NO09G02010.1, NO09G02010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02010.1
Unique NameNO09G02010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length891
Alignment locationchr9:617563..618597 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:617563..618597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G02010.1 vs.
Match: XP_005822923.1 (hypothetical protein GUITHDRAFT_79181 [Guillardia theta CCMP2712]; EKX35943.1 hypothetical protein GUITHDRAFT_79181 [Guillardia theta CCMP2712])

HSP 1 Score: 178.7 bits (452), Expect = 2.600e-41
Identity = 106/259 (40.93%), Postives = 148/259 (57.14%), Query Frame = 0
Query:   50 LDLIKFKVSPGAIDGIYYVPEWLSEEDARQLLEAIDQAPAGLWTNLQNRRLQNLGGTPASATGKGMRCLPVPSYGHAMFEALVAAGVFASDTAPNHILLNEYSNGQGIALHKDGPLYQNRVAIVSLGAPALIEFWDRPHLNDLNAPRCSGSNFPSHPSSATVRLEHRSLLVFEGDAYEKYWHGILRR-------HELPAEESGD------RGKEDRRMSLTVRRVLNVCEADKEMLETAETVREEKRENARFLMSISDD 296
            ++L KF+V  G +  ++Y+P +L+EE+   +L  +   P   W NL+ RRLQN GGTP      GM    VP + HA+ +ALV AGVF  +  PNH+LLNEY+ GQGIA H+DGPLY   VAI+SL  PAL++FW       L+A +C         + A+V     SLLVF  +AYE +WHGI+ R       H       GD        +  RR+SLTVRRVL + + ++ +L T E + EEKR+   +L S  ++
Sbjct:    1 MELDKFRV--GGLASLFYIPNFLTEEEGAAILRRVSMMPESSWANLKRRRLQNHGGTPHP---DGMIPSEVPQFIHAVMDALVQAGVFKEEERPNHVLLNEYARGQGIAPHQDGPLYMPLVAILSLDGPALLQFWP-----SLHATKCG-------EAVASVLCLSNSLLVFNEEAYESHWHGIVERGADNIEHHTCNLHVLGDDYCVGTAVERGRRISLTVRRVLKIRDGEERIL-TQEAMEEEKRKERWWLSSRGEE 241          
The following BLAST results are available for this feature:
BLAST of NO09G02010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005822923.12.600e-4140.93hypothetical protein GUITHDRAFT_79181 [Guillardia ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02010NO09G02010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02010.1NO09G02010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02010.1.cds1NO09G02010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G02010.1.cds2NO09G02010.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02010.1 ID=NO09G02010.1|Name=NO09G02010.1|organism=Nannochloropsis oceanica|type=mRNA|length=891bp
ATGACAAGTCTGGACTTCAAAGCTCTGCGCAAGAAAGAGCGCGCAAAACT
CCAACGGCAGAAGCAGCAAGAAAACCAGTACCAGAACAAGGGTACGCTAA
GTCGGATTCATCTCGATGCTCCTTTGATCCTGGCACATCGCTTCAGTCTG
GACCTGATCAAATTCAAGGTCTCACCAGGCGCAATAGATGGTATTTACTA
TGTGCCTGAATGGTTGTCCGAGGAAGACGCGCGACAGCTACTGGAAGCCA
TTGATCAGGCTCCAGCCGGACTTTGGACTAACCTGCAGAATCGACGCCTG
CAAAATTTGGGCGGCACTCCTGCGTCTGCCACTGGAAAGGGCATGCGCTG
TCTTCCTGTGCCAAGCTATGGTCACGCCATGTTTGAGGCATTGGTGGCCG
CGGGCGTGTTTGCTTCGGACACCGCGCCAAACCACATTTTATTGAACGAA
TATAGTAACGGACAAGGAATCGCGTTGCACAAAGATGGACCGCTTTACCA
GAACCGAGTTGCAATTGTGTCGTTGGGCGCACCTGCCCTTATTGAGTTTT
GGGATCGGCCTCATTTAAATGATTTGAACGCGCCCAGGTGTAGTGGTAGC
AATTTTCCGTCGCACCCGTCCTCTGCTACAGTGCGCTTAGAACATCGGTC
TCTGCTCGTATTTGAGGGAGATGCGTATGAGAAGTACTGGCATGGCATTT
TGCGGCGGCATGAGCTTCCTGCTGAGGAGTCAGGAGATAGAGGAAAGGAG
GATCGCCGGATGAGTTTGACTGTTCGCCGTGTTTTGAATGTCTGCGAAGC
GGACAAGGAGATGTTAGAGACTGCAGAAACCGTACGGGAAGAGAAGCGAG
AAAATGCGCGTTTTCTCATGTCAATATCGGATGACCGATAA
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protein sequence of NO09G02010.1

