NO09G02010, NO09G02010 (gene) Nannochloropsis oceanica

Overview
NameNO09G02010
Unique NameNO09G02010
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1035
Alignment locationchr9:617563..618597 +

Link to JBrowse

Properties
Property NameValue
DescriptionAlpha-ketoglutarate-dependent dioxygenase alkB homolog 6
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:617563..618597 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0055114oxidation-reduction process
Vocabulary: INTERPRO
TermDefinition
IPR005123Oxoglu/Fe-dep_dioxygenase
IPR032862ALKBH6
IPR027450AlkB-like
Homology
[Close]
BLAST of NO09G02010 vs. NCBI_GenBank
Match: XP_012063312.1 (PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 [Atta cephalotes])

HSP 1 Score: 127.1 bits (318), Expect = 9.100e-26
Identity = 70/209 (33.49%), Postives = 104/209 (49.76%), Query Frame = 0 
Query:   67 YVPEWLSEEDARQLLEAIDQAPAGLWTNLQNRRLQNLGGTPASATGKGMRCLPVPSYGHAMFEALVAAGVFASDTAPNHILLNEYSNGQGIALHKDGPLYQNRVAIVSLGAPALIEFWDRPHLNDLNAPRCSGSNFPSHPSSATVRLEHRSLLVFEGDAYEKYWHGILRRHELPAEESGDRG--------------KEDRRMSLTVRRV 262
            Y+P +++EE+ RQ+++ ++  P   WT L +RRLQN GG P S   KGM    +P +     + + A  +F     PNHIL+NEY +GQGI  H DGPL+   V  +S G+  +++F+ R  + +    +   S          + LE RSLL+ + D Y  Y H I  R      ES  +               K D R+SLT+R V
Sbjct:   23 YIPNFITEEEERQIIKCVNSVPQPKWTQLSHRRLQNWGGVPHS---KGMIAEAIPDWLQKYIDKVTALSIFEKGVLPNHILINEYLSGQGIMAHSDGPLFYPIVTTISCGSHTVLDFYKRLEMTEQQQCKLEFS----------LLLERRSLLILQKDLYYNYLHSIAERDADSISESSIKNLHMCAKKFTEEEIIKRDTRLSLTIRHV 218
[Close]
BLAST of NO09G02010 vs. NCBI_GenBank
Match: XP_022187663.1 (alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 [Nilaparvata lugens])

HSP 1 Score: 127.1 bits (318), Expect = 9.100e-26
Identity = 78/230 (33.91%), Postives = 109/230 (47.39%), Query Frame = 0 
Query:   50 LDLIKFKVSPGAIDGIYYVPEWLSEEDARQLLEAIDQAPAGLWTNLQNRRLQNLGGTPASATGKGMRCLPVPSYGHAMFEALVAAGVFASDTAPNHILLNEYSNGQGIALHKDGPLYQNRVAIVSLGAPALIEFWDR-----PHLNDLNAPRCSGSNFPSHPSSATVRLEHRSLLVFEGDAYEKYWHGILRRHELPAEES-------------GDRGKEDRRMSLTVRRV 262
            L+L K    P   D IYY+P ++SEE+   ++  +   P   WT L NRRLQN GG P     KGM    +P +     E +     F     PNH+L+NEY  GQGI  H DGPL+   V  +S G+  ++EF+ +         D++ P  +     S+    ++ +E RSLLV + D Y KY HGI    +    E              GD    D R+SLT+R V
Sbjct:    3 LNLFKLNNVP---DSIYYIPNFISEEEESHIVNKVSNCPLPKWTQLSNRRLQNWGGIPHP---KGMIAETIPDWLQKYVEKVEDLNFFEDSIRPNHVLINEYLQGQGIMPHLDGPLFYPTVTTISCGSHTVLEFFSQRSDSVSEAEDISMP--TSQEKSSNLKMFSILVERRSLLVLKDDMYTKYLHGIAETCDDIISEDLANLQQTEQKFKIGDELTRDTRVSLTIRHV 224
[Close]
BLAST of NO09G02010 vs. NCBI_GenBank
Match: XP_007257531.2 (alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 [Astyanax mexicanus])

