NO09G02000.1, NO09G02000.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02000.1
Unique NameNO09G02000.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length612
Alignment locationchr9:616465..617076 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:616465..617076 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G02000.1 vs.
Match: EWM27625.1 (protein creg1 [Nannochloropsis gaditana])

HSP 1 Score: 302.8 bits (774), Expect = 8.300e-79
Identity = 145/201 (72.14%), Postives = 170/201 (84.58%), Query Frame = 0
Query:    1 MQPASVLVMLALILSSVASQA--VGRHPRPIPSQPALSGRWLMHETSWGVLSSISTLQGIEGAPFGNPQSVVDGPYHDGLLGDNSTGIPYFFVSEMDVSQVDALSNSLVSLTCSEAALANGCTLTDPESPVCIRLTVTGEMVEVVDEEEKAFAMQALFQRHPKMEGWPTDHDWKVKKIVPRHVFVLDMFGGVKAVSVEEYL 200
            M+     + ++L+  SV S     GRHPRP+P QPA SGRWL+HE++WGVLS++STL GI GAPFGNPQS+VDGPY DGL GDNSTGIPYFFVSE+DVSQ DA +NSLVSLT SEA +++ C + DPESP+CIRLTVTG++VEVVDEEE AFAMQALFQRHP+M+ WPTDH WKVKKIVPRH+FVLDMFGGVK VSV+EYL
Sbjct:    1 MRTLLFFLQVSLLWPSVNSDGPLFGRHPRPVPPQPAKSGRWLLHESTWGVLSTVSTLPGIAGAPFGNPQSLVDGPYRDGLFGDNSTGIPYFFVSELDVSQQDASANSLVSLTVSEAGVSSECAMLDPESPLCIRLTVTGDLVEVVDEEETAFAMQALFQRHPQMQTWPTDHGWKVKKIVPRHIFVLDMFGGVKPVSVDEYL 201          
The following BLAST results are available for this feature:
BLAST of NO09G02000.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27625.18.300e-7972.14protein creg1 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02000NO09G02000Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02000.1NO09G02000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02000.1.cds1NO09G02000.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02000.1 ID=NO09G02000.1|Name=NO09G02000.1|organism=Nannochloropsis oceanica|type=mRNA|length=612bp
ATGCAGCCTGCTTCCGTCCTAGTCATGCTGGCGCTTATCCTGTCAAGCGT
GGCCTCGCAAGCGGTGGGACGTCACCCGAGGCCTATCCCTTCCCAGCCGG
CGCTGTCTGGCAGGTGGCTAATGCACGAGACCTCGTGGGGCGTCTTGTCC
TCCATCTCAACCCTCCAAGGCATTGAGGGTGCCCCGTTTGGGAATCCGCA
ATCAGTGGTTGATGGACCTTATCATGACGGTCTGTTGGGCGACAACTCAA
CCGGCATTCCTTACTTCTTCGTTTCTGAGATGGATGTGAGCCAAGTGGAC
GCATTATCCAACTCCCTCGTCTCTCTCACCTGCTCCGAGGCTGCATTGGC
GAACGGCTGCACGCTGACTGACCCCGAGAGCCCGGTCTGTATTCGTTTGA
CGGTGACGGGCGAGATGGTAGAGGTGGTAGACGAGGAAGAGAAGGCTTTT
GCGATGCAAGCTTTATTTCAGCGCCACCCGAAGATGGAAGGATGGCCGAC
AGACCACGATTGGAAGGTGAAGAAGATTGTGCCTCGGCATGTTTTCGTGC
TGGATATGTTTGGTGGCGTTAAGGCCGTGAGTGTAGAGGAGTATTTGAGT
ATTGAACTTTAG
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protein sequence of NO09G02000.1

