NO09G02110, NO09G02110 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO09G02110 vs. NCBI_GenBank
Match: EWM27596.1 (ring u-box domain-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 301.6 bits (771), Expect = 3.700e-78 Identity = 191/415 (46.02%), Postives = 215/415 (51.81%), Query Frame = 0 Query: 1 MGNRSSAYPADHLASTRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYSLPQDQTTCPQCQRVLLIPHNAPLFRCPCGVLFRTETLQQEQGHRRSLFERSGSGLLGHDGLMGRAVICRRCRRVSMLPQTESGDSISICRCGSPALPLNDMVMSLLAEGELGLLIGGRN--EGSLSRREEMEGASKDLIGILPTCKFSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAEKNDSFAAATATDTAWSTCLPMEGGEGASALPGKGKDSGGNGRCCNSKRELREHSSCSTGGE-------GGKIATSTETETPIPKQLDSHNDDLSCRICFEDYVDGDELRVLPCFHRFHTGCSFDWLTRKKTCPLCMTSIDVIMRRPEDLMGGGGRG 407 MGNR++ YPA+H +STR G S P QT CPQCQRVLLIP NAPLFRCPCGVLFRTETL HR FER SGLLG GLMGR+VICRRCRR+SMLPQ S D I+IC CGSPALPLNDMVMSLLAEGELGLL GR+ +L R+ ++EGAS+DLI +LPTC FSA AAA A P G AS L D G CC +++ +C E G A TP K++DSH+DD+SCRIC EDY +GD LRVLPCFHRFH CS DWL R+KTCPLC T IDVIMRRPED G G Sbjct: 1 MGNRNT-YPAEHHSSTRS---TRSASPSSTAAESQGSGRRSSGERPNGNFLYQSTSAAGTSSPSHQTMCPQCQRVLLIPPNAPLFRCPCGVLFRTETLDP---HRS--FERPTSGLLGATGLMGRSVICRRCRRLSMLPQDGSSDGIAICPCGSPALPLNDMVMSLLAEGELGLLGRGRHGRRRALFRQGDVEGASEDLIDLLPTCTFSAE-----------------------------------------------------AAARAATARLGGKSPAPSGVQASVL-----DEGAGKNCCGERKK-----TCHVPPEDFHMLKAGSIKAAEVPGSTPPLKKVDSHDDDVSCRICLEDYAEGDRLRVLPCFHRFHAECSSDWLKRRKTCPLCTTCIDVIMRRPEDWSEEGVSG 343
BLAST of NO09G02110 vs. NCBI_GenBank
Match: XP_020965985.1 (LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase At1g63170 [Arachis ipaensis]) HSP 1 Score: 75.5 bits (184), Expect = 4.300e-10 Identity = 36/84 (42.86%), Postives = 42/84 (50.00%), Query Frame = 0 Query: 318 EGGKIATSTETETPIPKQLDSHNDDLSCRICFEDYVDGDELRVLPCFHRFHTGCSFDWLTRKKTCPLCMTSIDVIMRRPEDLMG 402 +GG +A TE E PI +D +C IC YVD DELR LPCFH FH GC WL +CPLC + MG Sbjct: 321 DGGILAAGTEKERPI------SGEDSACCICLAKYVDNDELRELPCFHIFHVGCIDKWLKINASCPLCKYEVGTNNEGAHSAMG 398
BLAST of NO09G02110 vs. NCBI_GenBank
Match: XP_015938455.2 (LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase At1g63170 [Arachis duranensis]) HSP 1 Score: 75.5 bits (184), Expect = 4.300e-10 Identity = 36/84 (42.86%), Postives = 42/84 (50.00%), Query Frame = 0 Query: 318 EGGKIATSTETETPIPKQLDSHNDDLSCRICFEDYVDGDELRVLPCFHRFHTGCSFDWLTRKKTCPLCMTSIDVIMRRPEDLMG 402 +GG +A TE E PI +D +C IC YVD DELR LPCFH FH GC WL +CPLC + MG Sbjct: 286 DGGILAAGTEKERPI------SGEDSACCICLAKYVDNDELRELPCFHIFHVGCIDKWLKINASCPLCKYEVGTNNEGAHSAMG 363
BLAST of NO09G02110 vs. NCBI_GenBank
Match: XP_021901226.1 (E3 ubiquitin-protein ligase At1g12760-like [Carica papaya]) HSP 1 Score: 74.7 bits (182), Expect = 7.400e-10 Identity = 34/66 (51.52%), Postives = 37/66 (56.06%), Query Frame = 0 Query: 324 TSTETETPIPKQLDSHNDDLSCRICFEDYVDGDELRVLPCFHRFHTGCSFDWLTRKKTCPLCMTSI 390 TS E E P +L H DD C IC YVDG EL +LPC H FH GC WL TCPLC +I Sbjct: 260 TSAELEKNDPNELLLHPDDSECCICLCRYVDGTELHILPCNHHFHCGCIIKWLRINATCPLCKFNI 325
BLAST of NO09G02110 vs. NCBI_GenBank