HSP 1 Score: 127.1 bits (318), Expect = 9.100e-26
Identity = 80/238 (33.61%), Postives = 122/238 (51.26%), Query Frame = 0 
Query:   44 LAH--RFSLDLIKFKVSPGAIDGIYYVPEWLSEEDARQLLEAIDQAPAGLWTNLQNRRLQNLGGTPASATGKGMRCLPVPSYGHAMFEALVAAGVFASDTAPNHILLNEYSNGQGIALHKDGPLYQNRVAIVSLGAPALIEFWDRPHLNDLNAPRCSGSNFPSHPSSATVRLEHRSLLVFEGDAYEKYWHGI-----------LRRHELPAEESGDRGKEDRRMSLTVRRVLNVCEAD 269
            +AH  R S +L +F V   A   +YYVP++++E +   LL+ + +AP   WT L  RRLQN GG P     KGM    +P +     + + A G FA   A NH+L+NEY   +GI  H+DGPLY   V  +SLG+  L++F+   +      P+   S +       ++ +  RSLL+ +G+ YE+Y HGI           +    +   + G+      R+SLT+R V  VC A+
Sbjct:    1 MAHPSRISEELKEFIVK-DAPPTVYYVPDFITEAEEEYLLQQVCRAPKPKWTQLSGRRLQNWGGLPHP---KGMLAEKLPDWLLTYSQKISALGAFAGKAA-NHVLVNEYKPEEGIMPHEDGPLYHPTVTTISLGSHTLLDFYTSVNQTQDGVPQTEESRY-----MLSLLVRRRSLLILQGEMYERYLHGIQGVAADTLTERVVNLSVAGGQVGETLPRGTRVSLTIRHVPKVCRAN 228
[Close]
BLAST of NO09G02010 vs. NCBI_GenBank
Match: KYM86612.1 (putative alpha-ketoglutarate-dependent dioxygenase ABH6 [Atta colombica])

HSP 1 Score: 126.7 bits (317), Expect = 1.200e-25
Identity = 70/209 (33.49%), Postives = 104/209 (49.76%), Query Frame = 0 
Query:   67 YVPEWLSEEDARQLLEAIDQAPAGLWTNLQNRRLQNLGGTPASATGKGMRCLPVPSYGHAMFEALVAAGVFASDTAPNHILLNEYSNGQGIALHKDGPLYQNRVAIVSLGAPALIEFWDRPHLNDLNAPRCSGSNFPSHPSSATVRLEHRSLLVFEGDAYEKYWHGILRRHELPAEESGDRG--------------KEDRRMSLTVRRV 262
            Y+P +++EE+ RQ+++ ++  P   WT L +RRLQN GG P S   KGM    +P +     + + A  +F     PNHIL+NEY +GQGI  H DGPL+   V  +S G+  +++F+ R  + +    +   S          + LE RSLL+ + D Y  Y H I  R      ES  +               K D R+SLT+R V
Sbjct:  429 YIPNFITEEEERQIIKCVNSVPQPKWTQLSHRRLQNWGGVPHS---KGMIAEAIPDWLQKYIDKVTALSIFEKGVLPNHILINEYLSGQGIMAHSDGPLFYPIVTTISCGSHTVLDFYKRLEMTEQQQCKLEFS----------LLLERRSLLILQKDLYYNYLHSIAERDVDSISESSIKNLHMCAKKFTEEEIIKRDTRLSLTIRHV 624
[Close]
BLAST of NO09G02010 vs. NCBI_GenBank
Match: XP_018044928.1 (PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 [Atta colombica])

HSP 1 Score: 126.7 bits (317), Expect = 1.200e-25
Identity = 70/209 (33.49%), Postives = 104/209 (49.76%), Query Frame = 0 
Query:   67 YVPEWLSEEDARQLLEAIDQAPAGLWTNLQNRRLQNLGGTPASATGKGMRCLPVPSYGHAMFEALVAAGVFASDTAPNHILLNEYSNGQGIALHKDGPLYQNRVAIVSLGAPALIEFWDRPHLNDLNAPRCSGSNFPSHPSSATVRLEHRSLLVFEGDAYEKYWHGILRRHELPAEESGDRG--------------KEDRRMSLTVRRV 262
            Y+P +++EE+ RQ+++ ++  P   WT L +RRLQN GG P S   KGM    +P +     + + A  +F     PNHIL+NEY +GQGI  H DGPL+   V  +S G+  +++F+ R  + +    +   S          + LE RSLL+ + D Y  Y H I  R      ES  +               K D R+SLT+R V
Sbjct:   23 YIPNFITEEEERQIIKCVNSVPQPKWTQLSHRRLQNWGGVPHS---KGMIAEAIPDWLQKYIDKVTALSIFEKGVLPNHILINEYLSGQGIMAHSDGPLFYPIVTTISCGSHTVLDFYKRLEMTEQQQCKLEFS----------LLLERRSLLILQKDLYYNYLHSIAERDVDSISESSIKNLHMCAKKFTEEEIIKRDTRLSLTIRHV 218
[Close]
BLAST of NO09G02010 vs. NCBI_GenBank
Match: XP_018349148.1 (PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 [Trachymyrmex septentrionalis])

