NO09G02000, NO09G02000 (gene) Nannochloropsis oceanica

Overview
NameNO09G02000
Unique NameNO09G02000
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length612
Alignment locationchr9:616465..617076 +

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Properties
Property NameValue
DescriptionProtein creg1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:616465..617076 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Homology
BLAST of NO09G02000 vs. NCBI_GenBank
Match: XP_020166012.1 (protein CREG1 [Aegilops tauschii subsp. tauschii])

HSP 1 Score: 142.5 bits (358), Expect = 1.400e-30
Identity = 78/180 (43.33%), Postives = 114/180 (63.33%), Query Frame = 0
Query:   22 VGRHPRPIPSQPALSGRWLMHETSWGVLSSISTLQGIEGAPFGNPQSVVDGPYHDGLLGDNSTGIPYFFVSEMDVSQVDALSNSLVSLTCSEAALANGCTLTDPESPVCIRLTVTGEMVEVVDEE--EKAFAMQALFQRHPKMEGWPTDHDWKVKKIVPRHVFVLDMFGGVKAVSVEEYL 200
            V R  +P PS+ A + RWL  + +WGVLS+IS+   + GAPFGN  S     Y DG+ G+ S GIPYF+++ +D +  DAL +   S T SE  L   C   DPE+P C +LT+TG++ +VVD +  E   A  ALF +HP+MEGWP +H +++ K+   ++F++D FGG K +S  +YL
Sbjct:   36 VARDRKPAPSEAAATARWLAAQNTWGVLSTISS--DLSGAPFGNVVS-----YSDGVPGE-SHGIPYFYLTTLDPTARDALEDERTSFTLSEFPLGT-CGKVDPENPTCAKLTLTGKL-KVVDHKSPEADLAKTALFSKHPEMEGWPKNHHFEIFKLEIENIFLIDWFGGPKPISPSQYL 205          
BLAST of NO09G02000 vs. NCBI_GenBank
Match: XP_006448789.1 (protein CREG1 [Citrus clementina] >ESR62029.1 hypothetical protein CICLE_v10016724mg [Citrus clementina])

HSP 1 Score: 141.7 bits (356), Expect = 2.400e-30
Identity = 75/175 (42.86%), Postives = 114/175 (65.14%), Query Frame = 0
Query:   27 RPIPSQPALSGRWLMHETSWGVLSSISTLQGIEGAPFGNPQSVVDGPYHDGLLGDNSTGIPYFFVSEMDVSQVDALSNSLVSLTCSEAALANGCTLTDPESPVCIRLTVTGEMVEVVDEEEKA--FAMQALFQRHPKMEGWPTDHDWKVKKIVPRHVFVLDMFGGVKAVSVEEYL 200
            +P P+  A   RWL+ + SWGVLS+IS+  G+ GAPFGN  S  DG      L +  +G+PYF+++ +D +  +AL +   SL  SE  L   C  TDPE PVC ++T+TG++V +VD   KA  FA  ALF +HP+M+GWP DH++++ K+    +F+++ FGG K ++V++YL
Sbjct:   39 KPHPNDAAAYARWLVSQNSWGVLSTISS--GLGGAPFGNVVSFSDG------LPNEGSGVPYFYLTTLDPTASNALKDKRSSLAISEYPLGT-CGKTDPEDPVCAKITLTGKLV-LVDVNSKAAEFARNALFAKHPEMKGWPKDHNFQIFKLEIDDIFLINWFGGPKPLTVDQYL 203          
BLAST of NO09G02000 vs. NCBI_GenBank
Match: XP_015971620.1 (protein CREG1 isoform X1 [Arachis duranensis])

