NO09G02110.1, NO09G02110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02110.1
Unique NameNO09G02110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1778
Alignment locationchr9:647314..649222 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:647314..649222 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G02110.1 vs.
Match: EWM27596.1 (ring u-box domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 210.3 bits (534), Expect = 1.100e-50
Identity = 146/253 (57.71%), Postives = 176/253 (69.57%), Query Frame = 0 
Query:    1 MGNRSSAYPADHLASTRGGASSSSASTGAASRSNS--SSGTSNQGHFHRASSTSSSNTSTGYSLPQDQTTCPQCQRVLLIPHNAPLFRCPCGVLFRTETLQQEQGHRRSLFERSGSGLLGHDGLMGRAVICRRCRRVSMLPQTESGDSISICRCGSPALPLNDMVMSLLAEGELGLLIGGRN--EGSLSRREEMEGASKDLIGILPTCKFSA-AAARAASARATATATATAEESAAPVSNSSVAKGDDVEKRK 249
            MGNR++ YPA+H +STR   S+S +ST A S+ +   SSG    G+F    STS++ TS+    P  QT CPQCQRVLLIP NAPLFRCPCGVLFRTETL   +      FER  SGLLG  GLMGR+VICRRCRR+SMLPQ  S D I+IC CGSPALPLNDMVMSLLAEGELGLL  GR+    +L R+ ++EGAS+DLI +LPTC FSA AAARAA+AR    + A +   A+ V +    K    E++K
Sbjct:    1 MGNRNT-YPAEHHSSTRSTRSASPSSTAAESQGSGRRSSGERPNGNF-LYQSTSAAGTSS----PSHQTMCPQCQRVLLIPPNAPLFRCPCGVLFRTETLDPHRS-----FERPTSGLLGATGLMGRSVICRRCRRLSMLPQDGSSDGIAICPCGSPALPLNDMVMSLLAEGELGLLGRGRHGRRRALFRQGDVEGASEDLIDLLPTCTFSAEAAARAATARLGGKSPAPSGVQAS-VLDEGAGKNCCGERKK 241
The following BLAST results are available for this feature:
BLAST of NO09G02110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27596.11.100e-5057.71ring u-box domain-containing protein [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02110NO09G02110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02110.1NO09G02110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02110.1.cds1NO09G02110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G02110.1.cds2NO09G02110.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02110.1 ID=NO09G02110.1|Name=NO09G02110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1778bp
ACGGCACAAACCATACGCCAACACCACGCACCACAGCATGGGCAACCGGA
GCAGTGCATATCCTGCAGACCACCTGGCGTCCACAAGAGGCGGTGCGTCG
TCTTCATCTGCATCGACTGGGGCGGCCTCAAGGAGCAACAGCAGCAGCGG
CACTAGCAATCAAGGCCATTTCCATCGAGCCAGCAGCACCAGCAGTAGCA
ACACCAGCACCGGGTACAGCCTCCCGCAAGACCAAACCACCTGCCCACAA
TGTCAACGCGTCCTGCTCATCCCGCACAATGCCCCCCTTTTCCGATGTCC
GTGCGGTGTGCTATTTCGAACCGAGACGTTGCAACAAGAACAAGGGCATC
GTCGCAGTCTATTTGAGCGGTCGGGGAGCGGGCTCCTGGGACATGATGGC
CTGATGGGCCGTGCTGTGATCTGCCGTCGATGTCGCCGCGTTTCCATGCT
CCCACAAACTGAGTCAGGAGACAGTATATCTATCTGCAGGTGCGGCTCCC
CGGCGTTGCCTTTGAATGATATGGTCATGTCTTTATTGGCGGAGGGGGAA
TTGGGCTTACTCATAGGAGGGAGGAATGAAGGGTCTCTCTCACGGAGGGA
AGAGATGGAGGGGGCATCCAAAGACTTGATTGGAATCTTGCCCACATGCA
AATTCTCGGCGGCAGCGGCGAGAGCGGCGAGTGCCCGTGCGACTGCGACT
GCGACTGCGACCGCAGAGGAGTCTGCTGCGCCTGTGAGTAATAGTAGTGT
GGCTAAGGGAGATGATGTGGAGAAGAGAAAAGAGAGGGAGGGGGAGAAGG