HSP 1 Score: 126.7 bits (317), Expect = 1.200e-25
Identity = 70/208 (33.65%), Postives = 104/208 (50.00%), Query Frame = 0 
Query:   67 YVPEWLSEEDARQLLEAIDQAPAGLWTNLQNRRLQNLGGTPASATGKGMRCLPVPSYGHAMFEALVAAGVFASDTAPNHILLNEYSNGQGIALHKDGPLYQNRVAIVSLGAPALIEFWDRPHLNDLNAPRCSGSNFPSHPSSATVRLEHRSLLVFEGDAYEKYWHGILRRHELPAEESGDRG-------------KEDRRMSLTVRRV 262
            Y+P +++EE+ RQ+++ ++  P   WT L +RRLQN GG P     KGM    +P +     + ++A  VF  +  PNH+L+NEY  GQGI  H DGPL+   V  +S G+  +++F+ R  L      +C            ++ LE RSLL+ + D Y  Y H I  R      ES  +              K D R+SLT+R V
Sbjct:   23 YIPNFITEEEERQIIKCVNSVPQPKWTQLSHRRLQNWGGIPHP---KGMIAEAIPDWLQKYIDKVIALNVFEKEVLPNHVLINEYLTGQGIMAHSDGPLFYPVVTTISCGSHTILDFYKR--LETTEQQQCK--------LEFSLLLERRSLLILQKDLYYNYLHSIAERDADSISESSIKNLHMCAKKFTEEEIKRDTRVSLTIRHV 217
[Close]
BLAST of NO09G02010 vs. NCBI_GenBank
Match: XP_022331686.1 (alpha-ketoglutarate-dependent dioxygenase alkB homolog 6-like [Crassostrea virginica])

HSP 1 Score: 126.7 bits (317), Expect = 1.200e-25
Identity = 82/233 (35.19%), Postives = 116/233 (49.79%), Query Frame = 0 
Query:   47 RFSLDLIKFKVSPGAIDGIYYVPEWLSEEDARQLLEAIDQAPAGLWTNLQNRRLQNLGGTPASATGKGMRCLPVPSYGHAMFEALVAAGVFASDTAPNHILLNEYSNGQGIALHKDGPLYQNRVAIVSLGAPALIEFWDRPHLNDLNAPRCSGSNFPSHPSSATVRLEHRSLLVFEGDAYEKYWHGILRR---------HELPAEESGDRGKE---DRRMSLTVRRVLNVCEA 268
            R  L+ +K   +P     IYY+P ++S+E+ + LL  +  AP   WT L NRRLQN GG P     KGM    +P +     E + A G F  D  PNH+L+NEY  GQGI  H+DGPLY   V+ +SLG+  L+EF+   +  DL   +             ++ LE RSL+    + Y+ Y HGI  R           +   E+    +E     R+SLT+R V  V +A
Sbjct:    3 RSELEKMKVTQTP---PSIYYIPNFISKEEEQYLLHHVTSAPKPKWTQLSNRRLQNWGGLPHP---KGMVAEEIPQWLKLYMEKVAALGFF-GDKTPNHVLVNEYLAGQGIMPHEDGPLYHPVVSTISLGSHTLLEFYQPLNSEDLPCDKQKEQTSFEDRFLTSILLEPRSLVFVCDEMYKTYLHGISERTVDKITDSIANIEMCETAREAEELMRTTRVSLTIRHVPKVLKA 228
[Close]
BLAST of NO09G02010 vs. NCBI_GenBank
Match: XP_011703443.1 (PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 [Wasmannia auropunctata])

