NO09G02110, NO09G02110 (gene) Nannochloropsis oceanica

Overview
NameNO09G02110
Unique NameNO09G02110
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1909
Alignment locationchr9:647314..649222 +

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Properties
Property NameValue
DescriptionRing u-box domain-containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:647314..649222 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
Homology
BLAST of NO09G02110 vs. NCBI_GenBank
Match: EWM27596.1 (ring u-box domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 301.6 bits (771), Expect = 3.700e-78
Identity = 191/415 (46.02%), Postives = 215/415 (51.81%), Query Frame = 0
Query:    1 MGNRSSAYPADHLASTRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYSLPQDQTTCPQCQRVLLIPHNAPLFRCPCGVLFRTETLQQEQGHRRSLFERSGSGLLGHDGLMGRAVICRRCRRVSMLPQTESGDSISICRCGSPALPLNDMVMSLLAEGELGLLIGGRN--EGSLSRREEMEGASKDLIGILPTCKFSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAEKNDSFAAATATDTAWSTCLPMEGGEGASALPGKGKDSGGNGRCCNSKRELREHSSCSTGGE-------GGKIATSTETETPIPKQLDSHNDDLSCRICFEDYVDGDELRVLPCFHRFHTGCSFDWLTRKKTCPLCMTSIDVIMRRPEDLMGGGGRG 407
            MGNR++ YPA+H +STR                                         G S P  QT CPQCQRVLLIP NAPLFRCPCGVLFRTETL     HR   FER  SGLLG  GLMGR+VICRRCRR+SMLPQ  S D I+IC CGSPALPLNDMVMSLLAEGELGLL  GR+    +L R+ ++EGAS+DLI +LPTC FSA                                                      AAA A         P   G  AS L     D G    CC  +++     +C    E       G   A      TP  K++DSH+DD+SCRIC EDY +GD LRVLPCFHRFH  CS DWL R+KTCPLC T IDVIMRRPED    G  G
Sbjct:    1 MGNRNT-YPAEHHSSTRS---TRSASPSSTAAESQGSGRRSSGERPNGNFLYQSTSAAGTSSPSHQTMCPQCQRVLLIPPNAPLFRCPCGVLFRTETLDP---HRS--FERPTSGLLGATGLMGRSVICRRCRRLSMLPQDGSSDGIAICPCGSPALPLNDMVMSLLAEGELGLLGRGRHGRRRALFRQGDVEGASEDLIDLLPTCTFSAE-----------------------------------------------------AAARAATARLGGKSPAPSGVQASVL-----DEGAGKNCCGERKK-----TCHVPPEDFHMLKAGSIKAAEVPGSTPPLKKVDSHDDDVSCRICLEDYAEGDRLRVLPCFHRFHAECSSDWLKRRKTCPLCTTCIDVIMRRPEDWSEEGVSG 343          
BLAST of NO09G02110 vs. NCBI_GenBank
Match: XP_020965985.1 (LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase At1g63170 [Arachis ipaensis])

HSP 1 Score: 75.5 bits (184), Expect = 4.300e-10
Identity = 36/84 (42.86%), Postives = 42/84 (50.00%), Query Frame = 0
Query:  318 EGGKIATSTETETPIPKQLDSHNDDLSCRICFEDYVDGDELRVLPCFHRFHTGCSFDWLTRKKTCPLCMTSIDVIMRRPEDLMG 402
            +GG +A  TE E PI        +D +C IC   YVD DELR LPCFH FH GC   WL    +CPLC   +          MG
Sbjct:  321 DGGILAAGTEKERPI------SGEDSACCICLAKYVDNDELRELPCFHIFHVGCIDKWLKINASCPLCKYEVGTNNEGAHSAMG 398          
BLAST of NO09G02110 vs. NCBI_GenBank
Match: XP_015938455.2 (LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase At1g63170 [Arachis duranensis])