GAGCAGAGAAAAATGACTCTTTTGCTGCTGCCACCGCTACGGATACTGCG
TGGTCTACATGCTTACCGATGGAGGGAGGAGAAGGAGCATCAGCATTGCC
AGGAAAGGGAAAAGACAGCGGTGGTAATGGTAGGTGTTGTAATAGCAAAA
GAGAACTACGAGAACACAGCTCGTGTTCTACAGGAGGGGAAGGAGGAAAG
ATAGCAACGTCCACAGAAACAGAGACACCGATACCCAAGCAGTTGGATTC
GCACAATGATGATTTGTCTTGTCGGATTTGTTTCGAGGACTACGTAGATG
GGGATGAATTAAGGGTGTTGCCGTGTTTTCATCGGTTCCACACCGGTTGC
TCTTTTGATTGGCTGACCAGGAAGAAGACATGCCCGTTGTGTATGACGAG
TATCGACGTGATCATGCGGAGGCCTGAAGATCTGATGGGTGGTGGAGGAA
GAGGTGAGGGATGAGCGAGGGAGGGAGGAAAGATAGGAGGGCGATGTGGG
AAGGCAGAAGACATATCTGTTGAATGGCGTGTATTGTTAGATAGTTTCTT
GATCTTATCATGCGGAGCTTTGAAAGCCAGATTGTGGGTTACGGTGGAGG
TAAGTTGAAATAAGAAGGGAAGAATTGTTGGAAGAGGAGGCAGGAAGCAC
CGTCGTTAGCTTGCCTCTCCTTCTGCTGTGCACAAGGACGATCAAGAAAA
AAATAAGACAAATTTCACAGGTGCGAGTGAATATTAAGAATAGGAGCCAC
AGAAATGACAGAAATATTGTTTGTAAATGCAAAGGAGGCAACAAGAGAAG
AGTCGGCGAGAGAAATAAGGTATGGCATGAAGCAACACAAGCAGCAGCAG
CAACAGATTAGCTGCATTAGCAGCAGCAGCAGCAACAGAGATGTCACCAA
GACAGTTAACTCGAAAGTTACGAAGGAAGCAAGAGATGCGAAGAAGAAAT
GTGAAGCCTAAAGCTGCAGAGAAACGGC
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protein sequence of NO09G02110.1

>NO09G02110.1-protein ID=NO09G02110.1-protein|Name=NO09G02110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=409bp
MGNRSSAYPADHLASTRGGASSSSASTGAASRSNSSSGTSNQGHFHRASS
TSSSNTSTGYSLPQDQTTCPQCQRVLLIPHNAPLFRCPCGVLFRTETLQQ
EQGHRRSLFERSGSGLLGHDGLMGRAVICRRCRRVSMLPQTESGDSISIC
RCGSPALPLNDMVMSLLAEGELGLLIGGRNEGSLSRREEMEGASKDLIGI
LPTCKFSAAAARAASARATATATATAEESAAPVSNSSVAKGDDVEKRKER
EGEKGAEKNDSFAAATATDTAWSTCLPMEGGEGASALPGKGKDSGGNGRC
CNSKRELREHSSCSTGGEGGKIATSTETETPIPKQLDSHNDDLSCRICFE
DYVDGDELRVLPCFHRFHTGCSFDWLTRKKTCPLCMTSIDVIMRRPEDLM
GGGGRGEG*
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mRNA from alignment at chr9:647314..649222+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02110.1 ID=NO09G02110.1|Name=NO09G02110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1909bp|location=Sequence derived from alignment at chr9:647314..649222+ (Nannochloropsis oceanica)
ACGGCACAAACCATACGCCAACACCACGCACCACAGCATGGGCAACCGGA
GCAGTGCATATCCTGCAGACCACCTGGCGGTAAGTATGTCTAGTGGAAGG
GCACAGATTGATGGGATGTGAAAACAGTGGCATTAAAGGGGCTCCCTCTT
TGTCATGCATTTCCATCATCCCCTCCTCACCACGTCTTCTCGCTACCTGC
TTACACCCAGTCCACAAGAGGCGGTGCGTCGTCTTCATCTGCATCGACTG
GGGCGGCCTCAAGGAGCAACAGCAGCAGCGGCACTAGCAATCAAGGCCAT
TTCCATCGAGCCAGCAGCACCAGCAGTAGCAACACCAGCACCGGGTACAG
CCTCCCGCAAGACCAAACCACCTGCCCACAATGTCAACGCGTCCTGCTCA
TCCCGCACAATGCCCCCCTTTTCCGATGTCCGTGCGGTGTGCTATTTCGA
ACCGAGACGTTGCAACAAGAACAAGGGCATCGTCGCAGTCTATTTGAGCG
GTCGGGGAGCGGGCTCCTGGGACATGATGGCCTGATGGGCCGTGCTGTGA
TCTGCCGTCGATGTCGCCGCGTTTCCATGCTCCCACAAACTGAGTCAGGA
GACAGTATATCTATCTGCAGGTGCGGCTCCCCGGCGTTGCCTTTGAATGA
TATGGTCATGTCTTTATTGGCGGAGGGGGAATTGGGCTTACTCATAGGAG
GGAGGAATGAAGGGTCTCTCTCACGGAGGGAAGAGATGGAGGGGGCATCC
AAAGACTTGATTGGAATCTTGCCCACATGCAAATTCTCGGCGGCAGCGGC