Match: GAX82721.1 (hypothetical protein CEUSTIGMA_g10147.t1 [Chlamydomonas eustigma]) HSP 1 Score: 74.7 bits (182), Expect = 7.400e-10 Identity = 28/66 (42.42%), Postives = 43/66 (65.15%), Query Frame = 0 Query: 320 GKIATSTETETPIPKQLDSHNDDLSCRICFEDYVDGDELRVLPCFHRFHTGCSFDWLTRKKTCPLC 386 G ++S+E E P+P + +C +C EDYV+G+++RVLPC HRFH C WL+ ++ CP+C Sbjct: 316 GSSSSSSEHEWPLPAGAHAGETKRTCAVCLEDYVEGEKVRVLPCLHRFHMQCVDQWLSTRRLCPVC 381
BLAST of NO09G02110 vs. NCBI_GenBank
Match: OZJ05599.1 (hypothetical protein BZG36_01484 [Bifiguratus adelaidae]) HSP 1 Score: 74.3 bits (181), Expect = 9.600e-10 Identity = 32/57 (56.14%), Postives = 37/57 (64.91%), Query Frame = 0 Query: 334 KQLDSHNDDLSCRICFEDYVDGDELRVLPCFHRFHTGCSFDWL-TRKKTCPLCMTSI 390 K+ N+ C IC EDY+D DELR+LPC H FHTGC WL TRKK CP+C I Sbjct: 883 KEKRKDNEPEECAICLEDYLDEDELRILPCKHEFHTGCIDGWLTTRKKFCPICKRDI 939
BLAST of NO09G02110 vs. NCBI_GenBank
Match: XP_004355249.1 (transmembrane protein [Cavenderia fasciculata] >EGG16775.1 transmembrane protein [Cavenderia fasciculata]) HSP 1 Score: 73.6 bits (179), Expect = 1.600e-9 Identity = 27/51 (52.94%), Postives = 34/51 (66.67%), Query Frame = 0 Query: 340 NDDLSCRICFEDYVDGDELRVLPCFHRFHTGCSFDWLTRKKTCPLCMTSID 391 NDD SC IC DYVDG+++R+LPC H +H C WL + K+CP C ID Sbjct: 442 NDDCSCAICLTDYVDGEKIRILPCKHHYHLNCIDRWLIQNKSCPFCKRDID 492
BLAST of NO09G02110 vs. NCBI_GenBank
Match: EPB86115.1 (hypothetical protein HMPREF1544_07103 [Mucor circinelloides f. circinelloides 1006PhL]) HSP 1 Score: 73.6 bits (179), Expect = 1.600e-9 Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = 0 Query: 340 NDDLSCRICFEDYVDGDELRVLPCFHRFHTGCSFDWL-TRKKTCPLCMTSIDVIMRRP 397 N+ C IC EDYV+G+ELRVLPC H FHT C WL T+KK CP+C I I+ +P Sbjct: 207 NEAEECAICLEDYVNGEELRVLPCKHDFHTFCVDAWLTTQKKFCPICKRDITFIIEKP 264
BLAST of NO09G02110 vs. NCBI_GenBank
Match: XP_010421335.1 (PREDICTED: E3 ubiquitin-protein ligase MBR1-like [Camelina sativa]) HSP 1 Score: 73.2 bits (178), Expect = 2.100e-9 Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 0 Query: 340 NDDLSCRICFEDYVDGDELRVLPCFHRFHTGCSFDWLTRKKTCPLCMTSIDVIMRRP 397 +DD+ C IC E+YVDGDE+ LPC H++H C+ WL K CP+C TS + +P Sbjct: 478 DDDVKCSICQEEYVDGDEVGTLPCQHKYHVSCAQQWLRMKNWCPICKTSAEESQPQP 534
BLAST of NO09G02110 vs. NCBI_GenBank
Match: XP_010454816.1 (PREDICTED: E3 ubiquitin-protein ligase MBR1-like [Camelina sativa]) HSP 1 Score: 73.2 bits (178), Expect = 2.100e-9 Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 0 Query: 340 NDDLSCRICFEDYVDGDELRVLPCFHRFHTGCSFDWLTRKKTCPLCMTSIDVIMRRP 397 +DD+ C IC E+YVDGDE+ LPC H++H C+ WL K CP+C TS + +P Sbjct: 477 DDDVKCSICQEEYVDGDEVGTLPCQHKYHVSCAQQWLRMKNWCPICKTSAEESQPQP 533 The following BLAST results are available for this feature:
BLAST of NO09G02110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO09G02110 ID=NO09G02110|Name=NO09G02110|organism=Nannochloropsis oceanica|type=gene|length=1909bpback to top protein sequence of NO09G02110.1 >NO09G02110.1-protein ID=NO09G02110.1-protein|Name=NO09G02110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=409bpback to top Synonyms
Publications
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