HSP 1 Score: 141.7 bits (356), Expect = 2.400e-30
Identity = 75/185 (40.54%), Postives = 113/185 (61.08%), Query Frame = 0
Query:   15 SSVASQAVGRHPRPIPSQPALSGRWLMHETSWGVLSSISTLQGIEGAPFGNPQSVVDGPYHDGLLGDNSTGIPYFFVSEMDVSQVDALSNSLVSLTCSEAALANGCTLTDPESPVCIRLTVTGEMVEVVDEEEKAFAMQALFQRHPKMEGWPTDHDWKVKKIVPRHVFVLDMFGGVKAVSVEEYL 200
            S    Q +    +P P   A S RWL+   SWGVL++IST   ++GAPFGN  S  DGP ++G      +GIPYF+++ +D +  +AL +   S T SE  L   C   DPE+P C ++T+TG++  V D +E  FA  +LF +H +M+GWP  H+++V K+    +F++D +GG K +SV+EYL
Sbjct:   24 SIAQGQFLSIQTKPDPDDSAASARWLLSLNSWGVLNTIST--DLDGAPFGNVVSFSDGPPNEG------SGIPYFYLTTLDPTARNALKDERASFTVSEYPLGT-CGNLDPENPACSKITLTGKLKLVDDSKEAEFARISLFSKHSEMKGWPEGHNFQVFKLEIEDIFLIDWYGGPKPLSVDEYL 199          
BLAST of NO09G02000 vs. NCBI_GenBank
Match: XP_015971621.1 (protein CREG1 isoform X2 [Arachis duranensis] >XP_020980910.1 protein CREG1 isoform X2 [Arachis duranensis])

HSP 1 Score: 141.7 bits (356), Expect = 2.400e-30
Identity = 75/185 (40.54%), Postives = 113/185 (61.08%), Query Frame = 0
Query:   15 SSVASQAVGRHPRPIPSQPALSGRWLMHETSWGVLSSISTLQGIEGAPFGNPQSVVDGPYHDGLLGDNSTGIPYFFVSEMDVSQVDALSNSLVSLTCSEAALANGCTLTDPESPVCIRLTVTGEMVEVVDEEEKAFAMQALFQRHPKMEGWPTDHDWKVKKIVPRHVFVLDMFGGVKAVSVEEYL 200
            S    Q +    +P P   A S RWL+   SWGVL++IST   ++GAPFGN  S  DGP ++G      +GIPYF+++ +D +  +AL +   S T SE  L   C   DPE+P C ++T+TG++  V D +E  FA  +LF +H +M+GWP  H+++V K+    +F++D +GG K +SV+EYL
Sbjct:   24 SIAQGQFLSIQTKPDPDDSAASARWLLSLNSWGVLNTIST--DLDGAPFGNVVSFSDGPPNEG------SGIPYFYLTTLDPTARNALKDERASFTVSEYPLGT-CGNLDPENPACSKITLTGKLKLVDDSKEAEFARISLFSKHSEMKGWPEGHNFQVFKLEIEDIFLIDWYGGPKPLSVDEYL 199          
BLAST of NO09G02000 vs. NCBI_GenBank
Match: XP_016162589.1 (protein CREG1 isoform X1 [Arachis ipaensis])

HSP 1 Score: 141.7 bits (356), Expect = 2.400e-30
Identity = 75/185 (40.54%), Postives = 113/185 (61.08%), Query Frame = 0
Query:   15 SSVASQAVGRHPRPIPSQPALSGRWLMHETSWGVLSSISTLQGIEGAPFGNPQSVVDGPYHDGLLGDNSTGIPYFFVSEMDVSQVDALSNSLVSLTCSEAALANGCTLTDPESPVCIRLTVTGEMVEVVDEEEKAFAMQALFQRHPKMEGWPTDHDWKVKKIVPRHVFVLDMFGGVKAVSVEEYL 200
            S    Q +    +P P   A S RWL+   SWGVL++IST   ++GAPFGN  S  DGP ++G      +GIPYF+++ +D +  +AL +   S T SE  L   C   DPE+P C ++T+TG++  V D +E  FA  +LF +H +M+GWP  H+++V K+    +F++D +GG K +SV+EYL
Sbjct:   24 SIAQGQFLSIQTKPDPDDSAASARWLLSLNSWGVLNTIST--DLDGAPFGNVVSFSDGPPNEG------SGIPYFYLTTLDPTARNALKDERASFTVSEYPLGT-CGNLDPENPACSKITLTGKLKLVDDSKEAEFARISLFSKHSEMKGWPEGHNFQVFKLEIEDIFLIDWYGGPKPLSVDEYL 199          
BLAST of NO09G02000 vs. NCBI_GenBank
Match: XP_016162590.1 (protein CREG1 isoform X2 [Arachis ipaensis])