HSP 1 Score: 75.5 bits (184), Expect = 4.300e-10
Identity = 36/84 (42.86%), Postives = 42/84 (50.00%), Query Frame = 0
Query:  318 EGGKIATSTETETPIPKQLDSHNDDLSCRICFEDYVDGDELRVLPCFHRFHTGCSFDWLTRKKTCPLCMTSIDVIMRRPEDLMG 402
            +GG +A  TE E PI        +D +C IC   YVD DELR LPCFH FH GC   WL    +CPLC   +          MG
Sbjct:  286 DGGILAAGTEKERPI------SGEDSACCICLAKYVDNDELRELPCFHIFHVGCIDKWLKINASCPLCKYEVGTNNEGAHSAMG 363          
BLAST of NO09G02110 vs. NCBI_GenBank
Match: XP_021901226.1 (E3 ubiquitin-protein ligase At1g12760-like [Carica papaya])

HSP 1 Score: 74.7 bits (182), Expect = 7.400e-10
Identity = 34/66 (51.52%), Postives = 37/66 (56.06%), Query Frame = 0
Query:  324 TSTETETPIPKQLDSHNDDLSCRICFEDYVDGDELRVLPCFHRFHTGCSFDWLTRKKTCPLCMTSI 390
            TS E E   P +L  H DD  C IC   YVDG EL +LPC H FH GC   WL    TCPLC  +I
Sbjct:  260 TSAELEKNDPNELLLHPDDSECCICLCRYVDGTELHILPCNHHFHCGCIIKWLRINATCPLCKFNI 325          
BLAST of NO09G02110 vs. NCBI_GenBank
Match: GAX82721.1 (hypothetical protein CEUSTIGMA_g10147.t1 [Chlamydomonas eustigma])

HSP 1 Score: 74.7 bits (182), Expect = 7.400e-10
Identity = 28/66 (42.42%), Postives = 43/66 (65.15%), Query Frame = 0
Query:  320 GKIATSTETETPIPKQLDSHNDDLSCRICFEDYVDGDELRVLPCFHRFHTGCSFDWLTRKKTCPLC 386
            G  ++S+E E P+P    +     +C +C EDYV+G+++RVLPC HRFH  C   WL+ ++ CP+C
Sbjct:  316 GSSSSSSEHEWPLPAGAHAGETKRTCAVCLEDYVEGEKVRVLPCLHRFHMQCVDQWLSTRRLCPVC 381          
BLAST of NO09G02110 vs. NCBI_GenBank
Match: OZJ05599.1 (hypothetical protein BZG36_01484 [Bifiguratus adelaidae])

HSP 1 Score: 74.3 bits (181), Expect = 9.600e-10
Identity = 32/57 (56.14%), Postives = 37/57 (64.91%), Query Frame = 0
Query:  334 KQLDSHNDDLSCRICFEDYVDGDELRVLPCFHRFHTGCSFDWL-TRKKTCPLCMTSI 390
            K+    N+   C IC EDY+D DELR+LPC H FHTGC   WL TRKK CP+C   I
Sbjct:  883 KEKRKDNEPEECAICLEDYLDEDELRILPCKHEFHTGCIDGWLTTRKKFCPICKRDI 939          
BLAST of NO09G02110 vs. NCBI_GenBank
Match: XP_004355249.1 (transmembrane protein [Cavenderia fasciculata] >EGG16775.1 transmembrane protein [Cavenderia fasciculata])

HSP 1 Score: 73.6 bits (179), Expect = 1.600e-9
Identity = 27/51 (52.94%), Postives = 34/51 (66.67%), Query Frame = 0
Query:  340 NDDLSCRICFEDYVDGDELRVLPCFHRFHTGCSFDWLTRKKTCPLCMTSID 391
            NDD SC IC  DYVDG+++R+LPC H +H  C   WL + K+CP C   ID
Sbjct:  442 NDDCSCAICLTDYVDGEKIRILPCKHHYHLNCIDRWLIQNKSCPFCKRDID 492          
BLAST of NO09G02110 vs. NCBI_GenBank
Match: EPB86115.1 (hypothetical protein HMPREF1544_07103 [Mucor circinelloides f. circinelloides 1006PhL])

HSP 1 Score: 73.6 bits (179), Expect = 1.600e-9
Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = 0
Query:  340 NDDLSCRICFEDYVDGDELRVLPCFHRFHTGCSFDWL-TRKKTCPLCMTSIDVIMRRP 397
            N+   C IC EDYV+G+ELRVLPC H FHT C   WL T+KK CP+C   I  I+ +P
Sbjct:  207 NEAEECAICLEDYVNGEELRVLPCKHDFHTFCVDAWLTTQKKFCPICKRDITFIIEKP 264          
BLAST of NO09G02110 vs. NCBI_GenBank
Match: XP_010421335.1 (PREDICTED: E3 ubiquitin-protein ligase MBR1-like [Camelina sativa])