GAGAGCGGCGAGTGCCCGTGCGACTGCGACTGCGACTGCGACCGCAGAGG
AGTCTGCTGCGCCTGTGAGTAATAGTAGTGTGGCTAAGGGAGATGATGTG
GAGAAGAGAAAAGAGAGGGAGGGGGAGAAGGGAGCAGAGAAAAATGACTC
TTTTGCTGCTGCCACCGCTACGGATACTGCGTGGTCTACATGCTTACCGA
TGGAGGGAGGAGAAGGAGCATCAGCATTGCCAGGAAAGGGAAAAGACAGC
GGTGGTAATGGTAGGTGTTGTAATAGCAAAAGAGAACTACGAGAACACAG
CTCGTGTTCTACAGGAGGGGAAGGAGGAAAGATAGCAACGTCCACAGAAA
CAGAGACACCGATACCCAAGCAGTTGGATTCGCACAATGATGATTTGTCT
TGTCGGATTTGTTTCGAGGACTACGTAGATGGGGATGAATTAAGGGTGTT
GCCGTGTTTTCATCGGTTCCACACCGGTTGCTCTTTTGATTGGCTGACCA
GGAAGAAGACATGCCCGTTGTGTATGACGAGTATCGACGTGATCATGCGG
AGGCCTGAAGATCTGATGGGTGGTGGAGGAAGAGGTGAGGGATGAGCGAG
GGAGGGAGGAAAGATAGGAGGGCGATGTGGGAAGGCAGAAGACATATCTG
TTGAATGGCGTGTATTGTTAGATAGTTTCTTGATCTTATCATGCGGAGCT
TTGAAAGCCAGATTGTGGGTTACGGTGGAGGTAAGTTGAAATAAGAAGGG
AAGAATTGTTGGAAGAGGAGGCAGGAAGCACCGTCGTTAGCTTGCCTCTC
CTTCTGCTGTGCACAAGGACGATCAAGAAAAAAATAAGACAAATTTCACA
GGTGCGAGTGAATATTAAGAATAGGAGCCACAGAAATGACAGAAATATTG
TTTGTAAATGCAAAGGAGGCAACAAGAGAAGAGTCGGCGAGAGAAATAAG
GTATGGCATGAAGCAACACAAGCAGCAGCAGCAACAGATTAGCTGCATTA
GCAGCAGCAGCAGCAACAGAGATGTCACCAAGACAGTTAACTCGAAAGTT
ACGAAGGAAGCAAGAGATGCGAAGAAGAAATGTGAAGCCTAAAGCTGCAG
AGAAACGGC
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Coding sequence (CDS) from alignment at chr9:647314..649222+

>NO09G02110.1 ID=NO09G02110.1|Name=NO09G02110.1|organism=Nannochloropsis oceanica|type=CDS|length=1227bp|location=Sequence derived from alignment at chr9:647314..649222+ (Nannochloropsis oceanica)
ATGGGCAACCGGAGCAGTGCATATCCTGCAGACCACCTGGCGTCCACAAG
AGGCGGTGCGTCGTCTTCATCTGCATCGACTGGGGCGGCCTCAAGGAGCA
ACAGCAGCAGCGGCACTAGCAATCAAGGCCATTTCCATCGAGCCAGCAGC
ACCAGCAGTAGCAACACCAGCACCGGGTACAGCCTCCCGCAAGACCAAAC
CACCTGCCCACAATGTCAACGCGTCCTGCTCATCCCGCACAATGCCCCCC
TTTTCCGATGTCCGTGCGGTGTGCTATTTCGAACCGAGACGTTGCAACAA
GAACAAGGGCATCGTCGCAGTCTATTTGAGCGGTCGGGGAGCGGGCTCCT
GGGACATGATGGCCTGATGGGCCGTGCTGTGATCTGCCGTCGATGTCGCC
GCGTTTCCATGCTCCCACAAACTGAGTCAGGAGACAGTATATCTATCTGC
AGGTGCGGCTCCCCGGCGTTGCCTTTGAATGATATGGTCATGTCTTTATT
GGCGGAGGGGGAATTGGGCTTACTCATAGGAGGGAGGAATGAAGGGTCTC
TCTCACGGAGGGAAGAGATGGAGGGGGCATCCAAAGACTTGATTGGAATC
TTGCCCACATGCAAATTCTCGGCGGCAGCGGCGAGAGCGGCGAGTGCCCG
TGCGACTGCGACTGCGACTGCGACCGCAGAGGAGTCTGCTGCGCCTGTGA
GTAATAGTAGTGTGGCTAAGGGAGATGATGTGGAGAAGAGAAAAGAGAGG
GAGGGGGAGAAGGGAGCAGAGAAAAATGACTCTTTTGCTGCTGCCACCGC
TACGGATACTGCGTGGTCTACATGCTTACCGATGGAGGGAGGAGAAGGAG
CATCAGCATTGCCAGGAAAGGGAAAAGACAGCGGTGGTAATGGTAGGTGT
TGTAATAGCAAAAGAGAACTACGAGAACACAGCTCGTGTTCTACAGGAGG
GGAAGGAGGAAAGATAGCAACGTCCACAGAAACAGAGACACCGATACCCA
AGCAGTTGGATTCGCACAATGATGATTTGTCTTGTCGGATTTGTTTCGAG
GACTACGTAGATGGGGATGAATTAAGGGTGTTGCCGTGTTTTCATCGGTT
CCACACCGGTTGCTCTTTTGATTGGCTGACCAGGAAGAAGACATGCCCGT
TGTGTATGACGAGTATCGACGTGATCATGCGGAGGCCTGAAGATCTGATG
GGTGGTGGAGGAAGAGGTGAGGGATGA
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Synonyms
Publications