HSP 1 Score: 141.7 bits (356), Expect = 2.400e-30
Identity = 75/185 (40.54%), Postives = 113/185 (61.08%), Query Frame = 0
Query:   15 SSVASQAVGRHPRPIPSQPALSGRWLMHETSWGVLSSISTLQGIEGAPFGNPQSVVDGPYHDGLLGDNSTGIPYFFVSEMDVSQVDALSNSLVSLTCSEAALANGCTLTDPESPVCIRLTVTGEMVEVVDEEEKAFAMQALFQRHPKMEGWPTDHDWKVKKIVPRHVFVLDMFGGVKAVSVEEYL 200
            S    Q +    +P P   A S RWL+   SWGVL++IST   ++GAPFGN  S  DGP ++G      +GIPYF+++ +D +  +AL +   S T SE  L   C   DPE+P C ++T+TG++  V D +E  FA  +LF +H +M+GWP  H+++V K+    +F++D +GG K +SV+EYL
Sbjct:   24 SIAQGQFLSIQTKPDPDDSAASARWLLSLNSWGVLNTIST--DLDGAPFGNVVSFSDGPPNEG------SGIPYFYLTTLDPTARNALKDERASFTVSEYPLGT-CGNLDPENPACSKITLTGKLKLVDDSKEAEFARISLFSKHSEMKGWPEGHNFQVFKLEIEDIFLIDWYGGPKPLSVDEYL 199          
BLAST of NO09G02000 vs. NCBI_GenBank
Match: XP_016315691.1 (PREDICTED: protein CREG2 [Sinocyclocheilus anshuiensis])

HSP 1 Score: 141.7 bits (356), Expect = 2.400e-30
Identity = 83/180 (46.11%), Postives = 108/180 (60.00%), Query Frame = 0
Query:   26 PRPIPSQP-----ALSGRWLMHETSWGVLSSISTLQGIEGAPFGNPQSVVDGPYHDGLLGDNSTGIPYFFVSEMDVSQVDALSNSLVSLTCSEAALANGC--TLTDPESPVCIRLTVTGEMVEVVDEEEKAFAMQALFQRHPKMEGWPTDHDWKVKKIVPRHVFVLDMFGGVKAVSVEEY 199
            P  IP+ P     A   R++ H + WG L++IST + I+G PFGN  SV DGP       DNSTGIPYF+V+ MD +  D  S    SLT SEA   + C   + DPE P C RLT+TG+MVE V  EE  FA +A+F RHP M+ WP  H+W   K+V + V++ D  GGV  + +EEY
Sbjct:  102 PSSIPTPPPHEEAARVARYMAHYSDWGHLATISTQEQIKGLPFGNIFSVSDGP------ADNSTGIPYFYVTPMDNTVTDLRSFPFASLTFSEAE-GDFCRKQVYDPEDPRCARLTLTGKMVE-VGPEELDFAKEAMFSRHPVMKKWPPGHNWFFMKLVLQQVWLQDWVGGVSVIPLEEY 273          
BLAST of NO09G02000 vs. NCBI_GenBank
Match: XP_021905307.1 (protein CREG1 [Carica papaya])