HSP 1 Score: 73.2 bits (178), Expect = 2.100e-9
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 0
Query:  340 NDDLSCRICFEDYVDGDELRVLPCFHRFHTGCSFDWLTRKKTCPLCMTSIDVIMRRP 397
            +DD+ C IC E+YVDGDE+  LPC H++H  C+  WL  K  CP+C TS +    +P
Sbjct:  478 DDDVKCSICQEEYVDGDEVGTLPCQHKYHVSCAQQWLRMKNWCPICKTSAEESQPQP 534          
BLAST of NO09G02110 vs. NCBI_GenBank
Match: XP_010454816.1 (PREDICTED: E3 ubiquitin-protein ligase MBR1-like [Camelina sativa])

HSP 1 Score: 73.2 bits (178), Expect = 2.100e-9
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 0
Query:  340 NDDLSCRICFEDYVDGDELRVLPCFHRFHTGCSFDWLTRKKTCPLCMTSIDVIMRRP 397
            +DD+ C IC E+YVDGDE+  LPC H++H  C+  WL  K  CP+C TS +    +P
Sbjct:  477 DDDVKCSICQEEYVDGDEVGTLPCQHKYHVSCAQQWLRMKNWCPICKTSAEESQPQP 533          
The following BLAST results are available for this feature:
BLAST of NO09G02110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27596.13.700e-7846.02ring u-box domain-containing protein [Nannochlorop... [more]
XP_020965985.14.300e-1042.86LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase A... [more]
XP_015938455.24.300e-1042.86LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase A... [more]
XP_021901226.17.400e-1051.52E3 ubiquitin-protein ligase At1g12760-like [Carica... [more]
GAX82721.17.400e-1042.42hypothetical protein CEUSTIGMA_g10147.t1 [Chlamydo... [more]
OZJ05599.19.600e-1056.14hypothetical protein BZG36_01484 [Bifiguratus adel... [more]
XP_004355249.11.600e-952.94transmembrane protein [Cavenderia fasciculata] >EG... [more]
EPB86115.11.600e-955.17hypothetical protein HMPREF1544_07103 [Mucor circi... [more]
XP_010421335.12.100e-947.37PREDICTED: E3 ubiquitin-protein ligase MBR1-like [... [more]
XP_010454816.12.100e-947.37PREDICTED: E3 ubiquitin-protein ligase MBR1-like [... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010725NSK010725Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G02110.1NO09G02110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588796gene_4339Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100015g61gene2979Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G02110.1NO09G02110.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G02110 ID=NO09G02110|Name=NO09G02110|organism=Nannochloropsis oceanica|type=gene|length=1909bp
ACGGCACAAACCATACGCCAACACCACGCACCACAGCATGGGCAACCGGA
GCAGTGCATATCCTGCAGACCACCTGGCGgtaagtatgtctagtggaagg
gcacagattgatgggatgtgaaaacagtggcattaaaggggctccctctt