HSP 1 Score: 126.3 bits (316), Expect = 1.600e-25
Identity = 72/209 (34.45%), Postives = 102/209 (48.80%), Query Frame = 0 
Query:   67 YVPEWLSEEDARQLLEAIDQAPAGLWTNLQNRRLQNLGGTPASATGKGMRCLPVPSYGHAMFEALVAAGVFASDTAPNHILLNEYSNGQGIALHKDGPLYQNRVAIVSLGAPALIEFWDRPHLNDLNAPRCSGSNFPSHPSSATVRLEHRSLLVFEGDAYEKYWHGILRRHELPAEES--------------GDRGKEDRRMSLTVRRV 262
            Y+P +++EE+ RQ+++ ++  P   WT L +RRLQN GG P     KGM    +P +     + + A   F     PNH+L+NEY +GQGI  H DGPL+   V  VS G+  L++F+ R    +   P+   S          + LE RSLLV + D Y  Y H I  R       S              G+  K D R+SLT+R V
Sbjct:   23 YIPNFITEEEERQIIKRVNSVPQPKWTQLSHRRLQNWGGIPHP---KGMIAEEIPDWLQRYIDKVTALNAFEKGVLPNHVLINEYLSGQGIMAHSDGPLFYPVVTTVSCGSHTLLDFYKRLETTEQQQPKLEFS----------LLLERRSLLVLQKDLYHNYLHSIAERETDGISGSSIKNLHMCEEKFTEGEVIKRDTRLSLTIRHV 218
[Close]
BLAST of NO09G02010 vs. NCBI_GenBank
Match: KYN03043.1 (putative alpha-ketoglutarate-dependent dioxygenase ABH6 [Cyphomyrmex costatus])

HSP 1 Score: 126.3 bits (316), Expect = 1.600e-25
Identity = 70/213 (32.86%), Postives = 103/213 (48.36%), Query Frame = 0 
Query:   63 DGIYYVPEWLSEEDARQLLEAIDQAPAGLWTNLQNRRLQNLGGTPASATGKGMRCLPVPSYGHAMFEALVAAGVFASDTAPNHILLNEYSNGQGIALHKDGPLYQNRVAIVSLGAPALIEFWDRPHLNDLNAPRCSGSNFPSHPSSATVRLEHRSLLVFEGDAYEKYWHGILRRHELPAEESGDRG--------------KEDRRMSLTVRRV 262
            D   Y+P +++EE+ RQ+++ ++  P   WT L +RRLQN GG P     KGM    +P +     + + A   F     PNH+L+NEY +GQGI  H DGPL+   V  +S G+  +++F+ R  + +   P+   S          + LE RSLLV   D Y  Y H I  +      ES  +               K D R+SLT+R V
Sbjct:   39 DSACYIPNFITEEEERQIIKCVNSVPQPKWTQLSHRRLQNWGGIPHP---KGMIAETIPDWLEKYIDKVTALSAFEKGVLPNHVLINEYLSGQGIMAHSDGPLFYPVVTTISCGSHTVLDFYKRLEMTEQQQPKLEFS----------LLLERRSLLVLRKDLYHNYLHSIAEKDADSILESSIKNLHMCAKKFTEEEIIKRDTRLSLTIRHV 238
[Close]
BLAST of NO09G02010 vs. NCBI_GenBank
Match: XP_018395141.1 (PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 [Cyphomyrmex costatus])