HSP 1 Score: 141.7 bits (356), Expect = 2.400e-30
Identity = 79/196 (40.31%), Postives = 121/196 (61.73%), Query Frame = 0
Query:    6 VLVMLALILSSVASQAVGRHPRPIPSQPALSGRWLMHETSWGVLSSISTLQGIEGAPFGNPQSVVDGPYHDGLLGDNSTGIPYFFVSEMDVSQVDALSNSLVSLTCSEAALANGCTLTDPESPVCIRLTVTGEMVEVVD--EEEKAFAMQALFQRHPKMEGWPTDHDWKVKKIVPRHVFVLDMFGGVKAVSVEEYL 200
            +++ L   L SV  + +     P P   A + RWL+ + SWGVL++IS+  G  GAPFGN  S  DGP ++G      +GIPYF+++ +D +  +AL +   SLT SE  L   C   DPE+P C ++T+TG+++ VVD   EE   A  ALF +HP+MEGWP  H++++ K+   ++F++D FGG K ++V +YL
Sbjct:   15 LVLFLVSFLDSVQGRPISMLSGPDPKDAAYTARWLVAQNSWGVLNTISSELG--GAPFGNVVSFSDGPPNEG------SGIPYFYLTALDPTARNALVDKRSSLTISEYPLGT-CGKIDPENPTCAKITLTGKLL-VVDGKSEEAEVARHALFSKHPEMEGWPKGHNFQIFKLEIENIFLIDWFGGAKPLTVYDYL 200          
BLAST of NO09G02000 vs. NCBI_GenBank
Match: BAJ97143.1 (predicted protein [Hordeum vulgare subsp. vulgare])

HSP 1 Score: 141.4 bits (355), Expect = 3.200e-30
Identity = 82/198 (41.41%), Postives = 124/198 (62.63%), Query Frame = 0
Query:    7 LVMLALILSSVA---SQAVGRHPRPIPSQPALSGRWLMHETSWGVLSSISTLQGIEGAPFGNPQSVVDGPYHDGLLGDNSTGIPYFFVSEMDVSQVDALSNSLVSLTCSEAALANGCTLTDPESPVCIRLTVTGEMVEVVDEE--EKAFAMQALFQRHPKMEGWPTDHDWKVKKIVPRHVFVLDMFGGVKAVSVEEYL 200
            L++LAL+L + A      V  + +P PS+ A + RWL  + +WGVLS+IS+   + GAPFGN  S     Y DG+ G+ S GIPYF+++ +D +  DAL +   S T SE  L   C   DPE+P C +LT+TG++ ++VD +  E   A  ALF +HP+MEGWP +H +++ K+   ++F++D FGG K +S  +YL
Sbjct:   13 LLLLALLLPAPAVAGRPLVAGNRKPAPSEAAATARWLAAQNTWGVLSTISS--DLSGAPFGNVVS-----YSDGVPGE-SHGIPYFYLTTLDPTARDALEDERTSFTLSEFPLGT-CGKVDPENPTCAKLTLTGKL-KMVDHKSPETDLAKTALFSKHPEMEGWPKNHHFEIFKLEIENIFLIDWFGGPKPISPSQYL 200          
BLAST of NO09G02000 vs. NCBI_GenBank
Match: ERN10696.1 (hypothetical protein AMTR_s00028p00248440, partial [Amborella trichopoda])

