGFVSLPSKDEVREFSLDCNKESTFKVANTIWDMI 200
            Q  + E  +++  ++  ++ R+D+N V  I+ L+ E+ E    RE +  A ++ L  E    +AV+ +A P +  A + ++  L   +      +  L  +    +               +++ VE   +E  PR  H LSLY +IT I W  +++ N   I G V  P+  ++R   +D + +S F V N+IWD +
Sbjct:    6 QERFREHVNVVDALRANYSSRDDLNRVSAIQQLEAELSELCSRRETNVQAVVKELCRETEAVEAVLNEASPPSAHAGRMKE--LLSARTSTHSAVEQLNKEKRFLQDQQTSXXXXXXXXXLRSERVEELVTETEPRTRHELSLYVHITNISWHLQNNHNR--ISGKVHRPATKDIRHIDIDPSDKSQFDVVNSIWDTL 199          
BLAST of NO09G02160 vs. NCBI_GenBank
Match: XP_002501061.1 (predicted protein [Micromonas commoda] >ACO62319.1 predicted protein [Micromonas commoda])

HSP 1 Score: 66.6 bits (161), Expect = 9.900e-8
Identity = 49/200 (24.50%), Postives = 96/200 (48.00%), Query Frame = 0
Query:    2 PQMSWEETRSIMAEVQELFAGREDMNTVEEIRALQKEMKEAVQSREASAAACIRGLTAEVGVAQAVVDAFPAARDASKAQK-AALEGEKEHVSEVLASLTTDIAEARQNVECMEAERIDVEEKAKGVEHASSEQAPRVLHALSLYANITGIRWKYEDDENSHLIRGFVSLPSKDEVREFSLDCNKESTFKVANTIWDMID 201
            P+ S+ E   ++ E++ ++A  ED   V  +    KE+++  + REA     I+ +     VA A   A P+   +   ++ A +E EK    E L  +  +          ++++  +++ K + V+    +  PR  H LSLYA+I+ I W+YE  +    I+G V+     +++         S +++AN +W++ID
Sbjct:    3 PEASFAECHELIEEMRRIYATDEDALKVRALNQQFKEVRKLCEDREAHMQTVIKEMVKR--VADAEKRATPSESPSEHQKRIAQVEAEKRAAGEFLTHMEAEAQXXXXXXXXLKSQSANLKVKKQEVDAIEMDDVPRAKHELSLYAHISKISWQYETTDR---IKGRVNAHEGKDLQVIDYAVGDRSEYQLANDLWNLID 197          
BLAST of NO09G02160 vs. NCBI_GenBank
Match: GAX92840.1 (Hypothetical protein PINS_000738 [Pythium insidiosum])

HSP 1 Score: 66.6 bits (161), Expect = 9.900e-8
Identity = 49/199 (24.62%), Postives = 90/199 (45.23%), Query Frame = 0
Query:    4 MSWEETRSIMAEVQELFA--GREDMNTVEEIRALQKEMKEAVQSREASAAACIRGLTAEVGVAQAVVDAFPAARDASKAQKAALEGEKEHVSEVLASLTTDIAEARQNVECMEAERIDVEEKAKGVEHASSEQAPRVLHALSLYANITGIRWKYEDDENSHLIRGFVSLPSKDEVREFSLDCNKESTFKVANTIWDMID 201
            +SW E + I  E+++L+    ++D   +  +   +KE+  A Q ++ +A   +  L   V   Q    +    RDA  ++   LE  K  +   L  L  D   +++++E +        ++A   +     +  R  H +SLYA +TGI+W +  D     I G + +PS   +  F +D    + F+ AN +W  ID
Sbjct:   32 LSWPEVQEICKELEQLYRKDAQKDAARIRALARKRKEISAACQGKKNTAQQQLNQLLGSVRDWQEQSSSAKTRRDALSSKLQELEALKREMVAQLERLRVDEQSSKESLEQLLDTYESTRQEALKFQMEHRNEVDRAKHFMSLYAAVTGIKWDFSGDS----IAGEIHVPSTQNIVPFEIDPANSNEFETANALWTKID 226          
BLAST of NO09G02160 vs. NCBI_GenBank
Match: XP_015758941.1 (PREDICTED: kinetochore protein Spc24-like [Acropora digitifera])