HSP 1 Score: 126.3 bits (316), Expect = 1.600e-25
Identity = 70/213 (32.86%), Postives = 103/213 (48.36%), Query Frame = 0 
Query:   63 DGIYYVPEWLSEEDARQLLEAIDQAPAGLWTNLQNRRLQNLGGTPASATGKGMRCLPVPSYGHAMFEALVAAGVFASDTAPNHILLNEYSNGQGIALHKDGPLYQNRVAIVSLGAPALIEFWDRPHLNDLNAPRCSGSNFPSHPSSATVRLEHRSLLVFEGDAYEKYWHGILRRHELPAEESGDRG--------------KEDRRMSLTVRRV 262
            D   Y+P +++EE+ RQ+++ ++  P   WT L +RRLQN GG P     KGM    +P +     + + A   F     PNH+L+NEY +GQGI  H DGPL+   V  +S G+  +++F+ R  + +   P+   S          + LE RSLLV   D Y  Y H I  +      ES  +               K D R+SLT+R V
Sbjct:   19 DSACYIPNFITEEEERQIIKCVNSVPQPKWTQLSHRRLQNWGGIPHP---KGMIAETIPDWLEKYIDKVTALSAFEKGVLPNHVLINEYLSGQGIMAHSDGPLFYPVVTTISCGSHTVLDFYKRLEMTEQQQPKLEFS----------LLLERRSLLVLRKDLYHNYLHSIAEKDADSILESSIKNLHMCAKKFTEEEIIKRDTRLSLTIRHV 218
The following BLAST results are available for this feature:
BLAST of NO09G02010 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_012063312.19.100e-2633.49PREDICTED: alpha-ketoglutarate-dependent dioxygena... [more]
XP_022187663.19.100e-2633.91alpha-ketoglutarate-dependent dioxygenase alkB hom... [more]
XP_007257531.29.100e-2633.61alpha-ketoglutarate-dependent dioxygenase alkB hom... [more]
KYM86612.11.200e-2533.49putative alpha-ketoglutarate-dependent dioxygenase... [more]
XP_018044928.11.200e-2533.49PREDICTED: alpha-ketoglutarate-dependent dioxygena... [more]
XP_018349148.11.200e-2533.65PREDICTED: alpha-ketoglutarate-dependent dioxygena... [more]
XP_022331686.11.200e-2535.19alpha-ketoglutarate-dependent dioxygenase alkB hom... [more]
XP_011703443.11.600e-2534.45PREDICTED: alpha-ketoglutarate-dependent dioxygena... [more]
KYN03043.11.600e-2532.86putative alpha-ketoglutarate-dependent dioxygenase... [more]
XP_018395141.11.600e-2532.86PREDICTED: alpha-ketoglutarate-dependent dioxygena... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL121nonsL121Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G02010.1NO09G02010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G02010.1NO09G02010.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G02010 ID=NO09G02010|Name=NO09G02010|organism=Nannochloropsis oceanica|type=gene|length=1035bp
ATGACAAGTCTGGACTTCAAAGCTCTGCGCAAGAAAGAGCGCGCAAAACT
CCAACGGCAGAAGCAGCAAGAAAACCAGTACCAGAACAAGGGTACGCTAA
GTCGGATTCATCTCGATGCTCCTTTGATCCTGGCACATCGCTTCAGTCTG
GACCTGATCAAATTCAAGGTCTCACCAGGCGCAATAGATGGTATTTACTA
TGTGCCTGAATGGTTGTCCGAGGAAGACGCGCGACAGCTACTGGAAGCCA
TTGATCAGgttagtggtgtgacgacattattattgtaaaatgagttaggg
tgacatgttgtatgtctgtgtgtacatatcttattgcatagtacaatcaa
ttttaggccgttttcatccttcctcctttcttctaattaatctcaaatac
agGCTCCAGCCGGACTTTGGACTAACCTGCAGAATCGACGCCTGCAAAAT
TTGGGCGGCACTCCTGCGTCTGCCACTGGAAAGGGCATGCGCTGTCTTCC
TGTGCCAAGCTATGGTCACGCCATGTTTGAGGCATTGGTGGCCGCGGGCG
TGTTTGCTTCGGACACCGCGCCAAACCACATTTTATTGAACGAATATAGT
AACGGACAAGGAATCGCGTTGCACAAAGATGGACCGCTTTACCAGAACCG
AGTTGCAATTGTGTCGTTGGGCGCACCTGCCCTTATTGAGTTTTGGGATC
GGCCTCATTTAAATGATTTGAACGCGCCCAGGTGTAGTGGTAGCAATTTT
CCGTCGCACCCGTCCTCTGCTACAGTGCGCTTAGAACATCGGTCTCTGCT
CGTATTTGAGGGAGATGCGTATGAGAAGTACTGGCATGGCATTTTGCGGC
GGCATGAGCTTCCTGCTGAGGAGTCAGGAGATAGAGGAAAGGAGGATCGC
CGGATGAGTTTGACTGTTCGCCGTGTTTTGAATGTCTGCGAAGCGGACAA
GGAGATGTTAGAGACTGCAGAAACCGTACGGGAAGAGAAGCGAGAAAATG
CGCGTTTTCTCATGTCAATATCGGATGACCGATAA
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protein sequence of NO09G02010.1

>NO09G02010.1-protein ID=NO09G02010.1-protein|Name=NO09G02010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=297bp
MTSLDFKALRKKERAKLQRQKQQENQYQNKGTLSRIHLDAPLILAHRFSL
DLIKFKVSPGAIDGIYYVPEWLSEEDARQLLEAIDQAPAGLWTNLQNRRL
QNLGGTPASATGKGMRCLPVPSYGHAMFEALVAAGVFASDTAPNHILLNE
YSNGQGIALHKDGPLYQNRVAIVSLGAPALIEFWDRPHLNDLNAPRCSGS
NFPSHPSSATVRLEHRSLLVFEGDAYEKYWHGILRRHELPAEESGDRGKE
DRRMSLTVRRVLNVCEADKEMLETAETVREEKRENARFLMSISDDR*
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Synonyms
Publications