>NO09G02010.1-protein ID=NO09G02010.1-protein|Name=NO09G02010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=297bp
MTSLDFKALRKKERAKLQRQKQQENQYQNKGTLSRIHLDAPLILAHRFSL
DLIKFKVSPGAIDGIYYVPEWLSEEDARQLLEAIDQAPAGLWTNLQNRRL
QNLGGTPASATGKGMRCLPVPSYGHAMFEALVAAGVFASDTAPNHILLNE
YSNGQGIALHKDGPLYQNRVAIVSLGAPALIEFWDRPHLNDLNAPRCSGS
NFPSHPSSATVRLEHRSLLVFEGDAYEKYWHGILRRHELPAEESGDRGKE
DRRMSLTVRRVLNVCEADKEMLETAETVREEKRENARFLMSISDDR*
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mRNA from alignment at chr9:617563..618597+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02010.1 ID=NO09G02010.1|Name=NO09G02010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1035bp|location=Sequence derived from alignment at chr9:617563..618597+ (Nannochloropsis oceanica)
ATGACAAGTCTGGACTTCAAAGCTCTGCGCAAGAAAGAGCGCGCAAAACT CCAACGGCAGAAGCAGCAAGAAAACCAGTACCAGAACAAGGGTACGCTAA GTCGGATTCATCTCGATGCTCCTTTGATCCTGGCACATCGCTTCAGTCTG GACCTGATCAAATTCAAGGTCTCACCAGGCGCAATAGATGGTATTTACTA TGTGCCTGAATGGTTGTCCGAGGAAGACGCGCGACAGCTACTGGAAGCCA TTGATCAGGTTAGTGGTGTGACGACATTATTATTGTAAAATGAGTTAGGG TGACATGTTGTATGTCTGTGTGTACATATCTTATTGCATAGTACAATCAA TTTTAGGCCGTTTTCATCCTTCCTCCTTTCTTCTAATTAATCTCAAATAC AGGCTCCAGCCGGACTTTGGACTAACCTGCAGAATCGACGCCTGCAAAAT TTGGGCGGCACTCCTGCGTCTGCCACTGGAAAGGGCATGCGCTGTCTTCC TGTGCCAAGCTATGGTCACGCCATGTTTGAGGCATTGGTGGCCGCGGGCG TGTTTGCTTCGGACACCGCGCCAAACCACATTTTATTGAACGAATATAGT AACGGACAAGGAATCGCGTTGCACAAAGATGGACCGCTTTACCAGAACCG AGTTGCAATTGTGTCGTTGGGCGCACCTGCCCTTATTGAGTTTTGGGATC GGCCTCATTTAAATGATTTGAACGCGCCCAGGTGTAGTGGTAGCAATTTT CCGTCGCACCCGTCCTCTGCTACAGTGCGCTTAGAACATCGGTCTCTGCT CGTATTTGAGGGAGATGCGTATGAGAAGTACTGGCATGGCATTTTGCGGC GGCATGAGCTTCCTGCTGAGGAGTCAGGAGATAGAGGAAAGGAGGATCGC CGGATGAGTTTGACTGTTCGCCGTGTTTTGAATGTCTGCGAAGCGGACAA GGAGATGTTAGAGACTGCAGAAACCGTACGGGAAGAGAAGCGAGAAAATG CGCGTTTTCTCATGTCAATATCGGATGACCGATAA
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Coding sequence (CDS) from alignment at chr9:617563..618597+

>NO09G02010.1 ID=NO09G02010.1|Name=NO09G02010.1|organism=Nannochloropsis oceanica|type=CDS|length=891bp|location=Sequence derived from alignment at chr9:617563..618597+ (Nannochloropsis oceanica)
ATGACAAGTCTGGACTTCAAAGCTCTGCGCAAGAAAGAGCGCGCAAAACT
CCAACGGCAGAAGCAGCAAGAAAACCAGTACCAGAACAAGGGTACGCTAA
GTCGGATTCATCTCGATGCTCCTTTGATCCTGGCACATCGCTTCAGTCTG
GACCTGATCAAATTCAAGGTCTCACCAGGCGCAATAGATGGTATTTACTA
TGTGCCTGAATGGTTGTCCGAGGAAGACGCGCGACAGCTACTGGAAGCCA
TTGATCAGGCTCCAGCCGGACTTTGGACTAACCTGCAGAATCGACGCCTG
CAAAATTTGGGCGGCACTCCTGCGTCTGCCACTGGAAAGGGCATGCGCTG
TCTTCCTGTGCCAAGCTATGGTCACGCCATGTTTGAGGCATTGGTGGCCG
CGGGCGTGTTTGCTTCGGACACCGCGCCAAACCACATTTTATTGAACGAA
TATAGTAACGGACAAGGAATCGCGTTGCACAAAGATGGACCGCTTTACCA
GAACCGAGTTGCAATTGTGTCGTTGGGCGCACCTGCCCTTATTGAGTTTT
GGGATCGGCCTCATTTAAATGATTTGAACGCGCCCAGGTGTAGTGGTAGC
AATTTTCCGTCGCACCCGTCCTCTGCTACAGTGCGCTTAGAACATCGGTC
TCTGCTCGTATTTGAGGGAGATGCGTATGAGAAGTACTGGCATGGCATTT
TGCGGCGGCATGAGCTTCCTGCTGAGGAGTCAGGAGATAGAGGAAAGGAG
GATCGCCGGATGAGTTTGACTGTTCGCCGTGTTTTGAATGTCTGCGAAGC
GGACAAGGAGATGTTAGAGACTGCAGAAACCGTACGGGAAGAGAAGCGAG
AAAATGCGCGTTTTCTCATGTCAATATCGGATGACCGATAA
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Synonyms
Publications