>NO09G02000.1-protein ID=NO09G02000.1-protein|Name=NO09G02000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MQPASVLVMLALILSSVASQAVGRHPRPIPSQPALSGRWLMHETSWGVLS
SISTLQGIEGAPFGNPQSVVDGPYHDGLLGDNSTGIPYFFVSEMDVSQVD
ALSNSLVSLTCSEAALANGCTLTDPESPVCIRLTVTGEMVEVVDEEEKAF
AMQALFQRHPKMEGWPTDHDWKVKKIVPRHVFVLDMFGGVKAVSVEEYLS
IEL*
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mRNA from alignment at chr9:616465..617076+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02000.1 ID=NO09G02000.1|Name=NO09G02000.1|organism=Nannochloropsis oceanica|type=mRNA|length=612bp|location=Sequence derived from alignment at chr9:616465..617076+ (Nannochloropsis oceanica)
ATGCAGCCTGCTTCCGTCCTAGTCATGCTGGCGCTTATCCTGTCAAGCGT GGCCTCGCAAGCGGTGGGACGTCACCCGAGGCCTATCCCTTCCCAGCCGG CGCTGTCTGGCAGGTGGCTAATGCACGAGACCTCGTGGGGCGTCTTGTCC TCCATCTCAACCCTCCAAGGCATTGAGGGTGCCCCGTTTGGGAATCCGCA ATCAGTGGTTGATGGACCTTATCATGACGGTCTGTTGGGCGACAACTCAA CCGGCATTCCTTACTTCTTCGTTTCTGAGATGGATGTGAGCCAAGTGGAC GCATTATCCAACTCCCTCGTCTCTCTCACCTGCTCCGAGGCTGCATTGGC GAACGGCTGCACGCTGACTGACCCCGAGAGCCCGGTCTGTATTCGTTTGA CGGTGACGGGCGAGATGGTAGAGGTGGTAGACGAGGAAGAGAAGGCTTTT GCGATGCAAGCTTTATTTCAGCGCCACCCGAAGATGGAAGGATGGCCGAC AGACCACGATTGGAAGGTGAAGAAGATTGTGCCTCGGCATGTTTTCGTGC TGGATATGTTTGGTGGCGTTAAGGCCGTGAGTGTAGAGGAGTATTTGAGT ATTGAACTTTAG
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Coding sequence (CDS) from alignment at chr9:616465..617076+

>NO09G02000.1 ID=NO09G02000.1|Name=NO09G02000.1|organism=Nannochloropsis oceanica|type=CDS|length=612bp|location=Sequence derived from alignment at chr9:616465..617076+ (Nannochloropsis oceanica)
ATGCAGCCTGCTTCCGTCCTAGTCATGCTGGCGCTTATCCTGTCAAGCGT
GGCCTCGCAAGCGGTGGGACGTCACCCGAGGCCTATCCCTTCCCAGCCGG
CGCTGTCTGGCAGGTGGCTAATGCACGAGACCTCGTGGGGCGTCTTGTCC
TCCATCTCAACCCTCCAAGGCATTGAGGGTGCCCCGTTTGGGAATCCGCA
ATCAGTGGTTGATGGACCTTATCATGACGGTCTGTTGGGCGACAACTCAA
CCGGCATTCCTTACTTCTTCGTTTCTGAGATGGATGTGAGCCAAGTGGAC
GCATTATCCAACTCCCTCGTCTCTCTCACCTGCTCCGAGGCTGCATTGGC
GAACGGCTGCACGCTGACTGACCCCGAGAGCCCGGTCTGTATTCGTTTGA
CGGTGACGGGCGAGATGGTAGAGGTGGTAGACGAGGAAGAGAAGGCTTTT
GCGATGCAAGCTTTATTTCAGCGCCACCCGAAGATGGAAGGATGGCCGAC
AGACCACGATTGGAAGGTGAAGAAGATTGTGCCTCGGCATGTTTTCGTGC
TGGATATGTTTGGTGGCGTTAAGGCCGTGAGTGTAGAGGAGTATTTGAGT
ATTGAACTTTAG
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Synonyms
Publications