HSP 1 Score: 141.0 bits (354), Expect = 4.200e-30
Identity = 83/202 (41.09%), Postives = 125/202 (61.88%), Query Frame = 0
Query:    3 PASVLVMLALILSS----VASQAVGRHPRPIPSQPALSGRWLMHETSWGVLSSISTLQGIEGAPFGNPQSVVDGPYHDGLLGDNSTGIPYFFVSEMDVSQVDALSNSLVSLTCSEAALANGCTLTDPESPVCIRLTVTGEMVEVVDEEEKA-FAMQALFQRHPKMEGWPTDHDWKVKKIVPRHVFVLDMFGGVKAVSVEEYL 200
            P +   +L L+L S    + + +V    +P P+  A + RWL  E SWGVLS+IS+ +G  GAPFGN  S  DG   DG       GIPYF+++ +D +  +AL ++  SLT SE  L + C   DPE+PVC +LT+TG++  V    ++A FA QALF +H +M+ WP +H+++V K+    +F++D FGG K +S++EYL
Sbjct:    5 PLNACYLLLLVLISFDYHIIALSVPLRQKPDPADAAATARWLASENSWGVLSTISSDKG--GAPFGNVDSFSDGWPGDG------RGIPYFYLTTLDPTARNALKDARASLTLSEFPLGS-CGKIDPENPVCSKLTLTGKLTLVDGNSKEANFAKQALFSKHAEMKEWPKNHNFQVFKLEIEDIFLIDWFGGPKPLSLDEYL 197          
The following BLAST results are available for this feature:
BLAST of NO09G02000 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_020166012.11.400e-3043.33protein CREG1 [Aegilops tauschii subsp. tauschii][more]
XP_006448789.12.400e-3042.86protein CREG1 [Citrus clementina] >ESR62029.1 hypo... [more]
XP_015971620.12.400e-3040.54protein CREG1 isoform X1 [Arachis duranensis][more]
XP_015971621.12.400e-3040.54protein CREG1 isoform X2 [Arachis duranensis] >XP_... [more]
XP_016162589.12.400e-3040.54protein CREG1 isoform X1 [Arachis ipaensis][more]
XP_016162590.12.400e-3040.54protein CREG1 isoform X2 [Arachis ipaensis][more]
XP_016315691.12.400e-3046.11PREDICTED: protein CREG2 [Sinocyclocheilus anshuie... [more]
XP_021905307.12.400e-3040.31protein CREG1 [Carica papaya][more]
BAJ97143.13.200e-3041.41predicted protein [Hordeum vulgare subsp. vulgare][more]
ERN10696.14.200e-3041.09hypothetical protein AMTR_s00028p00248440, partial... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL121nonsL121Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR128ngnoR128Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010660NSK010660Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G02000.1NO09G02000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100256g4gene2936Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G02000.1NO09G02000.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G02000 ID=NO09G02000|Name=NO09G02000|organism=Nannochloropsis oceanica|type=gene|length=612bp
ATGCAGCCTGCTTCCGTCCTAGTCATGCTGGCGCTTATCCTGTCAAGCGT
GGCCTCGCAAGCGGTGGGACGTCACCCGAGGCCTATCCCTTCCCAGCCGG
CGCTGTCTGGCAGGTGGCTAATGCACGAGACCTCGTGGGGCGTCTTGTCC
TCCATCTCAACCCTCCAAGGCATTGAGGGTGCCCCGTTTGGGAATCCGCA
ATCAGTGGTTGATGGACCTTATCATGACGGTCTGTTGGGCGACAACTCAA
CCGGCATTCCTTACTTCTTCGTTTCTGAGATGGATGTGAGCCAAGTGGAC
GCATTATCCAACTCCCTCGTCTCTCTCACCTGCTCCGAGGCTGCATTGGC
GAACGGCTGCACGCTGACTGACCCCGAGAGCCCGGTCTGTATTCGTTTGA
CGGTGACGGGCGAGATGGTAGAGGTGGTAGACGAGGAAGAGAAGGCTTTT
GCGATGCAAGCTTTATTTCAGCGCCACCCGAAGATGGAAGGATGGCCGAC
AGACCACGATTGGAAGGTGAAGAAGATTGTGCCTCGGCATGTTTTCGTGC
TGGATATGTTTGGTGGCGTTAAGGCCGTGAGTGTAGAGGAGTATTTGAGT
ATTGAACTTTAG
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protein sequence of NO09G02000.1

>NO09G02000.1-protein ID=NO09G02000.1-protein|Name=NO09G02000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MQPASVLVMLALILSSVASQAVGRHPRPIPSQPALSGRWLMHETSWGVLS
SISTLQGIEGAPFGNPQSVVDGPYHDGLLGDNSTGIPYFFVSEMDVSQVD
ALSNSLVSLTCSEAALANGCTLTDPESPVCIRLTVTGEMVEVVDEEEKAF
AMQALFQRHPKMEGWPTDHDWKVKKIVPRHVFVLDMFGGVKAVSVEEYLS
IEL*
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Synonyms
Publications