tgtcatgcatttccatcatcccctcctcaccacgtcttctcgctacctgc
ttacacccagTCCACAAGAGGCGGTGCGTCGTCTTCATCTGCATCGACTG
GGGCGGCCTCAAGGAGCAACAGCAGCAGCGGCACTAGCAATCAAGGCCAT
TTCCATCGAGCCAGCAGCACCAGCAGTAGCAACACCAGCACCGGGTACAG
CCTCCCGCAAGACCAAACCACCTGCCCACAATGTCAACGCGTCCTGCTCA
TCCCGCACAATGCCCCCCTTTTCCGATGTCCGTGCGGTGTGCTATTTCGA
ACCGAGACGTTGCAACAAGAACAAGGGCATCGTCGCAGTCTATTTGAGCG
GTCGGGGAGCGGGCTCCTGGGACATGATGGCCTGATGGGCCGTGCTGTGA
TCTGCCGTCGATGTCGCCGCGTTTCCATGCTCCCACAAACTGAGTCAGGA
GACAGTATATCTATCTGCAGGTGCGGCTCCCCGGCGTTGCCTTTGAATGA
TATGGTCATGTCTTTATTGGCGGAGGGGGAATTGGGCTTACTCATAGGAG
GGAGGAATGAAGGGTCTCTCTCACGGAGGGAAGAGATGGAGGGGGCATCC
AAAGACTTGATTGGAATCTTGCCCACATGCAAATTCTCGGCGGCAGCGGC
GAGAGCGGCGAGTGCCCGTGCGACTGCGACTGCGACTGCGACCGCAGAGG
AGTCTGCTGCGCCTGTGAGTAATAGTAGTGTGGCTAAGGGAGATGATGTG
GAGAAGAGAAAAGAGAGGGAGGGGGAGAAGGGAGCAGAGAAAAATGACTC
TTTTGCTGCTGCCACCGCTACGGATACTGCGTGGTCTACATGCTTACCGA
TGGAGGGAGGAGAAGGAGCATCAGCATTGCCAGGAAAGGGAAAAGACAGC
GGTGGTAATGGTAGGTGTTGTAATAGCAAAAGAGAACTACGAGAACACAG
CTCGTGTTCTACAGGAGGGGAAGGAGGAAAGATAGCAACGTCCACAGAAA
CAGAGACACCGATACCCAAGCAGTTGGATTCGCACAATGATGATTTGTCT
TGTCGGATTTGTTTCGAGGACTACGTAGATGGGGATGAATTAAGGGTGTT
GCCGTGTTTTCATCGGTTCCACACCGGTTGCTCTTTTGATTGGCTGACCA
GGAAGAAGACATGCCCGTTGTGTATGACGAGTATCGACGTGATCATGCGG
AGGCCTGAAGATCTGATGGGTGGTGGAGGAAGAGGTGAGGGATGAGCGAG
GGAGGGAGGAAAGATAGGAGGGCGATGTGGGAAGGCAGAAGACATATCTG
TTGAATGGCGTGTATTGTTAGATAGTTTCTTGATCTTATCATGCGGAGCT
TTGAAAGCCAGATTGTGGGTTACGGTGGAGGTAAGTTGAAATAAGAAGGG
AAGAATTGTTGGAAGAGGAGGCAGGAAGCACCGTCGTTAGCTTGCCTCTC
CTTCTGCTGTGCACAAGGACGATCAAGAAAAAAATAAGACAAATTTCACA
GGTGCGAGTGAATATTAAGAATAGGAGCCACAGAAATGACAGAAATATTG
TTTGTAAATGCAAAGGAGGCAACAAGAGAAGAGTCGGCGAGAGAAATAAG
GTATGGCATGAAGCAACACAAGCAGCAGCAGCAACAGATTAGCTGCATTA
GCAGCAGCAGCAGCAACAGAGATGTCACCAAGACAGTTAACTCGAAAGTT
ACGAAGGAAGCAAGAGATGCGAAGAAGAAATGTGAAGCCTAAAGCTGCAG
AGAAACGGC
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protein sequence of NO09G02110.1

>NO09G02110.1-protein ID=NO09G02110.1-protein|Name=NO09G02110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=409bp
MGNRSSAYPADHLASTRGGASSSSASTGAASRSNSSSGTSNQGHFHRASS
TSSSNTSTGYSLPQDQTTCPQCQRVLLIPHNAPLFRCPCGVLFRTETLQQ
EQGHRRSLFERSGSGLLGHDGLMGRAVICRRCRRVSMLPQTESGDSISIC
RCGSPALPLNDMVMSLLAEGELGLLIGGRNEGSLSRREEMEGASKDLIGI
LPTCKFSAAAARAASARATATATATAEESAAPVSNSSVAKGDDVEKRKER
EGEKGAEKNDSFAAATATDTAWSTCLPMEGGEGASALPGKGKDSGGNGRC
CNSKRELREHSSCSTGGEGGKIATSTETETPIPKQLDSHNDDLSCRICFE
DYVDGDELRVLPCFHRFHTGCSFDWLTRKKTCPLCMTSIDVIMRRPEDLM
GGGGRGEG*
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Synonyms
Publications