HSP 1 Score: 65.1 bits (157), Expect = 2.900e-7
Identity = 46/186 (24.73%), Postives = 97/186 (52.15%), Query Frame = 0
Query:   15 EVQELFAGREDMNTVEEIRALQKEMKEAVQSREASAAACIRGLTAEVGVAQAVVDAFPAARDASKAQKAALEGEKEHVSEVLASLTTDIAEARQNVECMEAERIDVEEKAKGVEHASSEQAPRVLHALSLYANITGIRWKYEDDENSHLIRGFVSLPSKDEVREFSLDCNKESTFKVANTIWDMID 201
            EV  + +  ED  ++E+I     E++E     E   +  +  L+  +   +  + A  +  D S  +  +L+ +K+  ++ +  +  D+    +N+   E E  D++ +A  V+    E  P+  +  SLY NI+ IRW YE +E+   ++GF++  + ++V+ F L+ ++ S + +AN +WD++D
Sbjct:    9 EVITVLSNAEDEESLEKIAQNFDEVQEIRLQEEGDFSNTLLALSKILQAQEVKIKA--SKLDESSNRMNSLQDDKKTTTQFIEKIEDDVKLLEENINAKENEIQDLQVRAAEVKENQEEVLPKKRYIFSLYTNISHIRWDYECEEDH--VKGFMA--NLNDVKPFCLNKSENSAYDIANRLWDIMD 188          
The following BLAST results are available for this feature:
BLAST of NO09G02160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 11
Match NameE-valueIdentityDescription
EWM27534.11.600e-7774.63Kinetochore-Ndc80 subunit Spc24 [Nannochloropsis g... [more]
GAQ88434.14.300e-1125.39hypothetical protein KFL_004280030 [Klebsormidium ... [more]
XP_011396993.12.800e-1027.18hypothetical protein F751_1372 [Auxenochlorella pr... [more]
GBG33328.16.200e-1029.17Kinetochore protein Spc24 [Aurantiochytrium sp. FC... [more]
XP_013411178.13.100e-926.40kinetochore protein Spc24 [Lingula anatina] >XP_01... [more]
XP_015758940.16.900e-927.27PREDICTED: kinetochore protein Spc24-like [Acropor... [more]
XP_005651962.17.600e-825.25hypothetical protein COCSUDRAFT_64220 [Coccomyxa s... [more]
XP_002501061.19.900e-824.50predicted protein [Micromonas commoda] >ACO62319.1... [more]
GAX92840.19.900e-824.62Hypothetical protein PINS_000738 [Pythium insidios... [more]
XP_015758941.12.900e-724.73PREDICTED: kinetochore protein Spc24-like [Acropor... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010732NSK010732Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G02160.1NO09G02160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588772gene_4335Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100015g56gene2984Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G02160.1NO09G02160.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G02160 ID=NO09G02160|Name=NO09G02160|organism=Nannochloropsis oceanica|type=gene|length=1162bp
ATGCCCCAAATGAGCTGGGAAGAGACGCGGAGCATCATGGCCGAGGTCCA
GGAGCTCTTTGCGGGTCGCGAGgtaaggcactaactgaagcgcgtgaatg
gggagggaacgcagtaggccttcgctctctcccattatcatgatcatcag
ccaaagcaagaagtccacgacacacgagcggtggtatcatgcactacggc
cacccgtccccaacgacctgcgttcttcttcgcgcacccgtgcttcccgc
accttgtcgcggcccttgccctcgtctgcatccctgccgctccctcaatc
ctctctcctctctcccccatcaccacctctccgccacagGATATGAACAC
CGTCGAAGAGATCCGTGCCCTGCAAAAAGAAATGAAGGAAGCTGTGCAAT
CCCGCGAGGCTTCCGCAGCTGCGTGCATCCGCGGGTTGACCGCGGAAGTG
GGCGTGGCTCAAGCAGTGGTGGATGCCTTCCCCGCTGCCCGAGACGCAAG
CAAGGCGCAAAAAGCGGCATTGGAGGGGGAGAAGGAGCATGTGTCCGAGG
TGCTGGCCAGCTTGACTACAGACATAGCGGAGGCGAGGCAGAATGTGGAG
TGTATGGAAGCGGAGCGGATTGATGTGGAGGAGAAGGCGAAGGGGGTGGA
GCACGCGAGCTCAGAGCAGGCCCCGCGGGTATTGCACGCTTTGAGTTTGT
ACGCGAACATAACGGGGATTCGGTGGAAGTACGAGGATGACGAGAACAGC
CACTTGATTCGGGGATgtgagtatgggagggatggggggagggagggagg
gagggagggagggcgggaggtgcatcgtgtgtgtgtgagagggagtgggt
atgggtgagagagcgtgtgtgtgtatgtgtatatatgcttgtgcgtttcc
tgttcccaccccctacagtcgtctttctgtccagtaagatgagatgtggg
agttccctagcctgctccaagaggagcacgtagaaagtcgccgataccac
ttcacactcacccttcttccctccctcccttcctccctccctcccctgta
cacagTCGTCTCTCTGCCCAGCAAGGACGAGGTGCGTGAGTTCTCTCTAG
ACTGCAACAAGGAAAGCACCTTCAAAGTCGCCAATACCATTTGGGACATG
ATCGATCCTTGA
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protein sequence of NO09G02160.1

>NO09G02160.1-protein ID=NO09G02160.1-protein|Name=NO09G02160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MPQMSWEETRSIMAEVQELFAGREDMNTVEEIRALQKEMKEAVQSREASA
AACIRGLTAEVGVAQAVVDAFPAARDASKAQKAALEGEKEHVSEVLASLT
TDIAEARQNVECMEAERIDVEEKAKGVEHASSEQAPRVLHALSLYANITG
IRWKYEDDENSHLIRGFVSLPSKDEVREFSLDCNKESTFKVANTIWDMID
P*
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Synonyms
Publications